ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLP_YEAST (P03870) Recombinase Flp protein (Protein Able) 31 2.3
2CARB_XANCP (P58943) Carbamoyl-phosphate synthase large chain (EC... 29 6.6
3PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precurs... 29 6.6
4LGR5_HUMAN (O75473) Leucine-rich repeat-containing G-protein cou... 29 6.6

>FLP_YEAST (P03870) Recombinase Flp protein (Protein Able)|
          Length = 423

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -2

Query: 346 QQHHQCFTQCRLARGGQQPESADQQRGRAHSQPQGRLLLRAGDMGWRVADALLGLTE-TA 170
           Q+H    T    +   Q   S +  +G +HS+   + LL  G+  W + + +L   E T+
Sbjct: 110 QKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTS 169

Query: 169 TSTLRRAVIWFLFRMT 122
             T  + +  FLF  T
Sbjct: 170 RFTKTKTLYQFLFLAT 185



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>CARB_XANCP (P58943) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1080

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -2

Query: 250 PQGRLLLRAGDMGWRVADALLGLTETATSTLRRAV 146
           P+ RLL RAG    R+A+ L+G  E A  TLRRA+
Sbjct: 488 PRLRLLKRAGFSDARLAE-LIGTNEEAVRTLRRAL 521



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>PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precursor|
           (Polymorphic membrane protein B)
          Length = 1754

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
 Frame = +1

Query: 109 NASSMSSGKETILQPAATCSSPFPSNLEEH-------------QRRASPYHQRGGAGGLE 249
           + SS SSG +++  P+++ + P  +NL+ H                ++P H+ G  G + 
Sbjct: 215 SGSSSSSGNDSVSSPSSSRAEPAAANLQSHFICATATPAAQTDTETSTPSHKPGSGGAIY 274

Query: 250 AE 255
           A+
Sbjct: 275 AK 276



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>LGR5_HUMAN (O75473) Leucine-rich repeat-containing G-protein coupled receptor|
           5 precursor (Orphan G-protein coupled receptor HG38)
           (G-protein coupled receptor 49) (G-protein coupled
           receptor 67)
          Length = 907

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -2

Query: 316 RLARGGQQPESADQQRG---RAHSQPQGRLLLR--AGDMG 212
           +LA GG  P S    RG     H +P GR+LLR    D+G
Sbjct: 17  QLATGGSSPRSGVLLRGCPTHCHCEPDGRMLLRVDCSDLG 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,463,852
Number of Sequences: 219361
Number of extensions: 993725
Number of successful extensions: 3842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3840
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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