ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PXL1_YEAST (P36166) Paxillin-like protein 1 30 2.2
2IF2_UREPA (Q9PQH1) Translation initiation factor IF-2 30 2.9
3PROB_GEOKA (Q5KYA3) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut... 30 3.8
4IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASP... 30 3.8
5ATS9_HUMAN (Q9P2N4) ADAMTS-9 precursor (EC 3.4.24.-) (A disinteg... 30 3.8
6PHOSP_RINDR (Q03335) Phosphoprotein (Protein P) 30 3.8
7PHOSP_RINDK (P35945) Phosphoprotein (Protein P) 30 3.8
8LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M ... 29 6.4
9CPB3_CAEJA (Q6E3D2) Cytoplasmic polyadenylation element-binding ... 29 6.4
10ZN434_HUMAN (Q9NX65) Zinc finger protein 434 29 6.4
11CCG8_NEUCR (Q01306) Clock-controlled protein 8 28 8.4

>PXL1_YEAST (P36166) Paxillin-like protein 1|
          Length = 706

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 454 SSIKKPANMPFLNDSGKRKSPGFLSDKPIHKKQKHERPSEGRRFVGDGSSVGTPFVRNNV 275
           S I    N   L  S ++KSPG  S     +    +  +E R  +    +V TP+   N+
Sbjct: 311 SKIYPDDNFSGLESSKEQKSPGVSSSSTKVEDLSLDGLNEKRLSITSSENVETPYTATNL 370

Query: 274 KQKQSIAEL 248
           + +Q IA+L
Sbjct: 371 QVEQLIAQL 379



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>IF2_UREPA (Q9PQH1) Translation initiation factor IF-2|
          Length = 614

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 385 LSDKPIHKKQKHERPSEGRRFVGDGSSVGTPFVRNNVKQKQSIAELAALAGKD---KLTA 215
           L  KP+      E P+ G +F+          + N+VKQK+   E A L   D   K+  
Sbjct: 347 LPSKPVKVSGFEEVPTAGDKFLALADEKQARAIANDVKQKKMRLERAMLQSSDIRTKIAN 406

Query: 214 GEVRKL 197
           GE++ +
Sbjct: 407 GELKNI 412



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>PROB_GEOKA (Q5KYA3) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 374

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 319 GDGSSVGTPFVRNNVKQKQSIAELAALAGKDKLTAGEVRKLL 194
           GDG+ +G PF +    +KQ IA  A +AG   + +G    LL
Sbjct: 249 GDGTYIGVPFPKQMQMRKQWIAYHAPVAGMITVDSGAEEALL 290



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>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)|
           (Protein iASPP) (PPP1R13B-like protein)
           (NFkB-interacting protein 1)
          Length = 828

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = +2

Query: 74  YQQKPSP*SAW-----FARNGSPFLQVLP--KKKRDGLGSLG 178
           Y++KPS  +++     FAR  SP LQ+LP  +   DGLG  G
Sbjct: 259 YEKKPSQTASYERLDVFARPASPSLQLLPWRESSLDGLGGTG 300



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>ATS9_HUMAN (Q9P2N4) ADAMTS-9 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 9) (ADAM-TS
            9) (ADAM-TS9)
          Length = 1935

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 350  RETLRGQAVCRGWQQCWHTVCQEQCQAETVHRRACC 243
            RE   G+    GW+    T C + C   T  RRA C
Sbjct: 989  REKCSGECNTGGWRYSAWTECSKSCDGGTQRRRAIC 1024



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>PHOSP_RINDR (Q03335) Phosphoprotein (Protein P)|
          Length = 507

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -2

Query: 448 IKKPANMPFLNDSGKR--KSPGFLSD----KPIHKKQKHERPSEGRRFVGDGSSVGTPFV 287
           +KKPA+     D+GK   +S G L      KPI KK      S   RFV DGS      +
Sbjct: 410 LKKPASERQSKDTGKLGIESKGLLKKEFQLKPIEKKS-----SSAIRFVPDGSVASRSVI 464

Query: 286 RNNVK 272
           R+ +K
Sbjct: 465 RSIIK 469



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>PHOSP_RINDK (P35945) Phosphoprotein (Protein P)|
          Length = 507

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -2

Query: 448 IKKPANMPFLNDSGKR--KSPGFLSD----KPIHKKQKHERPSEGRRFVGDGSSVGTPFV 287
           +KKPA+     D+GK   +S G L      KPI KK      S   RFV DGS      +
Sbjct: 410 LKKPASERQSKDTGKLGIESKGLLKKEFQLKPIEKKS-----SSAIRFVPDGSVASRSVI 464

Query: 286 RNNVK 272
           R+ +K
Sbjct: 465 RSIIK 469



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>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3110

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 279  LFLTNGVPTLLPSPTNRLPS-EGLSCFCFLWIGLSDRKPGDFLLPLSFKN 425
            LF+    P   PSP   +P  EG      +W  + +  P DF  P+SFKN
Sbjct: 2660 LFVGGAPPEFQPSPLRNIPPFEGC-----IWNLVINSVPMDFARPVSFKN 2704



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>CPB3_CAEJA (Q6E3D2) Cytoplasmic polyadenylation element-binding protein 3|
          Length = 734

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 439 PANMPFLNDSGKRKSPGFLSDKPIHKKQKHER 344
           P+       S K+ S  F S KPIH+KQ   R
Sbjct: 138 PSRFSVFGRSAKKVSESFSSQKPIHRKQSARR 169



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>ZN434_HUMAN (Q9NX65) Zinc finger protein 434|
          Length = 485

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = -1

Query: 413 QWQEEIARFPIGQTDPQETETRETLRGQAVCRGWQQCWHTVCQEQCQAETVHRRACCSGW 234
           +++ EI +  +   D +E E  + L+ ++  RG    WH+  Q+  ++E   RR C    
Sbjct: 202 EFKNEIKKENLKWDDSEEVEINKALQRKS--RGVY--WHSELQKGLESEPTSRRQC---- 253

Query: 233 *G*TDRRGGPEAAQAGNFSQGSLAHLSF 150
                 R  P  ++    SQ  ++H SF
Sbjct: 254 ------RNSPGESEEKTPSQEKMSHQSF 275



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>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 210 RSGSCSSRKFQPREPSPSLFFFGS 139
           RS S SS +FQ REP+P   F GS
Sbjct: 132 RSRSPSSNRFQTREPAPLSLFDGS 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,937,760
Number of Sequences: 219361
Number of extensions: 1441423
Number of successful extensions: 3871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3864
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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