ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196280.1| Oryza sativa (japonica cultivar-group) putative... 88 3e-14
2gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
4dbj|AK067341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
6gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome... 42 1.6
7emb|AL928576.9| Mouse DNA sequence from clone RP23-343C17 on chr... 42 1.6
8gb|AC173346.1| Mus musculus BAC clone RP23-42N8 from chromosome ... 42 1.6
9gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.1
10gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome... 40 6.1
11gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, comple... 40 6.1
12gb|AC016644.9| Homo sapiens chromosome 5 clone RP11-52M14, compl... 40 6.1
13dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.1
14gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, comp... 40 6.1
15dbj|AB073220.1| Vibrio cholerae non-O1 vcaM gene for ABC-type mu... 40 6.1
16gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chrom... 40 6.1
17emb|AJ276073.1|BTH276073 Riftia pachyptila inactive transposase 40 6.1 
>ref|NM_196280.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
            (OSJNBb0061I18.14), mRNA
          Length = 2520

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  cagtttatccttaccagccagagcagcaagctcggcgatggactgtttctgcttgacatt 280
            |||||| ||||||||||||||| |||||||||||||||| ||| ||||||| ||| |  |
Sbjct: 2466 cagtttctccttaccagccagatcagcaagctcggcgatcgaccgtttctgtttgccgct 2407

                                        
Query: 281  gttcctgacaaacggtgtgccaacactg 308
             ||||||||||| ||||||||| |||||
Sbjct: 2406 attcctgacaaatggtgtgccagcactg 2379



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 372  ggtttgtccgataggaaacctggcgatttcctcttg 407
            |||||||| || ||||| ||||| ||||||||||||
Sbjct: 2309 ggtttgtctgaaaggaagcctggtgatttcctcttg 2274
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>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone
             OSJNBb0061I18, complete sequence
          Length = 143163

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                         
Query: 221   cagtttatccttaccagccagagcagcaagctcggcgatggactgtttctgcttgacatt 280
             |||||| ||||||||||||||| |||||||||||||||| ||| ||||||| ||| |  |
Sbjct: 79801 cagtttctccttaccagccagatcagcaagctcggcgatcgaccgtttctgtttgccgct 79742

                                         
Query: 281   gttcctgacaaacggtgtgccaacactg 308
              ||||||||||| ||||||||| |||||
Sbjct: 79741 attcctgacaaatggtgtgccagcactg 79714



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 372   ggtttgtccgataggaaacctggcgatttcctcttg 407
             |||||||| || ||||| ||||| ||||||||||||
Sbjct: 79644 ggtttgtctgaaaggaagcctggtgatttcctcttg 79609
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                            
Query: 221      cagtttatccttaccagccagagcagcaagctcggcgatggactgtttctgcttgacatt 280
                |||||| ||||||||||||||| |||||||||||||||| ||| ||||||| ||| |  |
Sbjct: 12424374 cagtttctccttaccagccagatcagcaagctcggcgatcgaccgtttctgtttgccgct 12424433

                                            
Query: 281      gttcctgacaaacggtgtgccaacactg 308
                 ||||||||||| ||||||||| |||||
Sbjct: 12424434 attcctgacaaatggtgtgccagcactg 12424461



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 372      ggtttgtccgataggaaacctggcgatttcctcttg 407
                |||||||| || ||||| ||||| ||||||||||||
Sbjct: 12424531 ggtttgtctgaaaggaagcctggtgatttcctcttg 12424566
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>dbj|AK067341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105N21, full
            insert sequence
          Length = 3081

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  cagtttatccttaccagccagagcagcaagctcggcgatggactgtttctgcttgacatt 280
            |||||| ||||||||||||||| |||||||||||||||| ||| ||||||| ||| |  |
Sbjct: 2742 cagtttctccttaccagccagatcagcaagctcggcgatcgaccgtttctgtttgccgct 2683

                                        
Query: 281  gttcctgacaaacggtgtgccaacactg 308
             ||||||||||| ||||||||| |||||
Sbjct: 2682 attcctgacaaatggtgtgccagcactg 2655



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 372  ggtttgtccgataggaaacctggcgatttcctcttg 407
            |||||||| || ||||| ||||| ||||||||||||
Sbjct: 2585 ggtttgtctgaaaggaagcctggtgatttcctcttg 2550
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                            
Query: 221      cagtttatccttaccagccagagcagcaagctcggcgatggactgtttctgcttgacatt 280
                |||||| ||||||||||||||| |||||||||||||||| ||| ||||||| ||| |  |
Sbjct: 12431714 cagtttctccttaccagccagatcagcaagctcggcgatcgaccgtttctgtttgccgct 12431773

                                            
Query: 281      gttcctgacaaacggtgtgccaacactg 308
                 ||||||||||| ||||||||| |||||
Sbjct: 12431774 attcctgacaaatggtgtgccagcactg 12431801



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 372      ggtttgtccgataggaaacctggcgatttcctcttg 407
                |||||||| || ||||| ||||| ||||||||||||
Sbjct: 12431871 ggtttgtctgaaaggaagcctggtgatttcctcttg 12431906
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>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence
          Length = 182190

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   agggtctctcgtgtttctgtt 360
             |||||||||||||||||||||
Sbjct: 48920 agggtctctcgtgtttctgtt 48940
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>emb|AL928576.9| Mouse DNA sequence from clone RP23-343C17 on chromosome 2, complete
              sequence
          Length = 188169

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    cagccagagcagcaagctcgg 255
              |||||||||||||||||||||
Sbjct: 167087 cagccagagcagcaagctcgg 167067
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>gb|AC173346.1| Mus musculus BAC clone RP23-42N8 from chromosome 9, complete sequence
          Length = 219266

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 340    agggtctctcgtgtttctgtt 360
              |||||||||||||||||||||
Sbjct: 218642 agggtctctcgtgtttctgtt 218662
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>gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-392C14, complete
             sequence
          Length = 218081

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 340   agggtctctcgtgtttctgtttct 363
             ||||||||| ||||||||||||||
Sbjct: 18296 agggtctctggtgtttctgtttct 18319
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>gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome 3, complete sequence
          Length = 195860

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 404    cttgccactgtcattcaaga 423
              ||||||||||||||||||||
Sbjct: 130820 cttgccactgtcattcaaga 130839
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>gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, complete sequence
          Length = 92959

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   ggtcagtttatccttaccag 237
             ||||||||||||||||||||
Sbjct: 40867 ggtcagtttatccttaccag 40886
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>gb|AC016644.9| Homo sapiens chromosome 5 clone RP11-52M14, complete sequence
          Length = 157751

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    ggtgtgccaacactgctgcc 313
              ||||||||||||||||||||
Sbjct: 150575 ggtgtgccaacactgctgcc 150594
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 417     ttcaagaacggcatgttcgc 436
               ||||||||||||||||||||
Sbjct: 2584316 ttcaagaacggcatgttcgc 2584335
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>gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    ggtgtgccaacactgctgcc 313
              ||||||||||||||||||||
Sbjct: 109579 ggtgtgccaacactgctgcc 109598
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>dbj|AB073220.1| Vibrio cholerae non-O1 vcaM gene for ABC-type multidrug efflux pump,
            complete cds
          Length = 2394

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 215  tgcggtcagtttatccttac 234
            ||||||||||||||||||||
Sbjct: 1158 tgcggtcagtttatccttac 1177
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>gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chromosome unknown, complete
              sequence
          Length = 179999

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    ggtgtgccaacactgctgcc 313
              ||||||||||||||||||||
Sbjct: 114016 ggtgtgccaacactgctgcc 114035
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>emb|AJ276073.1|BTH276073 Riftia pachyptila inactive transposase
          Length = 495

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 61 aaaaaccttactctaccaac 80
          ||||||||||||||||||||
Sbjct: 50 aaaaaccttactctaccaac 69


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,469,754
Number of Sequences: 3902068
Number of extensions: 3469754
Number of successful extensions: 57880
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57793
Number of HSP's gapped (non-prelim): 87
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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