ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25e11 |
|---|---|
| Clone Library Name | barley_pub |
>XTH7_ARATH (Q8LER3) Probable xyloglucan endotransglucosylase/hydrolase protein| 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) Length = 293 Score = 35.8 bits (81), Expect = 0.043 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = -1 Query: 415 PSPGVLWCGTEPAE----STHFNLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTRPK 248 P PG C S + LSP +WVR + +++YDYCTD+S P Sbjct: 232 PVPGPADCPANSKNWWEGSAYHQLSPVEARSYRWVR-VNHMVYDYCTDKS---RFPVPPP 287 Query: 247 ECS 239 ECS Sbjct: 288 ECS 290
>XTH_TOBAC (P93349) Probable xyloglucan endotransglucosylase/hydrolase protein| precursor (EC 2.4.1.207) Length = 295 Score = 32.7 bits (73), Expect = 0.37 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = -1 Query: 334 LQWVRDMGYVIYDYCTDRSNRYNDTTRPKECS 239 L+WVR Y IY+YCTDR RY T P EC+ Sbjct: 263 LRWVRQK-YTIYNYCTDR-KRY--PTLPPECT 290
>XTH6_ARATH (Q8LF99) Probable xyloglucan endotransglucosylase/hydrolase protein| 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) Length = 292 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -1 Query: 415 PSPGVLWCGTEPAE----STHFNLSPKARADLQWVRDMGYVIYDYCTDRS 278 P PG +C + P + +L+ +WVR + +++YDYCTDRS Sbjct: 233 PVPGPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVR-VNHMVYDYCTDRS 281
>XTH_BRAOB (Q6YDN9) Xyloglucan endotransglucosylase/hydrolase precursor (EC| 2.4.1.207) (BobXET16A) Length = 295 Score = 32.3 bits (72), Expect = 0.48 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = -1 Query: 421 CQPSPGVLWCGTEPA----ESTHFNLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTR 254 CQ S +C T+ ++ +L + L+WVR M + IY+YCTDR+ Sbjct: 230 CQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWVR-MKWTIYNYCTDRT---RFPVM 285 Query: 253 PKEC 242 P EC Sbjct: 286 PAEC 289
>XTHA_PHAAN (Q41638) Xyloglucan endotransglucosylase/hydrolase protein A| precursor (EC 2.4.1.207) (VaXTH1) Length = 292 Score = 32.3 bits (72), Expect = 0.48 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = -1 Query: 421 CQPSPGVLWCGTEPA----ESTHFNLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTR 254 C+ S +C T+ + +L L WVR+ Y IY+YCTDR RY+ Sbjct: 227 CEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNK-YTIYNYCTDR-KRYSQV-- 282 Query: 253 PKECS 239 P EC+ Sbjct: 283 PPECT 287
>XTH8_ARATH (Q8L9A9) Probable xyloglucan endotransglucosylase/hydrolase protein| 8 precursor (EC 2.4.1.207) (At-XTH8) (XTH-8) Length = 292 Score = 32.3 bits (72), Expect = 0.48 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -1 Query: 424 WCQPSPGVLWCGTEPAESTH--FNLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTRP 251 W P P + TE + ++LS + D WV+ V+YDYC D S R+ T P Sbjct: 228 WKDPFPACVSTTTENWWDQYDAWHLSKTQKMDYAWVQ-RNLVVYDYCKD-SERF--PTLP 283 Query: 250 KECSL 236 ECS+ Sbjct: 284 WECSI 288
>XTH4_ARATH (Q39099) Xyloglucan endotransglucosylase/hydrolase protein 4| precursor (EC 2.4.1.207) (At-XTH4) (XTH-4) Length = 296 Score = 31.6 bits (70), Expect = 0.81 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = -1 Query: 421 CQPSPGVLWCGTEPA----ESTHFNLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTR 254 CQ S +C T+ + +L + L+WVR M + IY+YCTDR+ Sbjct: 231 CQASVEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWVR-MKWTIYNYCTDRT---RFPVM 286 Query: 253 PKEC 242 P EC Sbjct: 287 PAEC 290
>XTH24_ARATH (P24806) Xyloglucan endotransglucosylase/hydrolase protein 24| precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) Length = 269 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -1 Query: 346 ARADLQWVRDMGYVIYDYCTDRSNRYNDTTRPKECS 239 ++A L+WV+ Y+IY+YCTD +R PKEC+ Sbjct: 234 SQARLKWVQK-NYMIYNYCTD--HRRFPQGAPKECT 266
>XTH10_ARATH (Q9ZVK1) Probable xyloglucan endotransglucosylase/hydrolase protein| 10 precursor (EC 2.4.1.207) (At-XTH10) (XTH-10) Length = 299 Score = 31.2 bits (69), Expect = 1.1 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = -1 Query: 331 QWVRDMGYVIYDYCTDRSNRYNDTTRPKECSL 236 +WVR ++IYDYC D R+N+ PKECSL Sbjct: 268 KWVRKY-HLIYDYCQD-YGRFNNKL-PKECSL 296
>XTH14_ARATH (Q9ZSU4) Xyloglucan endotransglucosylase/hydrolase protein 14| precursor (EC 2.4.1.207) (At-XTH14) (XTH-14) Length = 287 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = -1 Query: 421 CQPSPGVLWCGTEPAESTHF--NLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTRPK 248 C + W EP ++ L+P + WV+ ++IY+YCTD R+ PK Sbjct: 227 CSRTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQ-RDFMIYNYCTD-FKRFPQGL-PK 283 Query: 247 ECSL 236 EC L Sbjct: 284 ECKL 287
>XTH26_ARATH (Q9SVV2) Putative xyloglucan endotransglucosylase/hydrolase protein| 26 precursor (EC 2.4.1.207) (At-XTH26) (XTH-26) Length = 292 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -1 Query: 334 LQWVRDMGYVIYDYCTDRSNRYNDTTRPKECS 239 +Q +RD G++IYDYC D +NR+ P ECS Sbjct: 260 MQKIRD-GFMIYDYCKD-TNRFKG-VMPPECS 288
>XTHB_PHAAN (Q8LNZ5) Probable xyloglucan endotransglucosylase/hydrolase protein| B precursor (EC 2.4.1.207) (VaXTH2) Length = 293 Score = 30.4 bits (67), Expect = 1.8 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Frame = -1 Query: 421 CQPSPGVLWCGTEPA---ESTHF-NLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTR 254 C+ S +C T+ + T F +L L+WVR + IY+YCTDR+ RY Sbjct: 228 CEASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRQK-FTIYNYCTDRT-RYPQL-- 283 Query: 253 PKEC 242 P EC Sbjct: 284 PPEC 287
>YEW0_YEAST (P39959) Putative 50.3 kDa zinc finger protein in PAK1-RPS26B| intergenic region Length = 443 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +1 Query: 94 QSKKNQREYYKI-ISGRCCIANPNNESAGQQPLSLSQTKDHAFF 222 QSKK R+Y+K+ I G +N N+ S G +P+ + F Sbjct: 197 QSKKKVRDYFKLNIFGSSSSSNNNSNSLGCEPIQTENSSSQKMF 240
>XTH1_LYCES (Q40144) Probable xyloglucan endotransglucosylase/hydrolase 1| precursor (EC 2.4.1.207) (LeXTH1) Length = 296 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -1 Query: 334 LQWVRDMGYVIYDYCTDRSNRYNDTTRPKECS 239 L+WVR Y +Y+YCTD++ RY P EC+ Sbjct: 264 LRWVRQK-YTVYNYCTDKA-RY--PVPPPECT 291
>XTH5_ARATH (Q9XIW1) Probable xyloglucan endotransglucosylase/hydrolase protein| 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) Length = 293 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = -1 Query: 421 CQPSPGVLWCGTEPA----ESTHFNLSPKARADLQWVRDMGYVIYDYCTDR 281 C+ S +C T+ + +L L+WVR Y IY+YCTDR Sbjct: 228 CEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKR-YTIYNYCTDR 277
>XTH_SOYBN (Q39857) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) (Fragment) Length = 295 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -1 Query: 334 LQWVRDMGYVIYDYCTDRSNRYNDTTRPKEC 242 L+WVR Y IY+YCTD + RY + P EC Sbjct: 262 LRWVRQK-YTIYNYCTD-TKRYPHIS-PPEC 289
>XTH3_ARATH (Q9LJR7) Probable xyloglucan endotransglucosylase/hydrolase protein| 3 precursor (EC 2.4.1.207) (At-XTH3) (XTH-3) Length = 290 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -1 Query: 310 YVIYDYCTDRSNRYNDTTRPKEC 242 Y+ YDYCTDRS +Y T P+EC Sbjct: 270 YMNYDYCTDRS-KYQ--TPPREC 289
>XTH22_ARATH (Q38857) Xyloglucan endotransglucosylase/hydrolase protein 22| precursor (EC 2.4.1.207) (At-XTH22) (XTH-22) (Touch protein 4) Length = 284 Score = 29.3 bits (64), Expect = 4.0 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -1 Query: 391 GTEPAESTHFNLSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTRPKEC 242 GT L A+ ++WV+ Y+IY+YCTD + R+ PKEC Sbjct: 235 GTTTGSWLSQELDSTAQQRMRWVQ-RNYMIYNYCTD-AKRFPQGL-PKEC 281
>XTH13_ARATH (Q9FKL8) Putative xyloglucan endotransglucosylase/hydrolase protein| 13 precursor (EC 2.4.1.207) (At-XTH13) (XTH-13) Length = 284 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -1 Query: 358 LSPKARADLQWVRDMGYVIYDYCTDRSNRYNDTTRPKECSL 236 L+ ++WV+D Y+IY+YCTD R+ P EC+L Sbjct: 246 LNSNQYGQMKWVQD-DYMIYNYCTD-FKRFPQGL-PTECNL 283
>LEU2_CHRVO (Q7NUB6) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 471 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 351 GERLKCVDSAGSVPHHNTPGEGWHQ 425 G RL VDS S HNTP + W Q Sbjct: 49 GRRLWRVDSVVSTADHNTPTDHWDQ 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,512,455 Number of Sequences: 219361 Number of extensions: 902849 Number of successful extensions: 2088 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2056 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2088 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
