Clone Name | rbart25e11 |
---|---|
Clone Library Name | barley_pub |
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 46.1 bits (23), Expect = 0.093 Identities = 47/55 (85%) Strand = Plus / Plus Query: 69 tttgatttcagacaattcttatatgcagagtaaaaagaaccaacgggagtactac 123 ||||| ||||||||| |||||||||||| |||||| ||| | ||||||||||| Sbjct: 59990 tttgacttcagacaaaacttatatgcagactaaaaaacaccgaagggagtactac 60044
>gb|AF275895.1| Triticum turgidum subsp. durum microsatellite Dwm148 sequence Length = 145 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 87 ttatatgcagagtaaaaagaaccaacgggagtac 120 ||||||||||||||||||||| || |||||||| Sbjct: 123 ttatatgcagagtaaaaagaaacatagggagtac 90
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Minus Query: 56 aaactttgtaaaatttgatttcagacaattcttatatgcagagtaaaaag 105 ||||||||||||||||||||| | |||| ||| ||| | |||||||||| Sbjct: 31482 aaactttgtaaaatttgatttgacacaaatctaatactcggagtaaaaag 31433
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatt 75 ||||||||||||||||||||| Sbjct: 28628237 taaactttgtaaaatttgatt 28628257 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gtggactcggcgggctcggtg 389 ||||||||||||||||||||| Sbjct: 10709977 gtggactcggcgggctcggtg 10709997
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gtggactcggcgggctcggtg 389 ||||||||||||||||||||| Sbjct: 126891 gtggactcggcgggctcggtg 126911
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 407017 gcagtagtcgtagatagcgtagccc 406993
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 406193 gcagtagtcgtagatagcgtagccc 406169
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 406189 gcagtagtcgtagatagcgtagccc 406165
>gb|AF482553.1| Pinguicula pumila rps16 gene, partial intron sequence; chloroplast gene for chloroplast product Length = 810 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 tgtaaactttgtaaaatttgatttc 77 |||||||||| |||||||||||||| Sbjct: 256 tgtaaactttttaaaatttgatttc 232
>gb|AF482545.1| Pinguicula caerulea rps16 gene, partial intron sequence; chloroplast gene for chloroplast product Length = 796 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 tgtaaactttgtaaaatttgatttc 77 |||||||||| |||||||||||||| Sbjct: 255 tgtaaactttttaaaatttgatttc 231
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 4639035 gcagtagtcgtagatagcgtagccc 4639059 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaactttgtaaaatttgatt 75 |||||||||||||||||||| Sbjct: 14506093 aaactttgtaaaatttgatt 14506112
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatt 75 ||||||||||||||||||||| Sbjct: 28719561 taaactttgtaaaatttgatt 28719581 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gtggactcggcgggctcggtg 389 ||||||||||||||||||||| Sbjct: 10708078 gtggactcggcgggctcggtg 10708098
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 taaactttgtaaaatttgatt 75 ||||||||||||||||||||| Sbjct: 70659 taaactttgtaaaatttgatt 70639
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 91904 gcagtagtcgtagatagcgtagccc 91928
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 406059 gcagtagtcgtagatagcgtagccc 406035
>dbj|D13099.1|RICMT03 Oryza sativa (japonica cultivar-group) mitochondrial gene for tRNA-Arg, complete sequence, clone:pMTVSCT4 Length = 1620 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 28 gcagtagtcgtagatagcgtagccc 4
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 85 tcttatatgcagagtaaaaagaaccaacgggagtac 120 |||||||||| |||||||||||| || |||||||| Sbjct: 11358 tcttatatgcggagtaaaaagaaacagagggagtac 11323
>emb|CR790378.10| Zebrafish DNA sequence from clone DKEY-112E17 in linkage group 5, complete sequence Length = 160791 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||||||||||||| |||||||| Sbjct: 86880 taaactttgtaaaatctgatttca 86903
>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10, complete sequence Length = 121560 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||| |||||||||||||||||| Sbjct: 96540 taaacattgtaaaatttgatttca 96563
>emb|AL117334.29|HSJ687F11 Human DNA sequence from clone RP4-687F11 on chromosome 20 Contains the 5' end of the C20orf194 gene for chromosome 20 open reading frame 194, the UBE2V1P1 gene for ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 and a CpG island, complete sequence Length = 92969 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 taaaatttgatttcagacaa 83 |||||||||||||||||||| Sbjct: 75962 taaaatttgatttcagacaa 75943
>gb|AE008912.1| Salmonella typhimurium LT2, section 216 of 220 of the complete genome Length = 20216 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 8064 cagtgggcgatgctgtatagcgaa 8087
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gcgcacccactgcaggtcgg 339 |||||||||||||||||||| Sbjct: 29746 gcgcacccactgcaggtcgg 29727
>emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 20/20 Length = 88037 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 7126 cagtgggcgatgctgtatagcgaa 7149
>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence Length = 171724 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||||||||||| |||||||||| Sbjct: 107169 taaactttgtaaattttgatttca 107192
>gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194991 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaaatttgatttcagacaat 84 |||||||||||||||||||| Sbjct: 148564 aaaatttgatttcagacaat 148583
>gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, complete sequence Length = 151353 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 ttatatgcagagtaaaaagaacca 110 ||||||| |||||||||||||||| Sbjct: 133181 ttatatggagagtaaaaagaacca 133158
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ctgcaggtcggcgcgcgcct 348 |||||||||||||||||||| Sbjct: 68160 ctgcaggtcggcgcgcgcct 68141
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 69 tttgatttcagacaattcttatatgcagagtaaaaa 104 ||||| ||| ||||| ||||||||||||||||||| Sbjct: 403987 tttgacttccgacaaaacttatatgcagagtaaaaa 404022
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gcgcacccactgcaggtcgg 339 |||||||||||||||||||| Sbjct: 30554038 gcgcacccactgcaggtcgg 30554019
>emb|BX649481.10| Zebrafish DNA sequence from clone CH211-103D13 in linkage group 4, complete sequence Length = 192230 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 taaactttgtaaaatttgatttca 78 ||||| |||||||||||||||||| Sbjct: 14445 taaacattgtaaaatttgatttca 14422
>gb|DQ317420.1| Setaria italica KNOTTED1 homeodomain protein (KN1) mRNA, partial cds Length = 1032 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 ctcggcgggctcggtgccgc 393 |||||||||||||||||||| Sbjct: 424 ctcggcgggctcggtgccgc 443
>gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (KN1) mRNA, partial cds Length = 1002 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 ctcggcgggctcggtgccgc 393 |||||||||||||||||||| Sbjct: 430 ctcggcgggctcggtgccgc 449
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 4504063 cagtgggcgatgctgtatagcgaa 4504086
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1294_G06 Length = 115468 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaactttgtaaaatttgatt 75 |||||||||||||||||||| Sbjct: 4382 aaactttgtaaaatttgatt 4401
>emb|AL953907.19| Zebrafish DNA sequence from clone CH211-229I14, complete sequence Length = 151514 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtaaactttgtaaaatttga 73 |||||||||||||||||||| Sbjct: 49823 gtaaactttgtaaaatttga 49842
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 4711050 cagtgggcgatgctgtatagcgaa 4711073
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 4671791 cagtgggcgatgctgtatagcgaa 4671814
>dbj|AP005365.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB52G8, complete sequence Length = 103221 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ttatatgcagagtaaaaagaacca 110 ||||||| |||||||||||||||| Sbjct: 72536 ttatatggagagtaaaaagaacca 72559
>emb|BX005010.24| Zebrafish DNA sequence from clone DKEY-8F16 in linkage group 17, complete sequence Length = 236557 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||||||||||| |||||||||| Sbjct: 146179 taaactttgtaaattttgatttca 146202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,343,821 Number of Sequences: 3902068 Number of extensions: 3343821 Number of successful extensions: 64800 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64505 Number of HSP's gapped (non-prelim): 295 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)