>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 538

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
 Frame = -1

Query: 472 LYDFMGQYVSKNPRQAYVNYRDLDIG-----QNVVVDDATTFDSAKVWGEQYFTSNFQRH 308
           +Y+FM  +VSKNPR  YVN+ DLD+G        VV++A   + ++ WGE YF SN++R 
Sbjct: 440 VYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNA--IEISRSWGESYFLSNYERL 497

Query: 307 AAVKAAVDPTDYFRNEQSIPPL 242
              K  +DP + F + QSIPP+
Sbjct: 498 IRAKTLIDPNNVFNHPQSIPPM 519

>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 535

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = -1

Query: 469 YDFMGQYVSKNPRQAYVNYRDLDIGQNVVVDDATTFDSAKV---WGEQYFTSNFQRHAAV 299
           YD++  +VSK PR  YVN+ DLDIG     + ++T ++ ++   WGE+YF+SN++R    
Sbjct: 445 YDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYERLVKA 504

Query: 298 KAAVDPTDYFRNEQSIPPLVQ 236
           K  +DP + F + QSIPP+++
Sbjct: 505 KTLIDPNNVFNHPQSIPPMMK 525

>Y4GI_RHISN (P55465) Hypothetical protein y4gI|
          Length = 909

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 16  IDRRVFIHEVTAKLQFWLP--HPTSVALMHE 102
           +D R F H+V A  + W+P   P SV L H+
Sbjct: 138 VDGRHFYHDVKADFENWIPKLSPRSVVLFHD 168

>Y1286_METJA (Q58682) Hypothetical protein MJ1286|
          Length = 595

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 10  RQIDRRVFIHEVTAKLQFWLPHPTSVALMHELTEAQIALVHPTSV 144
           R+I  R FI+ V   L F+L   TS  ++H L    +  +H  SV
Sbjct: 497 REISARQFIYVVVIYLSFFLYIGTSYIMVHSLLPTLLKNIHGLSV 541

>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)|
          Length = 447

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 334 YFTSNFQRHAAVKAAVDPTDYFRNEQSIPP 245
           Y  ++F R  AVKA  DP + FR   +IPP
Sbjct: 413 YTPADFARLRAVKAQYDPDNMFRVNFNIPP 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,300,105
Number of Sequences: 219361
Number of extensions: 1205709
Number of successful extensions: 3045
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)