Clone Name | rbart25e10 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full insert mRNA sequence Length = 588 Score = 226 bits (114), Expect = 5e-56 Identities = 197/224 (87%), Gaps = 3/224 (1%) Strand = Plus / Minus Query: 249 gggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcactgccgcg 308 ||||||||||||||||||||||||||||| | ||||||||||| |||||||| | |||| Sbjct: 387 gggatgctctgctcgtttctgaagtagtccattggatccacggctgccttcaccgacgcg 328 Query: 309 tgcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtg 368 |||||||| |||||||| ||||||| ||||||||||||||||| |||| | | ||||| Sbjct: 327 agcctctggtagttgctcatgaagtagcgctcaccccaaaccttgccgctctgggacgtg 268 Query: 369 gt---ggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 425 || | ||||||| |||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 267 gtactgaggtcgtccgacaccgcgttctggccgatgtccaggtcccggaagttgacgtac 208 Query: 426 gcctgcctcgggttcttgctcacgtactgccccatgaagtcgta 469 |||||||||||||| |||||||||| ||||||||||||||||| Sbjct: 207 gcctgcctcgggttgctgctcacgtagtgccccatgaagtcgta 164
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 163 bits (82), Expect = 6e-37 Identities = 189/224 (84%), Gaps = 3/224 (1%) Strand = Plus / Plus Query: 243 aatggcgggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcact 302 ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 20436760 aatggcgggatgctctgctcgttcctgaagtagtcggtcggatccatcgccgccttcacc 20436819 Query: 303 gccgcgtgcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcg 362 || ||| |||||| |||||||| | |||||||| ||| ||||| |||||| |||| ||| Sbjct: 20436820 gcggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccgctctcg 20436879 Query: 363 aacgtggtggcgtcgt---ccaccaccacgttctggccgatgtccaggtcccggtagttg 419 |||||| | |||||| | ||||| |||||| ||||||||||||||||||| |||| Sbjct: 20436880 aacgtgctcacgtcgttcggcgccaccgcgttctcgccgatgtccaggtcccggaagttc 20436939 Query: 420 acgtacgcctgcctcgggttcttgctcacgtactgccccatgaa 463 |||||||||| |||||||| |||| |||||| || ||||||| Sbjct: 20436940 acgtacgcctccctcgggtcgctgctgacgtacggctccatgaa 20436983 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 384 accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 443 |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| |||| Sbjct: 20485187 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 20485246 Query: 444 ctcacgtactgccccatgaa 463 |||||| || || ||||||| Sbjct: 20485247 ctcacgaacggcgccatgaa 20485266 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 395 gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 454 ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| | Sbjct: 20420425 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 20420484 Query: 455 ccccatgaa 463 | ||||||| Sbjct: 20420485 ctccatgaa 20420493 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 242 caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 |||||| || |||||||||||||| |||||| |||||||||||||||| Sbjct: 20420266 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 20420313 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 245 tggcgggatgctctgctcgtttctgaagtagtcg 278 ||||||||||||||||||||| |||||||||||| Sbjct: 20485045 tggcgggatgctctgctcgttcctgaagtagtcg 20485078 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 405 aggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgta 451 ||||||| ||||||| | ||||||| ||| ||||||||||||||||| Sbjct: 20464873 aggtccctgtagttggcatacgcctccctggggttcttgctcacgta 20464919 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 246 ggcgggatgctctgctcgtttctgaagtagtcg 278 |||||||||||||||||||| | |||||||||| Sbjct: 20460574 ggcgggatgctctgctcgttccggaagtagtcg 20460606
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 163 bits (82), Expect = 6e-37 Identities = 189/224 (84%), Gaps = 3/224 (1%) Strand = Plus / Plus Query: 243 aatggcgggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcact 302 ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 9055 aatggcgggatgctctgctcgttcctgaagtagtcggtcggatccatcgccgccttcacc 9114 Query: 303 gccgcgtgcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcg 362 || ||| |||||| |||||||| | |||||||| ||| ||||| |||||| |||| ||| Sbjct: 9115 gcggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccgctctcg 9174 Query: 363 aacgtggtggcgtcgt---ccaccaccacgttctggccgatgtccaggtcccggtagttg 419 |||||| | |||||| | ||||| |||||| ||||||||||||||||||| |||| Sbjct: 9175 aacgtgctcacgtcgttcggcgccaccgcgttctcgccgatgtccaggtcccggaagttc 9234 Query: 420 acgtacgcctgcctcgggttcttgctcacgtactgccccatgaa 463 |||||||||| |||||||| |||| |||||| || ||||||| Sbjct: 9235 acgtacgcctccctcgggtcgctgctgacgtacggctccatgaa 9278 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 384 accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 443 |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| |||| Sbjct: 57482 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 57541 Query: 444 ctcacgtactgccccatgaa 463 |||||| || || ||||||| Sbjct: 57542 ctcacgaacggcgccatgaa 57561 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 245 tggcgggatgctctgctcgtttctgaagtagtcg 278 ||||||||||||||||||||| |||||||||||| Sbjct: 57340 tggcgggatgctctgctcgttcctgaagtagtcg 57373 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 405 aggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgta 451 ||||||| ||||||| | ||||||| ||| ||||||||||||||||| Sbjct: 37168 aggtccctgtagttggcatacgcctccctggggttcttgctcacgta 37214 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 246 ggcgggatgctctgctcgtttctgaagtagtcg 278 |||||||||||||||||||| | |||||||||| Sbjct: 32869 ggcgggatgctctgctcgttccggaagtagtcg 32901
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/154 (82%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||| |||||||||||| ||||||||| ||| ||||| |||||| ||||| | | || | Sbjct: 1474 gcctttggaagttgctcttgaagtacttctcgccccacaccttgccgctgctgtaggttg 1415 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | ||||| ||||||| | ||| ||||| ||| | ||||| ||||||| ||||||||| Sbjct: 1414 agatgtcgttcaccacctcattcctgccgaggtcgatgtccctgtagttggcgtacgcct 1355 Query: 430 gcctcgggttcttgctcacgtactgccccatgaa 463 |||| |||||||||||||||||| || ||||||| Sbjct: 1354 gcctggggttcttgctcacgtacggctccatgaa 1321 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtc 277 ||||||||||| ||||| || ||||||||||| Sbjct: 1538 ggcgggatgctttgctcattcctgaagtagtc 1507
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/154 (82%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||| |||||||||| | ||||||||| ||| |||||||||||| ||||| | || | Sbjct: 1474 gcctttggaagttgcccttgaagtacttctcgccccaaaccttgccgctgctataggttg 1415 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | ||||| ||||||| ||||| ||||| ||| | ||||| ||||||| ||||||||| Sbjct: 1414 agatgtcgttcaccacctcgttcctgccgaggtcaatgtccctgtagttggcgtacgcct 1355 Query: 430 gcctcgggttcttgctcacgtactgccccatgaa 463 |||| |||||||||||||||||| || ||||||| Sbjct: 1354 gcctggggttcttgctcacgtacggctccatgaa 1321 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtc 277 |||||||||||||||||||| ||||||||||| Sbjct: 1538 ggcgggatgctctgctcgttcctgaagtagtc 1507
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 384 accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 443 |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| |||| Sbjct: 1485 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 1426 Query: 444 ctcacgtactgccccatgaa 463 |||||| || || ||||||| Sbjct: 1425 ctcacgaacggcgccatgaa 1406 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 245 tggcgggatgctctgctcgtttctgaagtagtcg 278 ||||||||||||||||||||| |||||||||||| Sbjct: 1627 tggcgggatgctctgctcgttcctgaagtagtcg 1594
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 83.8 bits (42), Expect = 5e-13 Identities = 126/154 (81%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||| |||||||||| | ||||||||| ||| ||||| |||||| ||||| | | || | Sbjct: 1477 gcctttggaagttgcccttgaagtacttctcgccccacaccttgccgctgctgtaggttg 1418 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | ||||| ||||||| ||||| ||||| ||| | ||||| ||||||| ||||||||| Sbjct: 1417 agatgtcgttcaccacctcgttcctgccgaggtcgatgtccctgtagttggcgtacgcct 1358 Query: 430 gcctcgggttcttgctcacgtactgccccatgaa 463 |||| ||||||||||||||| || || ||||||| Sbjct: 1357 gcctggggttcttgctcacgaacggctccatgaa 1324 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtc 277 |||||||||||||||||||| ||||||||||| Sbjct: 1541 ggcgggatgctctgctcgttcctgaagtagtc 1510
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 395 gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 454 ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| | Sbjct: 143820 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 143879 Query: 455 ccccatgaa 463 | ||||||| Sbjct: 143880 ctccatgaa 143888 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 242 caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 |||||| || |||||||||||||| |||||| |||||||||||||||| Sbjct: 143661 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 143708
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 395 gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 454 ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| | Sbjct: 1441 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 1382 Query: 455 ccccatgaa 463 | ||||||| Sbjct: 1381 ctccatgaa 1373 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 242 caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 |||||| || |||||||||||||| |||||| |||||||||||||||| Sbjct: 1600 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 1553
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 79.8 bits (40), Expect = 7e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtgggatccac 1465 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 373 cgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcc 432 |||||| ||||||| ||||| |||| ||| | ||||| ||||||| |||| ||||||| Sbjct: 1381 cgtcgttcaccacctcgttcctcccgaggtcgatgtccctgtagttggcgtaggcctgcc 1322 Query: 433 tcgggttcttgctcacgta 451 | ||||||||||||||||| Sbjct: 1321 tggggttcttgctcacgta 1303
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 75.8 bits (38), Expect = 1e-10 Identities = 116/142 (81%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||||| |||||||| | ||||||| | || ||||| |||||| ||||| || | |||| Sbjct: 1444 gcctctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtaggtgg 1385 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | |||||| |||||| ||||| ||||| ||| | ||||| |||||| ||||||||| Sbjct: 1384 agacgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtacgcct 1325 Query: 430 gcctcgggttcttgctcacgta 451 |||| ||||||||||||||||| Sbjct: 1324 gcctggggttcttgctcacgta 1303 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtcggtgggatc 286 |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtaggatc 1468
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 75.8 bits (38), Expect = 1e-10 Identities = 116/142 (81%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||||| |||||||| | ||||||| | || ||||| |||||| ||||| || | |||| Sbjct: 1530 gcctctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtaggtgg 1471 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | |||||| |||||| ||||| ||||| ||| | ||||| |||||| ||||||||| Sbjct: 1470 agacgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtacgcct 1411 Query: 430 gcctcgggttcttgctcacgta 451 |||| ||||||||||||||||| Sbjct: 1410 gcctggggttcttgctcacgta 1389 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtcggtgggatc 286 |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1594 ggcgggatgctctgctcgttcctgaagtagtcggtaggatc 1554
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||| |||||||||| | ||||||||| ||| ||||| |||||| ||||| | | |||| Sbjct: 1483 gcctttggaagttgcccttgaagtacttctcgccccagaccttgccgctggcataggtgg 1424 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | ||||| |||||| ||||| ||||| ||| | ||||| ||||||| |||| |||| Sbjct: 1423 agatgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagttggcgtaggcct 1364 Query: 430 gcctcgggttcttgctcacgtactgccccatgaa 463 | || ||||||||||| |||||| || ||||||| Sbjct: 1363 gtctggggttcttgctgacgtacggctccatgaa 1330 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtc 277 |||||||||||||||||||| ||||||||||| Sbjct: 1547 ggcgggatgctctgctcgttcctgaagtagtc 1516
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 413 gtagttgacgtacgcctgcctcgggttcttgctcacgtactgccccatgaagtcgta 469 ||||||||||||||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 1392 gtagttgacgtacgcctgcctggggttcttgctgacgtagggcgtcatgaagtcgta 1336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 242 caatggcgggatgctctgctcgtttctgaagtagtc 277 ||||||||||||||||||||| || ||||||||||| Sbjct: 1563 caatggcgggatgctctgctcattcctgaagtagtc 1528
>gb|AY105422.1| Zea mays PCO091928 mRNA sequence Length = 664 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 242 caatggcgggatgctctgctcgtttctgaagtagtcg 278 |||||||||||||||||||||||| |||||||||||| Sbjct: 145 caatggcgggatgctctgctcgttcctgaagtagtcg 109
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 243 aatggcgggatgctctgctcgtttctgaagtagtcg 278 ||||||||||||||||||||||| |||||||||||| Sbjct: 1592 aatggcgggatgctctgctcgttcctgaagtagtcg 1557 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 387 acgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggtt 439 ||||||| ||||| ||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 1448 acgttctcgccgaggtccaggtccctgtagttgaagtaggcctccctcgggtt 1396
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 407 gtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactgccccatg 461 ||||| ||||||| |||| |||||||| |||||||||||||||||| || ||||| Sbjct: 1123 gtccctgtagttggcgtaggcctgcctggggttcttgctcacgtacggctccatg 1069
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 239 gaccaatggcgggatgctctgctcgtttctgaagtagtc 277 ||||| ||||||||||||||||||||| ||||||||||| Sbjct: 1545 gaccagtggcgggatgctctgctcgttcctgaagtagtc 1507 Score = 60.0 bits (30), Expect = 7e-06 Identities = 123/154 (79%) Strand = Plus / Minus Query: 310 gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369 |||| |||||||||| | ||||||||| ||||||||| || ||| ||||| | | |||| Sbjct: 1474 gcctttggaagttgcccttgaagtacttctcaccccacactttgccgctgctgtaggtgg 1415 Query: 370 tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429 | ||||| ||||||| | ||| ||| | ||| | ||||| ||||||| | ||||||| Sbjct: 1414 agatgtcgttcaccacctcattcctgccaaggtcgatgtccctgtagttggcatacgcct 1355 Query: 430 gcctcgggttcttgctcacgtactgccccatgaa 463 |||| || || |||||||||||| || ||||||| Sbjct: 1354 gcctgggatttttgctcacgtacggctccatgaa 1321
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 245 tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 ||||||||||||||||||||| | |||||||||| ||||||||| Sbjct: 73145 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 73189
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 245 tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 ||||||||||||||||||||| | |||||||||| ||||||||| Sbjct: 17005538 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 17005582
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 245 tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289 ||||||||||||||||||||| | |||||||||| ||||||||| Sbjct: 17100190 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 17100234
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 246 ggcgggatgctctgctcgtttctgaagtagtcg 278 |||||||||||||||||||| | |||||||||| Sbjct: 1613 ggcgggatgctctgctcgttccggaagtagtcg 1581
>emb|X78330.1|HVB191 H.vulgare (cv Bomi) B191 gene intron Length = 119 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 196 gcatacaaatacagtagtacaac 218 ||||||||||||||||||||||| Sbjct: 102 gcatacaaatacagtagtacaac 80
>gb|AC168055.3| Mus musculus BAC clone RP24-360I1 from chromosome 10, complete sequence Length = 206775 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 agaagcacaaattgccttggt 128 ||||||||||||||||||||| Sbjct: 6659 agaagcacaaattgccttggt 6639
>gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, complete sequence Length = 201670 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 agaagcacaaattgccttggt 128 ||||||||||||||||||||| Sbjct: 165936 agaagcacaaattgccttggt 165916
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ccaccacgttctggccgatg 401 |||||||||||||||||||| Sbjct: 55041 ccaccacgttctggccgatg 55022
>emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in linkage group 10, complete sequence Length = 269153 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 aactgacagaagcacaaatt 120 |||||||||||||||||||| Sbjct: 65136 aactgacagaagcacaaatt 65117
>gb|AC073156.19| Homo sapiens 3 BAC RP11-223L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131142 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tcctacttccgttttcacaa 151 |||||||||||||||||||| Sbjct: 60321 tcctacttccgttttcacaa 60302
>gb|AE004993.1| Halobacterium sp. NRC-1 section 24 of 170 of the complete genome Length = 10286 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cgtcgtccaccaccacgttc 392 |||||||||||||||||||| Sbjct: 8155 cgtcgtccaccaccacgttc 8174
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 aactgacagaagcacaaattgcct 124 |||||||| ||||||||||||||| Sbjct: 997525 aactgacacaagcacaaattgcct 997548
>gb|BC098940.1| Rattus norvegicus ATPase, class I, type 8B, member 4, mRNA (cDNA clone IMAGE:7455768), complete cds Length = 1618 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tgctcacttacgtccttgga 240 |||||||||||||||||||| Sbjct: 196 tgctcacttacgtccttgga 177
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gcgtcgtccaccaccacgtt 391 |||||||||||||||||||| Sbjct: 2751445 gcgtcgtccaccaccacgtt 2751426 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,100,395 Number of Sequences: 3902068 Number of extensions: 3100395 Number of successful extensions: 53184 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53001 Number of HSP's gapped (non-prelim): 183 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)