ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full ... 226 5e-56
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
3dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
4emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen ... 92 2e-15
5emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen ... 92 2e-15
6dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
7emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen al... 84 5e-13
8dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
10emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for ... 80 7e-12
11emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for ... 76 1e-10
12gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 pre... 76 1e-10
13emb|AJ862831.1| Secale cereale partial secc4 gene for pollen all... 68 3e-08
14gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 m... 66 1e-07
15gb|AY105422.1| Zea mays PCO091928 mRNA sequence 66 1e-07
16gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full ... 64 4e-07
17emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen all... 62 2e-06
18emb|AJ862830.1| Secale cereale partial secc4 gene for pollen all... 62 2e-06
19gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
22dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
23emb|X78330.1|HVB191 H.vulgare (cv Bomi) B191 gene intron 46 0.10
24gb|AC168055.3| Mus musculus BAC clone RP24-360I1 from chromosome... 42 1.6
25gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, co... 42 1.6
26gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.4
27emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in... 40 6.4
28gb|AC073156.19| Homo sapiens 3 BAC RP11-223L18 (Roswell Park Can... 40 6.4
29gb|AE004993.1| Halobacterium sp. NRC-1 section 24 of 170 of the ... 40 6.4
30gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 6.4
31gb|BC098940.1| Rattus norvegicus ATPase, class I, type 8B, membe... 40 6.4
32gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.4

>gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full insert mRNA
           sequence
          Length = 588

 Score =  226 bits (114), Expect = 5e-56
 Identities = 197/224 (87%), Gaps = 3/224 (1%)
 Strand = Plus / Minus

                                                                       
Query: 249 gggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcactgccgcg 308
           |||||||||||||||||||||||||||||  | ||||||||||| |||||||| | ||||
Sbjct: 387 gggatgctctgctcgtttctgaagtagtccattggatccacggctgccttcaccgacgcg 328

                                                                       
Query: 309 tgcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtg 368
            |||||||| |||||||| |||||||  ||||||||||||||||| |||| | | |||||
Sbjct: 327 agcctctggtagttgctcatgaagtagcgctcaccccaaaccttgccgctctgggacgtg 268

                                                                       
Query: 369 gt---ggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 425
           ||   |  |||||||  |||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 267 gtactgaggtcgtccgacaccgcgttctggccgatgtccaggtcccggaagttgacgtac 208

                                                       
Query: 426 gcctgcctcgggttcttgctcacgtactgccccatgaagtcgta 469
           ||||||||||||||  |||||||||| |||||||||||||||||
Sbjct: 207 gcctgcctcgggttgctgctcacgtagtgccccatgaagtcgta 164



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  163 bits (82), Expect = 6e-37
 Identities = 189/224 (84%), Gaps = 3/224 (1%)
 Strand = Plus / Plus

                                                                            
Query: 243      aatggcgggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcact 302
                ||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||| 
Sbjct: 20436760 aatggcgggatgctctgctcgttcctgaagtagtcggtcggatccatcgccgccttcacc 20436819

                                                                            
Query: 303      gccgcgtgcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcg 362
                || ||| |||||| ||||||||  | |||||||| ||| ||||| |||||| |||| |||
Sbjct: 20436820 gcggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccgctctcg 20436879

                                                                            
Query: 363      aacgtggtggcgtcgt---ccaccaccacgttctggccgatgtccaggtcccggtagttg 419
                |||||| |  ||||||    | ||||| |||||| ||||||||||||||||||| |||| 
Sbjct: 20436880 aacgtgctcacgtcgttcggcgccaccgcgttctcgccgatgtccaggtcccggaagttc 20436939

                                                            
Query: 420      acgtacgcctgcctcgggttcttgctcacgtactgccccatgaa 463
                |||||||||| ||||||||   |||| |||||| || |||||||
Sbjct: 20436940 acgtacgcctccctcgggtcgctgctgacgtacggctccatgaa 20436983



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 384      accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 443
                |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| ||||
Sbjct: 20485187 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 20485246

                                    
Query: 444      ctcacgtactgccccatgaa 463
                |||||| || || |||||||
Sbjct: 20485247 ctcacgaacggcgccatgaa 20485266



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 395      gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 454
                ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 20420425 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 20420484

                         
Query: 455      ccccatgaa 463
                | |||||||
Sbjct: 20420485 ctccatgaa 20420493



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 242      caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
                |||||| || |||||||||||||| |||||| ||||||||||||||||
Sbjct: 20420266 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 20420313



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 245      tggcgggatgctctgctcgtttctgaagtagtcg 278
                ||||||||||||||||||||| ||||||||||||
Sbjct: 20485045 tggcgggatgctctgctcgttcctgaagtagtcg 20485078



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 405      aggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgta 451
                ||||||| ||||||| | ||||||| ||| |||||||||||||||||
Sbjct: 20464873 aggtccctgtagttggcatacgcctccctggggttcttgctcacgta 20464919



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 246      ggcgggatgctctgctcgtttctgaagtagtcg 278
                |||||||||||||||||||| | ||||||||||
Sbjct: 20460574 ggcgggatgctctgctcgttccggaagtagtcg 20460606



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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0659D09
          Length = 168253

 Score =  163 bits (82), Expect = 6e-37
 Identities = 189/224 (84%), Gaps = 3/224 (1%)
 Strand = Plus / Plus

                                                                        
Query: 243  aatggcgggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcact 302
            ||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||| 
Sbjct: 9055 aatggcgggatgctctgctcgttcctgaagtagtcggtcggatccatcgccgccttcacc 9114

                                                                        
Query: 303  gccgcgtgcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcg 362
            || ||| |||||| ||||||||  | |||||||| ||| ||||| |||||| |||| |||
Sbjct: 9115 gcggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccgctctcg 9174

                                                                        
Query: 363  aacgtggtggcgtcgt---ccaccaccacgttctggccgatgtccaggtcccggtagttg 419
            |||||| |  ||||||    | ||||| |||||| ||||||||||||||||||| |||| 
Sbjct: 9175 aacgtgctcacgtcgttcggcgccaccgcgttctcgccgatgtccaggtcccggaagttc 9234

                                                        
Query: 420  acgtacgcctgcctcgggttcttgctcacgtactgccccatgaa 463
            |||||||||| ||||||||   |||| |||||| || |||||||
Sbjct: 9235 acgtacgcctccctcgggtcgctgctgacgtacggctccatgaa 9278



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 384   accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 443
             |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| ||||
Sbjct: 57482 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 57541

                                 
Query: 444   ctcacgtactgccccatgaa 463
             |||||| || || |||||||
Sbjct: 57542 ctcacgaacggcgccatgaa 57561



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                               
Query: 245   tggcgggatgctctgctcgtttctgaagtagtcg 278
             ||||||||||||||||||||| ||||||||||||
Sbjct: 57340 tggcgggatgctctgctcgttcctgaagtagtcg 57373



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 405   aggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgta 451
             ||||||| ||||||| | ||||||| ||| |||||||||||||||||
Sbjct: 37168 aggtccctgtagttggcatacgcctccctggggttcttgctcacgta 37214



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 246   ggcgggatgctctgctcgtttctgaagtagtcg 278
             |||||||||||||||||||| | ||||||||||
Sbjct: 32869 ggcgggatgctctgctcgttccggaagtagtcg 32901



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>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4,
            allele B
          Length = 1603

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||| |||||||||||| ||||||||| ||| ||||| |||||| |||||  | | || |
Sbjct: 1474 gcctttggaagttgctcttgaagtacttctcgccccacaccttgccgctgctgtaggttg 1415

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             |  ||||| ||||||| | |||  ||||| ||| | ||||| ||||||| |||||||||
Sbjct: 1414 agatgtcgttcaccacctcattcctgccgaggtcgatgtccctgtagttggcgtacgcct 1355

                                              
Query: 430  gcctcgggttcttgctcacgtactgccccatgaa 463
            |||| |||||||||||||||||| || |||||||
Sbjct: 1354 gcctggggttcttgctcacgtacggctccatgaa 1321



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 246  ggcgggatgctctgctcgtttctgaagtagtc 277
            ||||||||||| ||||| || |||||||||||
Sbjct: 1538 ggcgggatgctttgctcattcctgaagtagtc 1507



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>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4,
            allele A
          Length = 1603

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 127/154 (82%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||| |||||||||| | ||||||||| ||| |||||||||||| |||||    | || |
Sbjct: 1474 gcctttggaagttgcccttgaagtacttctcgccccaaaccttgccgctgctataggttg 1415

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             |  ||||| ||||||| |||||  ||||| ||| | ||||| ||||||| |||||||||
Sbjct: 1414 agatgtcgttcaccacctcgttcctgccgaggtcaatgtccctgtagttggcgtacgcct 1355

                                              
Query: 430  gcctcgggttcttgctcacgtactgccccatgaa 463
            |||| |||||||||||||||||| || |||||||
Sbjct: 1354 gcctggggttcttgctcacgtacggctccatgaa 1321



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 246  ggcgggatgctctgctcgtttctgaagtagtc 277
            |||||||||||||||||||| |||||||||||
Sbjct: 1538 ggcgggatgctctgctcgttcctgaagtagtc 1507



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>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full
            insert sequence
          Length = 1972

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 384  accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 443
            |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| ||||
Sbjct: 1485 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 1426

                                
Query: 444  ctcacgtactgccccatgaa 463
            |||||| || || |||||||
Sbjct: 1425 ctcacgaacggcgccatgaa 1406



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 245  tggcgggatgctctgctcgtttctgaagtagtcg 278
            ||||||||||||||||||||| ||||||||||||
Sbjct: 1627 tggcgggatgctctgctcgttcctgaagtagtcg 1594



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>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4
          Length = 1608

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 126/154 (81%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||| |||||||||| | ||||||||| ||| ||||| |||||| |||||  | | || |
Sbjct: 1477 gcctttggaagttgcccttgaagtacttctcgccccacaccttgccgctgctgtaggttg 1418

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             |  ||||| ||||||| |||||  ||||| ||| | ||||| ||||||| |||||||||
Sbjct: 1417 agatgtcgttcaccacctcgttcctgccgaggtcgatgtccctgtagttggcgtacgcct 1358

                                              
Query: 430  gcctcgggttcttgctcacgtactgccccatgaa 463
            |||| ||||||||||||||| || || |||||||
Sbjct: 1357 gcctggggttcttgctcacgaacggctccatgaa 1324



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 246  ggcgggatgctctgctcgtttctgaagtagtc 277
            |||||||||||||||||||| |||||||||||
Sbjct: 1541 ggcgggatgctctgctcgttcctgaagtagtc 1510



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>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016D02
          Length = 157822

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                          
Query: 395    gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 454
              ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 143820 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 143879

                       
Query: 455    ccccatgaa 463
              | |||||||
Sbjct: 143880 ctccatgaa 143888



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 242    caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
              |||||| || |||||||||||||| |||||| ||||||||||||||||
Sbjct: 143661 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 143708



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>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full
            insert sequence
          Length = 2030

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 395  gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 454
            ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 1441 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 1382

                     
Query: 455  ccccatgaa 463
            | |||||||
Sbjct: 1381 ctccatgaa 1373



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 242  caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
            |||||| || |||||||||||||| |||||| ||||||||||||||||
Sbjct: 1600 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 1553



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>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4,
            allele A1
          Length = 1567

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 246  ggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
            |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtgggatccac 1465



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 373  cgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcc 432
            |||||| ||||||| |||||   |||| ||| | ||||| ||||||| |||| |||||||
Sbjct: 1381 cgtcgttcaccacctcgttcctcccgaggtcgatgtccctgtagttggcgtaggcctgcc 1322

                               
Query: 433  tcgggttcttgctcacgta 451
            | |||||||||||||||||
Sbjct: 1321 tggggttcttgctcacgta 1303



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>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4,
            allele B1
          Length = 1580

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 116/142 (81%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||||| |||||||| | ||||||| | ||  ||||| |||||| ||||| || | ||||
Sbjct: 1444 gcctctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtaggtgg 1385

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             | ||||||  |||||| |||||  ||||| ||| | ||||| ||||||  |||||||||
Sbjct: 1384 agacgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtacgcct 1325

                                  
Query: 430  gcctcgggttcttgctcacgta 451
            |||| |||||||||||||||||
Sbjct: 1324 gcctggggttcttgctcacgta 1303



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 246  ggcgggatgctctgctcgtttctgaagtagtcggtgggatc 286
            |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtaggatc 1468



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>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA,
            complete cds
          Length = 1741

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 116/142 (81%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||||| |||||||| | ||||||| | ||  ||||| |||||| ||||| || | ||||
Sbjct: 1530 gcctctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtaggtgg 1471

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             | ||||||  |||||| |||||  ||||| ||| | ||||| ||||||  |||||||||
Sbjct: 1470 agacgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtacgcct 1411

                                  
Query: 430  gcctcgggttcttgctcacgta 451
            |||| |||||||||||||||||
Sbjct: 1410 gcctggggttcttgctcacgta 1389



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 246  ggcgggatgctctgctcgtttctgaagtagtcggtgggatc 286
            |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1594 ggcgggatgctctgctcgttcctgaagtagtcggtaggatc 1554



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>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele
            B
          Length = 1644

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 124/154 (80%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||| |||||||||| | ||||||||| ||| ||||| |||||| ||||| |  | ||||
Sbjct: 1483 gcctttggaagttgcccttgaagtacttctcgccccagaccttgccgctggcataggtgg 1424

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             |  |||||  |||||| |||||  ||||| ||| | ||||| ||||||| |||| ||||
Sbjct: 1423 agatgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagttggcgtaggcct 1364

                                              
Query: 430  gcctcgggttcttgctcacgtactgccccatgaa 463
            | || ||||||||||| |||||| || |||||||
Sbjct: 1363 gtctggggttcttgctgacgtacggctccatgaa 1330



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 246  ggcgggatgctctgctcgtttctgaagtagtc 277
            |||||||||||||||||||| |||||||||||
Sbjct: 1547 ggcgggatgctctgctcgttcctgaagtagtc 1516



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>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds
          Length = 1569

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 413  gtagttgacgtacgcctgcctcgggttcttgctcacgtactgccccatgaagtcgta 469
            ||||||||||||||||||||| ||||||||||| |||||  ||  ||||||||||||
Sbjct: 1392 gtagttgacgtacgcctgcctggggttcttgctgacgtagggcgtcatgaagtcgta 1336



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 242  caatggcgggatgctctgctcgtttctgaagtagtc 277
            ||||||||||||||||||||| || |||||||||||
Sbjct: 1563 caatggcgggatgctctgctcattcctgaagtagtc 1528



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>gb|AY105422.1| Zea mays PCO091928 mRNA sequence
          Length = 664

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                
Query: 242 caatggcgggatgctctgctcgtttctgaagtagtcg 278
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 145 caatggcgggatgctctgctcgttcctgaagtagtcg 109



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>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence
          Length = 1805

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 243  aatggcgggatgctctgctcgtttctgaagtagtcg 278
            ||||||||||||||||||||||| ||||||||||||
Sbjct: 1592 aatggcgggatgctctgctcgttcctgaagtagtcg 1557



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 387  acgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggtt 439
            ||||||| ||||| ||||||||||| |||||||| ||| |||| |||||||||
Sbjct: 1448 acgttctcgccgaggtccaggtccctgtagttgaagtaggcctccctcgggtt 1396



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>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4
          Length = 1272

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 407  gtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactgccccatg 461
            ||||| ||||||| |||| |||||||| |||||||||||||||||| || |||||
Sbjct: 1123 gtccctgtagttggcgtaggcctgcctggggttcttgctcacgtacggctccatg 1069



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>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele
            A
          Length = 1603

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 239  gaccaatggcgggatgctctgctcgtttctgaagtagtc 277
            ||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1545 gaccagtggcgggatgctctgctcgttcctgaagtagtc 1507



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 123/154 (79%)
 Strand = Plus / Minus

                                                                        
Query: 310  gcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtgg 369
            |||| |||||||||| | ||||||||| ||||||||| || ||| |||||  | | ||||
Sbjct: 1474 gcctttggaagttgcccttgaagtacttctcaccccacactttgccgctgctgtaggtgg 1415

                                                                        
Query: 370  tggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcct 429
             |  ||||| ||||||| | |||  ||| | ||| | ||||| ||||||| | |||||||
Sbjct: 1414 agatgtcgttcaccacctcattcctgccaaggtcgatgtccctgtagttggcatacgcct 1355

                                              
Query: 430  gcctcgggttcttgctcacgtactgccccatgaa 463
            |||| || || |||||||||||| || |||||||
Sbjct: 1354 gcctgggatttttgctcacgtacggctccatgaa 1321



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>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0085G12, complete sequence
          Length = 121470

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 245   tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
             ||||||||||||||||||||| | ||||||||||  |||||||||
Sbjct: 73145 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 73189



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 245      tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
                ||||||||||||||||||||| | ||||||||||  |||||||||
Sbjct: 17005538 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 17005582



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 245      tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 289
                ||||||||||||||||||||| | ||||||||||  |||||||||
Sbjct: 17100190 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 17100234



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>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full
            insert sequence
          Length = 1813

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 246  ggcgggatgctctgctcgtttctgaagtagtcg 278
            |||||||||||||||||||| | ||||||||||
Sbjct: 1613 ggcgggatgctctgctcgttccggaagtagtcg 1581



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>emb|X78330.1|HVB191 H.vulgare (cv Bomi) B191 gene intron
          Length = 119

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 196 gcatacaaatacagtagtacaac 218
           |||||||||||||||||||||||
Sbjct: 102 gcatacaaatacagtagtacaac 80



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>gb|AC168055.3| Mus musculus BAC clone RP24-360I1 from chromosome 10, complete
            sequence
          Length = 206775

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  agaagcacaaattgccttggt 128
            |||||||||||||||||||||
Sbjct: 6659 agaagcacaaattgccttggt 6639



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>gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, complete sequence
          Length = 201670

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    agaagcacaaattgccttggt 128
              |||||||||||||||||||||
Sbjct: 165936 agaagcacaaattgccttggt 165916



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   ccaccacgttctggccgatg 401
             ||||||||||||||||||||
Sbjct: 55041 ccaccacgttctggccgatg 55022



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>emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in linkage group 10,
             complete sequence
          Length = 269153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aactgacagaagcacaaatt 120
             ||||||||||||||||||||
Sbjct: 65136 aactgacagaagcacaaatt 65117



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>gb|AC073156.19| Homo sapiens 3 BAC RP11-223L18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   tcctacttccgttttcacaa 151
             ||||||||||||||||||||
Sbjct: 60321 tcctacttccgttttcacaa 60302



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>gb|AE004993.1| Halobacterium sp. NRC-1 section 24 of 170 of the complete genome
          Length = 10286

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  cgtcgtccaccaccacgttc 392
            ||||||||||||||||||||
Sbjct: 8155 cgtcgtccaccaccacgttc 8174



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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    aactgacagaagcacaaattgcct 124
              |||||||| |||||||||||||||
Sbjct: 997525 aactgacacaagcacaaattgcct 997548



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>gb|BC098940.1| Rattus norvegicus ATPase, class I, type 8B, member 4, mRNA (cDNA
           clone IMAGE:7455768), complete cds
          Length = 1618

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 221 tgctcacttacgtccttgga 240
           ||||||||||||||||||||
Sbjct: 196 tgctcacttacgtccttgga 177



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     gcgtcgtccaccaccacgtt 391
               ||||||||||||||||||||
Sbjct: 2751445 gcgtcgtccaccaccacgtt 2751426


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,100,395
Number of Sequences: 3902068
Number of extensions: 3100395
Number of successful extensions: 53184
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53001
Number of HSP's gapped (non-prelim): 183
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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