ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25e09 |
|---|---|
| Clone Library Name | barley_pub |
>ALG10_EMENI (Q5B0M8) Alpha-1,2 glucosyltransferase alg10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase alg10) (Dolichyl-phosphoglucose-dependent glucosyltransferase alg10) (Asparagine-linked glycosylation protein 10) Length = 608 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +3 Query: 150 SHTLGSLTNLLRGAYIAFDEASPLVTASGAGALSAAVRYRVTIDMVRT*GDKGPDGCIEG 329 S+ + +L LLRG+ D + T + A A+ +R + +D VR + P G Sbjct: 74 SYAVCALILLLRGSPEHLDPPALRATNAAAAAVLLPLRLQTALDTVRKQRNTRPSGAWLS 133 Query: 330 HTTLGCC 350 HT L C Sbjct: 134 HTVLNIC 140
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = -2 Query: 340 RVV*PSMQPSGPLSPYVLTMSMVTRYRTAADRAPAPEAVTRGDASSKA 197 +V+ P PSGP P + S + ++A + P T GDASS + Sbjct: 471 KVLPPRRLPSGPSLPSSSSSSSSSSSSSSAPQRPGGPTTTHGDASSSS 518
>HTF4_MOUSE (Q61286) Transcription factor 12 (Transcription factor HTF-4)| (E-box-binding protein) (DNA-binding protein HTF4) (Class A helix-loop-helix transcription factor ME1) Length = 706 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +2 Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277 SH R SY P + S+PP +SF R + + + H Sbjct: 271 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 312
>HTF4_CHICK (P30985) Transcription factor 12 (Transcription factor HTF-4)| (E-box-binding protein) (Class A helix-loop-helix transcription factor GE1) (Fragment) Length = 657 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +2 Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277 SH R SY P + S+PP +SF R + + + H Sbjct: 219 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 260
>HTF4_RAT (P51514) Transcription factor 12 (Transcription factor HTF-4)| (E-box-binding protein) (Salivary-specific cAMP response element-binding protein alpha) (SCBP alpha) (DNA-binding protein HTF4) Length = 707 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +2 Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277 SH R SY P + S+PP +SF R + + + H Sbjct: 271 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 312
>HTF4_HUMAN (Q99081) Transcription factor 12 (Transcription factor HTF-4)| (E-box-binding protein) (DNA-binding protein HTF4) Length = 682 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +2 Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277 SH R SY P + S+PP +SF R + + + H Sbjct: 271 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 312
>SCX7_CENLL (P59865) Sodium-channel modifier neurotoxin Cll7 precursor| Length = 85 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = -1 Query: 278 NGHSVSHCSR*SASAGSCYEGGCFVEGY 195 N + + C A G CY GC+ EG+ Sbjct: 41 NKYCIDECKEIGAGYGYCYGFGCYCEGF 68
>PDXH_SHISS (Q3Z1Z4) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 218 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 10 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 49
>PDXH_SHIDS (Q32FD5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 218 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 10 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 49
>PDXH_SHIBS (Q320Z5) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 218 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 10 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 49
>PDXH_ECOL6 (Q8FH87) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 218 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 10 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 49
>PDXH_ECO57 (Q8X647) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 218 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 10 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 49
>UCRIB_ANAVT (Q93SW6) Cytochrome b6-f complex iron-sulfur subunit 2 (EC| 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) Length = 178 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +3 Query: 219 LVTASGAGALSAAVRYRVTIDMVRT*GDKGPDGCIEGHTTLGC 347 LV ASG AL A + T VR G P G + T LGC Sbjct: 70 LVQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGC 112
>PDXH_SHIFL (P0AFI8) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 217 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 9 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 48
>PDXH_ECOLI (P0AFI7) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 217 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 149 VSHTRFSYKPSKGGLHSLRRSIP--PRNSFRRWRSIGCSAIPSD 274 ++H R Y +KGGL RR +P P F RW S C A +D Sbjct: 9 IAHLRREY--TKGGLR--RRDLPADPLTLFERWLSQACEAKLAD 48
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Frame = +3 Query: 111 SQTEKKECGNIDESHTLGSLTNLLRGAYI-----AFDEASPLVTASGAGALSAA 257 S T CG + T S TN + A A+P A+GAG+ +AA Sbjct: 2591 SSTNSNSCGTASSNQTNNSTTNSSHSSSAISSQSAITVAAPSAAATGAGSATAA 2644 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,802,158 Number of Sequences: 219361 Number of extensions: 836810 Number of successful extensions: 1791 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1791 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
