ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223468 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gagctttcttcttccatcata 32 ||||||||||||||||||||| Sbjct: 60941 gagctttcttcttccatcata 60921
>emb|AL096755.1|HS477J10A Human DNA sequence from clone RP3-477J10 on chromosome 22q13.31-13.33, complete sequence Length = 96678 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 actctgggctgctgcgggctc 356 ||||||||||||||||||||| Sbjct: 13741 actctgggctgctgcgggctc 13721
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ccggcgctggcgctctatcgg 252 ||||||||||||||||||||| Sbjct: 2788646 ccggcgctggcgctctatcgg 2788626
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gctttcttcttccatcataa 33 |||||||||||||||||||| Sbjct: 219048 gctttcttcttccatcataa 219029
>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175481 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 131258 tgcagtgcgataccgagtga 131277
>ref|NM_057340.2| Drosophila melanogaster Protein tyrosine phosphatase 61F CG9181-RB, transcript variant B (Ptp61F), mRNA Length = 1904 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 39 tgcagtgcgataccgagtga 20
>ref|NM_057339.3| Drosophila melanogaster Protein tyrosine phosphatase 61F CG9181-RA, transcript variant A (Ptp61F), mRNA Length = 2556 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 39 tgcagtgcgataccgagtga 20
>emb|AL114088.1|CNS01BDC Botrytis cinerea strain T4 cDNA library Length = 446 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttcttcttccatcataaca 35 |||||||||||||||||||| Sbjct: 332 tttcttcttccatcataaca 313
>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete sequence Length = 302131 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 118000 tgcagtgcgataccgagtga 118019
>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230), DS03404 (D231), DS06962 (D232), and DS07291 (D240)), complete sequence Length = 268369 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 94408 tgcagtgcgataccgagtga 94389
>gb|L11249.1|DROPTP01 D.melanogaster protein tyrosine phosphatase gene, exon 1 Length = 314 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 40 tgcagtgcgataccgagtga 21
>gb|L11253.1|DROPTPB D.melanogaster protein tyrosine phosphatase mRNA, complete cds Length = 2165 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 40 tgcagtgcgataccgagtga 21
>gb|L11252.1|DROPTPA D.melanogaster protein tyrosine phosphatase mRNA, complete cds Length = 1906 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgcagtgcgataccgagtga 273 |||||||||||||||||||| Sbjct: 40 tgcagtgcgataccgagtga 21 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,409,224 Number of Sequences: 3902068 Number of extensions: 2409224 Number of successful extensions: 39576 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39540 Number of HSP's gapped (non-prelim): 36 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
