ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, com... 38 1.5
2gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence 38 1.5
3gb|AF038110.1|AF038110 HIV-1 isolate TZB0060 from Tanzania, gp12... 38 1.5
4gb|AY619849.1| HIV-1 isolate C4.8D clone 8 from Sweden envelope ... 38 1.5
5gb|AY619846.1| HIV-1 isolate C4.53D clone 53 from Sweden envelop... 38 1.5
6gb|AY619844.1| HIV-1 isolate C4.51D clone 51 from Sweden envelop... 38 1.5
7gb|AY619840.1| HIV-1 isolate C4.43D clone 43 from Sweden envelop... 38 1.5
8gb|AY619834.1| HIV-1 isolate C4.3D clone 3 from Sweden envelope ... 38 1.5
9gb|AY619825.1| HIV-1 isolate C4.12bD clone 12 from Sweden envelo... 38 1.5
10gb|AY619824.1| HIV-1 isolate C4.12aD clone 12 from Sweden envelo... 38 1.5
11gb|AY619821.1| HIV-1 isolate C4.1D clone 1 from Sweden envelope ... 38 1.5
12gb|AY619808.1| HIV-1 isolate C2.6D clone 6 from Sweden envelope ... 38 1.5
13gb|AY619807.1| HIV-1 isolate C2.51D clone 51 from Sweden envelop... 38 1.5
14gb|AY619776.1| HIV-1 isolate M3.31D clone 31 from Sweden envelop... 38 1.5
15gb|AF201804.1|AF201804 HIV-1 clone H35-10 from Uganda, envelope ... 38 1.5
16gb|AF201803.1|AF201803 HIV-1 clone H35-9 from Uganda, envelope g... 38 1.5
17gb|AF201802.1|AF201802 HIV-1 clone H35-8 from Uganda, envelope g... 38 1.5
18gb|AF201800.1|AF201800 HIV-1 clone H35-6 from Uganda, envelope g... 38 1.5
19gb|AF201799.1|AF201799 HIV-1 clone H35-5 from Uganda, envelope g... 38 1.5
20gb|AF201798.1|AF201798 HIV-1 clone H35-4 from Uganda, envelope g... 38 1.5
21gb|AF201797.1|AF201797 HIV-1 clone H35-3 from Uganda, envelope g... 38 1.5
22gb|AF201796.1|AF201796 HIV-1 clone H35-2 from Uganda, envelope g... 38 1.5
23gb|AF201795.1|AF201795 HIV-1 clone H35-1 from Uganda, envelope g... 38 1.5
24gb|U16042.1|HIV1U16042 Human immunodeficiency virus type 1 clone... 38 1.5
25gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer... 36 5.7
26gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 36 5.7
27gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C... 36 5.7
28gb|DQ410403.1| HIV-1 isolate H26v1e14.2 from USA envelope glycop... 36 5.7
29gb|DQ410402.1| HIV-1 isolate H26v1e3.1 from USA envelope glycopr... 36 5.7
30gb|DQ410394.1| HIV-1 isolate H26v2ed11 from USA envelope glycopr... 36 5.7
31gb|DQ410389.1| HIV-1 isolate H26v2ed12 from USA envelope glycopr... 36 5.7
32gb|DQ410388.1| HIV-1 isolate H26v2ed10 from USA nonfunctional en... 36 5.7
33gb|AY352657.1| HIV-1 isolate UG266 from Uganda, complete genome 36 5.7
34gb|AC117235.3| Mus musculus BAC clone RP23-415F18 from 17, compl... 36 5.7
35gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, com... 36 5.7
36emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome 3, B... 36 5.7
37gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 36 5.7
38gb|AF350904.1| Partula affinis haplotype A1 cytochrome b gene, p... 36 5.7
39gb|AY619852.1| HIV-1 isolate C4.16bD clone 16 from Sweden envelo... 36 5.7
40gb|AY619845.1| HIV-1 isolate C4.52D clone 52 from Sweden envelop... 36 5.7
41gb|AY619839.1| HIV-1 isolate C4.42D clone 42 from Sweden envelop... 36 5.7
42gb|AY619837.1| HIV-1 isolate C4.35D clone 35 from Sweden envelop... 36 5.7
43gb|AY619835.1| HIV-1 isolate C4.31D clone 31 from Sweden envelop... 36 5.7
44gb|AY619833.1| HIV-1 isolate C4.29D clone 29 from Sweden envelop... 36 5.7
45gb|AY619831.1| HIV-1 isolate C4.27D clone 27 from Sweden envelop... 36 5.7
46gb|AY619828.1| HIV-1 isolate C4.19D clone 19 from Sweden envelop... 36 5.7
47gb|AY619826.1| HIV-1 isolate C4.16aD clone 16 from Sweden envelo... 36 5.7
48gb|AY619817.1| HIV-1 isolate C1.R5.pi1 clone 1 from Sweden envel... 36 5.7
49gb|AY619812.1| HIV-1 isolate C1.R5.pi2 clone 1 from Sweden envel... 36 5.7
50gb|AY619809.1| HIV-1 isolate C2.9D clone 9 from Sweden envelope ... 36 5.7
51gb|AY619800.1| HIV-1 isolate C2.30bD clone 30 from Sweden envelo... 36 5.7
52gb|AY619799.1| HIV-1 isolate C2.30aD clone 30 from Sweden envelo... 36 5.7
53gb|AY619798.1| HIV-1 isolate C2.29D clone 29 from Sweden envelop... 36 5.7
54gb|AY619797.1| HIV-1 isolate C2.21D clone 21 from Sweden envelop... 36 5.7
55gb|AY619796.1| HIV-1 isolate C1.7D clone 7 from Sweden envelope ... 36 5.7
56gb|AY619795.1| HIV-1 isolate C1.53D clone 53 from Sweden envelop... 36 5.7
57gb|AY619794.1| HIV-1 isolate C1.50D clone 50 from Sweden envelop... 36 5.7
58gb|AY619793.1| HIV-1 isolate C1.47D clone 47 from Sweden envelop... 36 5.7
59gb|AY619792.1| HIV-1 isolate C1.46D clone 46 from Sweden envelop... 36 5.7
60gb|AY619791.1| HIV-1 isolate C1.40D clone 40 from Sweden envelop... 36 5.7
61gb|AY619790.1| HIV-1 isolate C1.4D clone 4 from Sweden envelope ... 36 5.7
62gb|AY619789.1| HIV-1 isolate C1.38D clone 38 from Sweden envelop... 36 5.7
63gb|AY619788.1| HIV-1 isolate C1.32D clone 32 from Sweden envelop... 36 5.7
64gb|AY619787.1| HIV-1 isolate C1.31D clone 31 from Sweden envelop... 36 5.7
65gb|AY619786.1| HIV-1 isolate C1.30D clone 30 from Sweden envelop... 36 5.7
66gb|AY619785.1| HIV-1 isolate C1.28D clone 28 from Sweden envelop... 36 5.7
67gb|AY619784.1| HIV-1 isolate C1.27bD clone 27 from Sweden envelo... 36 5.7
68gb|AY619783.1| HIV-1 isolate C1.27aD clone 27 from Sweden envelo... 36 5.7
69gb|AY619782.1| HIV-1 isolate C1.19D clone 19 from Sweden envelop... 36 5.7
70gb|AY619781.1| HIV-1 isolate C1.14D clone 14 from Sweden envelop... 36 5.7
71gb|AY619780.1| HIV-1 isolate C1.13D clone 13 from Sweden envelop... 36 5.7
72gb|AY619779.1| HIV-1 isolate C1.11bD clone 11 from Sweden envelo... 36 5.7
73gb|AY619778.1| HIV-1 isolate C1.11aD clone 11 from Sweden envelo... 36 5.7
74gb|AY619777.1| HIV-1 isolate M3.R5.pi clone 3 from Sweden envelo... 36 5.7
75gb|AY619774.1| HIV-1 isolate M3.43D clone 43 from Sweden envelop... 36 5.7
76gb|AY619772.1| HIV-1 isolate M3.5D clone 5 from Sweden envelope ... 36 5.7
77gb|AY619771.1| HIV-1 isolate M3.3D clone 3 from Sweden envelope ... 36 5.7
78gb|AY619769.1| HIV-1 isolate M3.23D clone 23 from Sweden envelop... 36 5.7
79gb|AY619768.1| HIV-1 isolate M3.30D clone 30 from Sweden envelop... 36 5.7
80gb|AY619766.1| HIV-1 isolate M4.X4.ci clone 4 from Sweden envelo... 36 5.7
81gb|AY619763.1| HIV-1 isolate M1.X4.pi clone 1 from Sweden envelo... 36 5.7
82gb|AY619761.1| HIV-1 isolate M2.16D clone 16 from Sweden envelop... 36 5.7
83gb|AY619760.1| HIV-1 isolate M2.43D clone 43 from Sweden envelop... 36 5.7
84gb|AY619759.1| HIV-1 isolate M2.7D clone 7 from Sweden envelope ... 36 5.7
85gb|AY619758.1| HIV-1 isolate M2.50D clone 50 from Sweden envelop... 36 5.7
86gb|AY619757.1| HIV-1 isolate M2.6D clone 6 from Sweden envelope ... 36 5.7
87gb|AY619756.1| HIV-1 isolate M2.47D clone 47 from Sweden envelop... 36 5.7
88gb|AY619755.1| HIV-1 isolate M2.38D clone 38 from Sweden envelop... 36 5.7
89gb|AY619754.1| HIV-1 isolate M2.37D clone 37 from Sweden envelop... 36 5.7
90gb|AY619752.1| HIV-1 isolate M2.3D clone 3 from Sweden envelope ... 36 5.7
91gb|AY619749.1| HIV-1 isolate M2.21D clone 21 from Sweden envelop... 36 5.7
92gb|AY619748.1| HIV-1 isolate M2.2D clone 2 from Sweden envelope ... 36 5.7
93gb|AY619746.1| HIV-1 isolate M1.48D clone 48 from Sweden envelop... 36 5.7
94gb|AY619745.1| HIV-1 isolate M1.5D clone 5 from Sweden envelope ... 36 5.7
95gb|AY619740.1| HIV-1 isolate M1.32D clone 32 from Sweden envelop... 36 5.7
96gb|AY619739.1| HIV-1 isolate M1.31D clone 31 from Sweden envelop... 36 5.7
97gb|AY619736.1| HIV-1 isolate M1.25D clone 25 from Sweden envelop... 36 5.7
98gb|AY619735.1| HIV-1 isolate M1.21D clone 21 from Sweden envelop... 36 5.7
99gb|AY619732.1| HIV-1 isolate M2.1D clone 1 from Sweden envelope ... 36 5.7
100gb|AY619731.1| HIV-1 isolate M1.2bD clone 2 from Sweden envelope... 36 5.7
101gb|AY619730.1| HIV-1 isolate M1.2aD clone 2 from Sweden envelope... 36 5.7
102gb|AC133521.3| Mus musculus BAC clone RP23-189F22 from chromosom... 36 5.7
103gb|AC155924.2| Mus musculus BAC clone RP24-366C10 from 12, compl... 36 5.7
104emb|Z81069.1|CEF25H9 Caenorhabditis elegans Cosmid F25H9, comple... 36 5.7
105emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 i... 36 5.7
106gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, com... 36 5.7
107gb|U56330.1|HIV1U56330 Human immunodeficiency virus type 1 clone... 36 5.7
108gb|U56312.1|HIV1U56312 Human immunodeficiency virus type 1 clone... 36 5.7
109gb|U56311.1|HIV1U56311 Human immunodeficiency virus type 1 clone... 36 5.7
110gb|U56310.1|HIV1U56310 Human immunodeficiency virus type 1 clone... 36 5.7
111gb|U56306.1|HIV1U56306 Human immunodeficiency virus type 1 clone... 36 5.7
112gb|U56305.1|HIV1U56305 Human immunodeficiency virus type 1, clon... 36 5.7
113gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complet... 36 5.7
114gb|U56376.1|HIVU56376 Human immunodeficiency virus type 1 envelo... 36 5.7
115gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome... 36 5.7
116gb|L22947.1|HIV1UG266A Human immunodeficiency virus type 1 (UG26... 36 5.7
117gb|M98897.1|HIV3070E Human immunodeficiency virus type 1 (Uganda... 36 5.7
118gb|M98895.1|HIV3070B Human immunodeficiency virus type 1 (Uganda... 36 5.7 
>gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, complete sequence
          Length = 159454

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    agttttattccatcctttacatc 37
             ||||||||| |||||||||||||
Sbjct: 43201 agttttattgcatcctttacatc 43179
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>gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence
          Length = 150721

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 15     agttttattccatcctttacatc 37
              ||||||||| |||||||||||||
Sbjct: 101863 agttttattgcatcctttacatc 101885
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>gb|AF038110.1|AF038110 HIV-1 isolate TZB0060 from Tanzania, gp120 C2-C4 region (env) gene,
           partial cds
          Length = 664

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 206 aagttttattccatccttt 188
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>gb|AY619849.1| HIV-1 isolate C4.8D clone 8 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 259 aagttttattccatccttt 241
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>gb|AY619846.1| HIV-1 isolate C4.53D clone 53 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 259 aagttttattccatccttt 241
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>gb|AY619844.1| HIV-1 isolate C4.51D clone 51 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 256 aagttttattccatccttt 238
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>gb|AY619840.1| HIV-1 isolate C4.43D clone 43 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 259 aagttttattccatccttt 241
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>gb|AY619834.1| HIV-1 isolate C4.3D clone 3 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 256 aagttttattccatccttt 238
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>gb|AY619825.1| HIV-1 isolate C4.12bD clone 12 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 256 aagttttattccatccttt 238
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>gb|AY619824.1| HIV-1 isolate C4.12aD clone 12 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 256 aagttttattccatccttt 238
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>gb|AY619821.1| HIV-1 isolate C4.1D clone 1 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 259 aagttttattccatccttt 241
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>gb|AY619808.1| HIV-1 isolate C2.6D clone 6 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 256 aagttttattccatccttt 238
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>gb|AY619807.1| HIV-1 isolate C2.51D clone 51 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 256 aagttttattccatccttt 238
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>gb|AY619776.1| HIV-1 isolate M3.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 259 aagttttattccatccttt 241
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>gb|AF201804.1|AF201804 HIV-1 clone H35-10 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201803.1|AF201803 HIV-1 clone H35-9 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201802.1|AF201802 HIV-1 clone H35-8 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201800.1|AF201800 HIV-1 clone H35-6 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201799.1|AF201799 HIV-1 clone H35-5 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201798.1|AF201798 HIV-1 clone H35-4 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201797.1|AF201797 HIV-1 clone H35-3 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201796.1|AF201796 HIV-1 clone H35-2 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|AF201795.1|AF201795 HIV-1 clone H35-1 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 316 aagttttattccatccttt 298
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>gb|U16042.1|HIV1U16042 Human immunodeficiency virus type 1 clone XSH141L17 envelope
           glycoprotein (env) mRNA, V1-V5 regions, partial cds
          Length = 1075

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  aagttttattccatccttt 32
           |||||||||||||||||||
Sbjct: 679 aagttttattccatccttt 661
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>gb|AC153728.1| Mus musculus  BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 226417

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    aagttttattccatcctt 31
             ||||||||||||||||||
Sbjct: 66086 aagttttattccatcctt 66069
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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     ttattccatcctttacat 36
              ||||||||||||||||||
Sbjct: 777136 ttattccatcctttacat 777153
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>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
          Length = 126762

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    ttattccatcctttacat 36
             ||||||||||||||||||
Sbjct: 86084 ttattccatcctttacat 86101
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>gb|DQ410403.1| HIV-1 isolate H26v1e14.2 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 1012 aagttttattccatcctt 995
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>gb|DQ410402.1| HIV-1 isolate H26v1e3.1 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 1012 aagttttattccatcctt 995
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>gb|DQ410394.1| HIV-1 isolate H26v2ed11 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 1012 aagttttattccatcctt 995
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>gb|DQ410389.1| HIV-1 isolate H26v2ed12 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 1012 aagttttattccatcctt 995
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>gb|DQ410388.1| HIV-1 isolate H26v2ed10 from USA nonfunctional envelope glycoprotein
            (env) gene, complete sequence
          Length = 2547

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 1012 aagttttattccatcctt 995
to top
>gb|AY352657.1| HIV-1 isolate UG266 from Uganda, complete genome
          Length = 8986

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 6606 aagttttattccatcctt 6589
to top
>gb|AC117235.3| Mus musculus BAC clone RP23-415F18 from 17, complete sequence
          Length = 207331

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttttattccatcctttac 34
             ||||||||||||||||||
Sbjct: 75382 ttttattccatcctttac 75365
to top
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    aagttttattccatcctt 31
             ||||||||||||||||||
Sbjct: 17013 aagttttattccatcctt 16996
to top
>emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16
          Length = 104868

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    ttattccatcctttacat 36
             ||||||||||||||||||
Sbjct: 26708 ttattccatcctttacat 26691
to top
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     tttattccatcctttaca 35
              ||||||||||||||||||
Sbjct: 160927 tttattccatcctttaca 160910
to top
>gb|AF350904.1| Partula affinis haplotype A1 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 685

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 171 aagttttattccatcctt 188
to top
>gb|AY619852.1| HIV-1 isolate C4.16bD clone 16 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619845.1| HIV-1 isolate C4.52D clone 52 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619839.1| HIV-1 isolate C4.42D clone 42 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619837.1| HIV-1 isolate C4.35D clone 35 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619835.1| HIV-1 isolate C4.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619833.1| HIV-1 isolate C4.29D clone 29 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619831.1| HIV-1 isolate C4.27D clone 27 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619828.1| HIV-1 isolate C4.19D clone 19 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619826.1| HIV-1 isolate C4.16aD clone 16 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619817.1| HIV-1 isolate C1.R5.pi1 clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619812.1| HIV-1 isolate C1.R5.pi2 clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619809.1| HIV-1 isolate C2.9D clone 9 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619800.1| HIV-1 isolate C2.30bD clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619799.1| HIV-1 isolate C2.30aD clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619798.1| HIV-1 isolate C2.29D clone 29 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619797.1| HIV-1 isolate C2.21D clone 21 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 256 aagttttattccatcctt 239
to top
>gb|AY619796.1| HIV-1 isolate C1.7D clone 7 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619795.1| HIV-1 isolate C1.53D clone 53 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619794.1| HIV-1 isolate C1.50D clone 50 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 356

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619793.1| HIV-1 isolate C1.47D clone 47 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619792.1| HIV-1 isolate C1.46D clone 46 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619791.1| HIV-1 isolate C1.40D clone 40 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619790.1| HIV-1 isolate C1.4D clone 4 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619789.1| HIV-1 isolate C1.38D clone 38 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619788.1| HIV-1 isolate C1.32D clone 32 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619787.1| HIV-1 isolate C1.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619786.1| HIV-1 isolate C1.30D clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619785.1| HIV-1 isolate C1.28D clone 28 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619784.1| HIV-1 isolate C1.27bD clone 27 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619783.1| HIV-1 isolate C1.27aD clone 27 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619782.1| HIV-1 isolate C1.19D clone 19 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619781.1| HIV-1 isolate C1.14D clone 14 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619780.1| HIV-1 isolate C1.13D clone 13 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619779.1| HIV-1 isolate C1.11bD clone 11 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619778.1| HIV-1 isolate C1.11aD clone 11 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619777.1| HIV-1 isolate M3.R5.pi clone 3 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619774.1| HIV-1 isolate M3.43D clone 43 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619772.1| HIV-1 isolate M3.5D clone 5 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619771.1| HIV-1 isolate M3.3D clone 3 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619769.1| HIV-1 isolate M3.23D clone 23 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619768.1| HIV-1 isolate M3.30D clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619766.1| HIV-1 isolate M4.X4.ci clone 4 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619763.1| HIV-1 isolate M1.X4.pi clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619761.1| HIV-1 isolate M2.16D clone 16 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619760.1| HIV-1 isolate M2.43D clone 43 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619759.1| HIV-1 isolate M2.7D clone 7 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619758.1| HIV-1 isolate M2.50D clone 50 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619757.1| HIV-1 isolate M2.6D clone 6 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619756.1| HIV-1 isolate M2.47D clone 47 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619755.1| HIV-1 isolate M2.38D clone 38 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619754.1| HIV-1 isolate M2.37D clone 37 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619752.1| HIV-1 isolate M2.3D clone 3 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619749.1| HIV-1 isolate M2.21D clone 21 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619748.1| HIV-1 isolate M2.2D clone 2 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
to top
>gb|AY619746.1| HIV-1 isolate M1.48D clone 48 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619745.1| HIV-1 isolate M1.5D clone 5 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619740.1| HIV-1 isolate M1.32D clone 32 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619739.1| HIV-1 isolate M1.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619736.1| HIV-1 isolate M1.25D clone 25 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619735.1| HIV-1 isolate M1.21D clone 21 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619732.1| HIV-1 isolate M2.1D clone 1 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619731.1| HIV-1 isolate M1.2bD clone 2 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AY619730.1| HIV-1 isolate M1.2aD clone 2 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 259 aagttttattccatcctt 242
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>gb|AC133521.3| Mus musculus BAC clone RP23-189F22 from chromosome 12, complete sequence
          Length = 219682

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ttttattccatcctttac 34
              ||||||||||||||||||
Sbjct: 186009 ttttattccatcctttac 185992
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>gb|AC155924.2| Mus musculus BAC clone RP24-366C10 from 12, complete sequence
          Length = 142540

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    ttttattccatcctttac 34
             ||||||||||||||||||
Sbjct: 98362 ttttattccatcctttac 98379
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>emb|Z81069.1|CEF25H9 Caenorhabditis elegans Cosmid F25H9, complete sequence
          Length = 22239

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 14   aagttttattccatcctttaca 35
            ||||||||||||||| ||||||
Sbjct: 5687 aagttttattccatcttttaca 5666
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>emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 in linkage group 14,
              complete sequence
          Length = 153626

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 6      caatcgataagttttatt 23
              ||||||||||||||||||
Sbjct: 152005 caatcgataagttttatt 152022
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>gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, complete sequence
          Length = 172025

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     ttattccatcctttacat 36
              ||||||||||||||||||
Sbjct: 106659 ttattccatcctttacat 106642
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>gb|U56330.1|HIV1U56330 Human immunodeficiency virus type 1 clone 3B envelope glycoprotein,
           C2-V5 region (env) gene, partial cds
          Length = 618

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 217 aagttttattccatcctt 200
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>gb|U56312.1|HIV1U56312 Human immunodeficiency virus type 1 clone 3MP44 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 636

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 241 aagttttattccatcctt 224
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>gb|U56311.1|HIV1U56311 Human immunodeficiency virus type 1 clone 3MP43 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 241 aagttttattccatcctt 224
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>gb|U56310.1|HIV1U56310 Human immunodeficiency virus type 1 clone 3MP41 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 241 aagttttattccatcctt 224
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>gb|U56306.1|HIV1U56306 Human immunodeficiency virus type 1 clone 3MP45 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 241 aagttttattccatcctt 224
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>gb|U56305.1|HIV1U56305 Human immunodeficiency virus type 1, clone 3MP42 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 241 aagttttattccatcctt 224
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>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence
          Length = 230313

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     aagttttattccatcctt 31
              ||||||||||||||||||
Sbjct: 220793 aagttttattccatcctt 220810
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>gb|U56376.1|HIVU56376 Human immunodeficiency virus type 1 envelope glycoprotein gp120 V3
           region (env) gene, partial cds
          Length = 243

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 172 aagttttattccatcctt 155
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>gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome 17, complete
            sequence
          Length = 219714

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 17   ttttattccatcctttac 34
            ||||||||||||||||||
Sbjct: 4215 ttttattccatcctttac 4232
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>gb|L22947.1|HIV1UG266A Human immunodeficiency virus type 1 (UG266) proviral DNA encoding
            env, tat, vpu, rev, and nef genes
          Length = 3026

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagttttattccatcctt 31
            ||||||||||||||||||
Sbjct: 1186 aagttttattccatcctt 1169
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>gb|M98897.1|HIV3070E Human immunodeficiency virus type 1 (Uganda 3070e/1990), partial
           env cds, V3 loop
          Length = 198

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 170 aagttttattccatcctt 153
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>gb|M98895.1|HIV3070B Human immunodeficiency virus type 1 (Uganda 3070b/1990), partial
           env cds, V3 loop
          Length = 224

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  aagttttattccatcctt 31
           ||||||||||||||||||
Sbjct: 205 aagttttattccatcctt 188


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 331,202
Number of Sequences: 3902068
Number of extensions: 331202
Number of successful extensions: 84897
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84759
Number of HSP's gapped (non-prelim): 138
length of query: 46
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 26
effective length of database: 17,155,003,908
effective search space: 446030101608
effective search space used: 446030101608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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