>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372|
           kDa Golgi complex-associated protein) (GCP372)
          Length = 3259

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -2

Query: 357 IQHNRLKDYQDMVQERSQFKEIVDKYQQQIKALEERNYVLSLHLAQSD 214
           +   +L+++++ +  R+Q   +VD  QQ++ A E+RN +LS  L Q +
Sbjct: 256 VLQRKLEEHEESLVGRAQ---VVDLLQQELTAAEQRNQILSQQLQQME 300

>TBFA_EPTST (Q90501) Thread biopolymer filament alpha subunit|
          Length = 643

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -2

Query: 357 IQHNRLKDYQDMVQERSQFKEIVDKYQQQIKALEERNYVLSLHLA 223
           +QH R+++ QD+    ++F  +VD    Q++ LE+ N +L   ++
Sbjct: 185 VQHTRIREKQDLQTLNTKFANLVD----QVRTLEQHNAILKAQIS 225

>HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) (Homologous to|
           SIR2 protein 1)
          Length = 503

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 37  NIFNTNHTFKYPMIFFWHISSPNSRWLGQTLPSKFH 144
           N   TN  F  P++  + +  P+  + G+ LPS+FH
Sbjct: 360 NTVQTNINFNSPILKSYGVLKPDMTFFGEALPSRFH 395

>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in|
           astrocytoma protein) (RING finger protein 100)
          Length = 638

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 176 SFRGRRLLHPP*NLEGRVCPSHLELGEEMCQ 84
           + RG RL+ P   LE  +CP HL   E  C+
Sbjct: 164 ALRGHRLVPPLRRLEESLCPRHLRPXERYCR 194

>H6ST1_CHICK (Q76KB2) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)|
           (HS6ST-1) (cHS6ST-1)
          Length = 408

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 345 RLKDY-QDMVQERSQFKEIVDKYQQQIKALEER 250
           +L DY +D+ Q+R Q+K  +++ +Q+IK  EER
Sbjct: 343 QLYDYAKDLFQQRYQYKRQLERMEQRIKNREER 375

>CASP_YEAST (P34237) Protein CASP|
          Length = 679

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 318 QERSQFKEIVDKYQQQIKALEERNYVLSLHLAQSDHRSGISGHRN 184
           +ER++ K+ VD+ +QQI  L+E N  L   L + ++   +S H N
Sbjct: 405 EERNELKKSVDQLKQQIATLKEANEKLETDLEKVEN---VSPHFN 446

>ISPG_CHLPN (Q9Z8H0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 613

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 336 DYQDMV--QERSQFKEIVDKYQQQIKALEERNYVLSLHLAQSDHRSGISG 193
           +Y+D+V   + S  K +V  Y+Q  K L+ R ++  LHL  ++   G+ G
Sbjct: 201 NYRDVVFSMKSSNPKIMVTAYRQLAKDLDARGWLYPLHLGVTEAGMGVDG 250

>LEU3_PICST (O94114) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 373

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 295 DRRQVPAADQGARGEELCAVVASRAVGSPEWHIGAPQPRR 176
           D   VP  D      +L   V   AVG P+W  GA +P +
Sbjct: 55  DSTGVPLPDDSLAAAKLSDAVLLGAVGGPKWGTGAVRPEQ 94

>CD1B2_SHEEP (Q29422) T-cell surface glycoprotein CD1b-2 precursor (CD1b-2|
           antigen) (SCD1B-42) (Antigen IAH-CC14)
          Length = 333

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 283 VPAADQGARGEELCAVVASRAVGSP--EWHIGAPQPRRLLGV 164
           +PA D G RG++LCA+++     S   E  +    PR LLGV
Sbjct: 150 MPAPDSGNRGQKLCALLSQYQGTSDIIERLVSETCPRYLLGV 191

>SPT20_YEAST (P50875) Transcription factor SPT20|
          Length = 604

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -2

Query: 360 LIQHNRLKDYQDMVQ--ERSQFKE-IVDKYQQQIKALEERNYVLSLHLAQSDHR 208
           L++ N L  Y DM+   + ++F + I  +++ +I  L +RN  LS+ L   +HR
Sbjct: 284 LLKPNDLTTYYDMMSYADNARFSDSIYQQFESEILTLTKRNLSLSVPLNPYEHR 337

>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = -1

Query: 355  PAQQAQGLPGHGAGTVPVQGDRRQVPAA---DQGARGEELCAVVASRAVGSPEWHIGAPQ 185
            P +   GLP   AG  P     RQ PAA     G       +     + G+P  H+ A  
Sbjct: 1283 PVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKP 1342

Query: 184  PR 179
            PR
Sbjct: 1343 PR 1344

>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47|
          Length = 641

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 176 SFRGRRLLHPP*NLEGRVCPSHLELGEEMCQ 84
           + RG RL+ P   LE  +CP HL   E  C+
Sbjct: 168 ALRGHRLVPPLRRLEESLCPRHLRPLERYCR 198

>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = -1

Query: 355  PAQQAQGLPGHGAGTVPVQGDRRQVPAA---DQGARGEELCAVVASRAVGSPEWHIGAPQ 185
            PA+   GL    A   PV    RQ PAA      +   +  + V   + G+P  H+ A  
Sbjct: 1285 PAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPVKPPSPGTPALHVPAKP 1344

Query: 184  PRRLLGV 164
            PR    V
Sbjct: 1345 PRAAASV 1351

>WDR75_BRARE (Q7ZVR1) WD-repeat protein 75|
          Length = 832

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 266 LICCWYLSTISLNWDRSCTMS 328
           L+CCW L T +L W  S  +S
Sbjct: 562 LLCCWNLLTCALEWSTSVDVS 582

>LEU3_CANGA (O14429) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 365

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 295 DRRQVPAADQGARGEELCAVVASRAVGSPEWHIGAPQPRR 176
           D   VP  D+     +    V   AVG P+W  GA +P +
Sbjct: 53  DATGVPLPDEALEASKKADAVLLGAVGGPKWGTGAVRPEQ 92

>H6ST1_HUMAN (O60243) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)|
           (HS6ST-1)
          Length = 410

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -2

Query: 345 RLKDY-QDMVQERSQFKEIVDKYQQQIKALEER 250
           +L DY +D+ Q+R Q+K  +++ +Q++++ EER
Sbjct: 345 QLYDYAKDLFQQRYQYKRQLERREQRLRSREER 377

>TRI29_MOUSE (Q8R2Q0) Tripartite motif protein 29|
          Length = 587

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 176 SFRGRRLLHPP*NLEGRVCPSHLELGEEMCQ 84
           +FR  +LL P  + E R CP H +  E  CQ
Sbjct: 207 AFRDHQLLEPIRDFEARKCPLHGKTMELFCQ 237

>PDE6B_HUMAN (P35913) Rod cGMP-specific 3',5'-cyclic phosphodiesterase|
           beta-subunit precursor (EC 3.1.4.35) (GMP-PDE beta)
          Length = 854

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 351 HNRLKDYQDMVQE-RSQFKEIVDKYQQQIKALEER 250
           H  +    D +Q  R ++K + D+Y+ ++KALEE+
Sbjct: 790 HEEILPMFDRLQNNRKEWKALADEYEAKVKALEEK 824

>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -2

Query: 333  YQDMVQERSQFKEIVDKYQQQIKALEERNYVLSLHLAQSDH 211
            YQ+ ++E++  ++++   Q Q + LE R+Y LSL   Q  H
Sbjct: 1073 YQEHIEEQNLERQVL---QTQCRRLEARHYSLSLTAEQLSH 1110

>TRI29_HUMAN (Q14134) Tripartite motif protein 29 (Ataxia-telangiectasia group|
           D-associated protein)
          Length = 588

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 176 SFRGRRLLHPP*NLEGRVCPSHLELGEEMCQ 84
           +FR  +LL P  + E R CP H +  E  CQ
Sbjct: 207 AFRDHQLLEPIRDFEARKCPVHGKTMELFCQ 237

>LEU3_HANAN (Q9HDQ1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 295 DRRQVPAADQGARGEELCAVVASRAVGSPEWHIGAPQPRR 176
           D   VP  D+     +    V   AVG P+W  GA +P +
Sbjct: 51  DATGVPLPDEALEAAKKADAVLLGAVGGPKWGTGAVRPEQ 90

>MURG_VIBF1 (Q5E2Q0) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 354

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -1

Query: 268 QGARGEELCAVVASR-----AVGSPEWHIGAPQPRRLLGVGGY 155
           +G RG+ L  ++A+      A+   + HI A QP  +LG+GGY
Sbjct: 63  KGLRGQGLKKLIAAPFQILGAISQAKKHIKAWQPDVVLGMGGY 105

>CBID_SULTO (Q96ZL3) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 354

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 313 TVPVQ-GDRRQVPAADQGARGEELCAVVASRAVGSPE 206
           T+P   G R ++P  D   RGEE CA V   +  +P+
Sbjct: 41  TIPTPIGLRLEIPVDDYERRGEEYCATVTKFSGDNPD 77

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 351  HNRLKDYQDMVQERSQFKEIVDKYQ-QQIKALEERNYVLSLHLAQSDHRS 205
            H +    Q   Q + QF + + ++Q QQ   ++++N     HL+Q  H+S
Sbjct: 3891 HAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQHQS 3940

>LEU3_PICJA (P08791) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 363

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 295 DRRQVPAADQGARGEELCAVVASRAVGSPEWHIGAPQPRR 176
           D   VP  D      +    V   AVG P+W  GA +P +
Sbjct: 51  DATGVPLPDDALEASKKADAVLLGAVGGPKWGTGAVRPEQ 90

>MNN4_YEAST (P36044) Protein MNN4|
          Length = 1178

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 306 QFKEIVDKYQQQIKALEERNYVLS 235
           Q KE+ DK + ++  L+ RNY+L+
Sbjct: 269 QIKELYDKVRPEVYQLQARNYILT 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,661,122
Number of Sequences: 219361
Number of extensions: 1081825
Number of successful extensions: 3182
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)