ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z79603.1|CEM163 Caenorhabditis elegans Cosmid M163, complete... 44 0.31
2emb|Z81365.1|HS97K10 Human DNA sequence from clone RP1-97K10 on ... 44 0.31
3emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 ... 44 0.31
4gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, comple... 44 0.31
5gb|AY602222.1| Petromyzon marinus bone morphogenetic protein 24C... 42 1.2
6gb|AY602221.1| Petromyzon marinus bone morphogenetic protein 24B... 42 1.2
7emb|CR457459.9| Zebrafish DNA sequence from clone DKEY-25P11 in ... 42 1.2
8gb|AC122314.4| Mus musculus BAC clone RP23-301K1 from 12, comple... 42 1.2
9emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chro... 42 1.2
10emb|BX088647.3| Human DNA sequence from clone DASS-90B3 on chrom... 42 1.2
11emb|AL645935.7| Human DNA sequence from clone XXbac-67J3 on chro... 42 1.2
12emb|AL669914.2| Human DNA sequence from clone XXbac-250I8 on chr... 42 1.2
13emb|BX927229.6| Human DNA sequence from clone DAMA-377D17 on chr... 42 1.2
14emb|CR933629.1| Homo sapiens mRNA; cDNA DKFZp686B1842 (from clon... 42 1.2
15emb|CR759960.3| Human DNA sequence from clone DAAP-65D20 on chro... 42 1.2
16emb|CR759763.2| Human DNA sequence from clone DAMC-182C13 on chr... 42 1.2
17emb|BX530031.5| Zebrafish DNA sequence from clone DKEY-175M17 in... 42 1.2
18ref|XM_945157.1| PREDICTED: Homo sapiens chromosome 6 open readi... 42 1.2
19emb|CR388205.7| Human DNA sequence from clone DADB-60O11 on chro... 42 1.2
20dbj|AK040287.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 42 1.2
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22gb|AF499914.1| Ilyanassa obsoleta Dpp/BMP2&4 ligand-like protein... 42 1.2
23dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 1.2
24dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
25dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 42 1.2
26gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region 42 1.2
27dbj|AB115561.1| Cynops pyrrhogaster BMP mRNA for bone morphogene... 42 1.2
28gb|AC005404.1|AC005404 Homo sapiens clone UWGC:y2c096 from 6p21,... 42 1.2
29gb|AC004199.1|AC004199 Homo sapiens clone UWGC:y2c201 from 6p21,... 42 1.2
30gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, comple... 42 1.2
31dbj|AB071890.1| Lethenteron japonicum mRNA for LjBmp2/4a, partia... 42 1.2
32dbj|AB023056.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 1.2
33gb|U42580.4|PBU42580 Paramecium bursaria Chlorella virus 1, comp... 40 4.9
34gb|AY577916.1| Chlorella virus strain NC-1C protein kinase A248R... 40 4.9
35gb|AE008662.1| Rickettsia conorii str. Malish 7, section 94 of 1... 40 4.9
36gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, com... 40 4.9
37ref|XM_745485.1| Aspergillus fumigatus Af293 hypothetical protei... 40 4.9
38emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete ch... 40 4.9
39gb|AC109172.11| Mus musculus chromosome 14, clone RP23-279B8, co... 40 4.9
40emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in... 40 4.9
41emb|AL589963.7| Human DNA sequence from clone RP11-133I21 on chr... 40 4.9
42gb|AC099535.2| Homo sapiens chromosome 3 clone RP11-2G22, comple... 40 4.9
43emb|X94224.1|MSGYRBA M.smegmatis gyrB and gyrA genes 40 4.9
44emb|X84077.1|MSGYRAB M.smegmatis gyrB and gyrA genes 40 4.9
45emb|BX510991.10| Zebrafish DNA sequence from clone RP71-44C4 in ... 40 4.9
46gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, co... 40 4.9
47emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 i... 40 4.9
48gb|AC112179.2| Homo sapiens chromosome 5 clone RP11-116A1, compl... 40 4.9
49gb|AC101937.8| Mus musculus chromosome 1, clone RP24-87K13, comp... 40 4.9
50emb|AL954835.4| Mouse DNA sequence from clone RP23-416L9 on chro... 40 4.9
51gb|AC153939.3| Mus musculus 10 BAC RP24-173I5 (Roswell Park Canc... 40 4.9
52gb|AC137675.2| Homo sapiens chromosome 3 clone RP11-358O21, comp... 40 4.9
53gb|AC154205.1| Mus musculus BAC clone RP24-88I1 from chromosome ... 40 4.9
54emb|BX649348.8| Mouse DNA sequence from clone RP23-359M23 on chr... 40 4.9
55emb|BX294384.19| Mouse DNA sequence from clone RP24-230A23 on ch... 40 4.9
56emb|BX005096.8| Zebrafish DNA sequence from clone CH211-132F13 i... 40 4.9
57gb|AC162879.7| Mus musculus chromosome 1, clone RP24-169N15, com... 40 4.9
58emb|AL808016.23| Mouse DNA sequence from clone RP23-443A2 on chr... 40 4.9
59gb|U14660.1|U14660 Chlorella virus PBCV-1 serine/threonine prote... 40 4.9
60gb|AC152980.2| Mus musculus 10 BAC RP23-462F3 (Roswell Park Canc... 40 4.9 
>emb|Z79603.1|CEM163 Caenorhabditis elegans Cosmid M163, complete sequence
          Length = 43245

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 35   taaacatttttaatacaaatca 56
            ||||||||||||||||||||||
Sbjct: 9887 taaacatttttaatacaaatca 9908
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>emb|Z81365.1|HS97K10 Human DNA sequence from clone RP1-97K10 on chromosome X Contains the 5'
              end of the HS6ST2 gene for heparan sulfate
              6-O-sulfotransferase 2, the USP26 gene for ubiquitin
              specific protease 26, the 5' end of a novel gene and a CpG
              island, complete sequence
          Length = 156197

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 25     aaatacatactaaacatttttaatacaaat 54
              ||||||||||||||||||||| | ||||||
Sbjct: 148965 aaatacatactaaacattttttagacaaat 148936
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>emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 in linkage group 17,
              complete sequence
          Length = 162970

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 118    gggcaaactctcccttccaagt 139
              ||||||||||||||||||||||
Sbjct: 106807 gggcaaactctcccttccaagt 106786
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>gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, complete sequence
          Length = 214267

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 134    ccaagtttcacggaggatgcag 155
              ||||||||||||||||||||||
Sbjct: 188631 ccaagtttcacggaggatgcag 188610
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>gb|AY602222.1| Petromyzon marinus bone morphogenetic protein 24C (BMP24C) mRNA,
            complete cds
          Length = 2358

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 319  caccatgtcctggtagtccttgagc 343
            ||||||||||||||||| |||||||
Sbjct: 1720 caccatgtcctggtagttcttgagc 1696
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>gb|AY602221.1| Petromyzon marinus bone morphogenetic protein 24B (BMP24B) mRNA,
            complete cds
          Length = 2037

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 319  caccatgtcctggtagtccttgagc 343
            ||||||||||||||||| |||||||
Sbjct: 1395 caccatgtcctggtagttcttgagc 1371
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>emb|CR457459.9| Zebrafish DNA sequence from clone DKEY-25P11 in linkage group 12,
              complete sequence
          Length = 206901

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     ttcaaatacatactaaacatt 42
              |||||||||||||||||||||
Sbjct: 148364 ttcaaatacatactaaacatt 148384
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>gb|AC122314.4| Mus musculus BAC clone RP23-301K1 from 12, complete sequence
          Length = 205285

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     tacaaatcacacatttaaata 68
              |||||||||||||||||||||
Sbjct: 190299 tacaaatcacacatttaaata 190319
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>emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chromosome 6 Contains HLA-H
              for major histocompatibility complex, class I, H
              (pseudogene), HLA-16 pseudogene, HCP5P6 for HLA complex P5
              pseudogene 6, HCG4P6 for HLA complex group 4 pseudogene 6,
              HLA-K for major histocompatibility complex, class I, K,
              HLA-21 pseudogene, HLA-A for major histocompatibility
              complex, class I, A, HCP5P3 for HLA complex P5 pseudogene
              3, HLA-80 pseudogene,  MICD for MHC class I
              polypeptide-related sequence D, HCG9 for HLA complex group
              9,  HCP5P2 for HLA complex P5 pseudogene 2, HLA-J for major
              histocompatibility complex, class I, J (pseudogene), HCG8
              for HLA complex group 8, 5' end of C6orf12 for chromosome 6
              open reading frame 12 and five CpG islands, complete
              sequence
          Length = 159427

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 24     caaatacatactaaacatttttaat 48
              ||||||| |||||||||||||||||
Sbjct: 151255 caaatacctactaaacatttttaat 151279
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>emb|BX088647.3| Human DNA sequence from clone DASS-90B3 on chromosome 6, complete
             sequence
          Length = 100183

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 11625 caaatacctactaaacatttttaat 11649
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>emb|AL645935.7| Human DNA sequence from clone XXbac-67J3 on chromosome 6 contains four
              MHC class 1 pseudogenes, a P5-1 pseudogene, a putative
              novel transcript similar to HCGIV, a novel MHC class 1
              protein, the HLA-A gene for major histocompatibility
              complex, class I, A, the gene for PERB11 family member in
              MHC class 1 region (HCGIX, HCGIX4), the HLA-J gene for
              major histocompatibility complex, class I, J (pseudogene),
              a novel transcript similar to HCGVIII, the 3' end of the
              gene for HTEX4.3 and four CpG islands, complete sequence
          Length = 129611

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 24     caaatacatactaaacatttttaat 48
              ||||||| |||||||||||||||||
Sbjct: 125940 caaatacctactaaacatttttaat 125964
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>emb|AL669914.2| Human DNA sequence from clone XXbac-250I8 on chromosome 6 contains a
             major histocompatibility complex, class I, J pseudogene,
             the gene for HCGVIII protein, the genes for HTEX4, 4.3 and
             6, a eukaryotic translation termination factor 1 (ETF1)
             pseudogene, the ZNRD1 gene for zinc ribbon domain
             containing, 1 , the PPP1R11 gene for protein phosphatase
             1, regulatory (inhibitor) subunit 11, the HZFW1 gene for
             HZFW1 protein, the TRIM31 gene for tripartite motif
             containing 31, the TRIM40 gene for tripartite
             morif-containing 40, the TRIM10 gene for  tripartite motif
             containing 10, the 5' end of the TRIM15 gene for
             tripartite motif-containing 15 and five CpG islands,
             complete sequence
          Length = 159178

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 13733 caaatacctactaaacatttttaat 13757
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>emb|BX927229.6| Human DNA sequence from clone DAMA-377D17 on chromosome 6, complete
             sequence
          Length = 112627

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 50376 caaatacctactaaacatttttaat 50400
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>emb|CR933629.1| Homo sapiens mRNA; cDNA DKFZp686B1842 (from clone DKFZp686B1842)
          Length = 9807

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 24   caaatacatactaaacatttttaat 48
            ||||||| |||||||||||||||||
Sbjct: 2770 caaatacctactaaacatttttaat 2746
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>emb|CR759960.3| Human DNA sequence from clone DAAP-65D20 on chromosome 6, complete
             sequence
          Length = 97107

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 15899 caaatacctactaaacatttttaat 15923
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>emb|CR759763.2| Human DNA sequence from clone DAMC-182C13 on chromosome 6, complete
             sequence
          Length = 110503

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 38467 caaatacctactaaacatttttaat 38491
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>emb|BX530031.5| Zebrafish DNA sequence from clone DKEY-175M17 in linkage group 21,
             complete sequence
          Length = 160736

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    ttcaaatacatactaaacatt 42
             |||||||||||||||||||||
Sbjct: 47454 ttcaaatacatactaaacatt 47434
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>ref|XM_945157.1| PREDICTED: Homo sapiens chromosome 6 open reading frame 12,
            transcript variant 2 (C6orf12), mRNA
          Length = 11666

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 24   caaatacatactaaacatttttaat 48
            ||||||| |||||||||||||||||
Sbjct: 3383 caaatacctactaaacatttttaat 3359
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>emb|CR388205.7| Human DNA sequence from clone DADB-60O11 on chromosome 6, complete
             sequence
          Length = 101470

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 45689 caaatacctactaaacatttttaat 45713
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>dbj|AK040287.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430083F19 product:unclassifiable, full
           insert sequence
          Length = 1710

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  tacaaatcacacatttaaata 68
           |||||||||||||||||||||
Sbjct: 660 tacaaatcacacatttaaata 640
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 129      cccttccaagtttcacggagg 149
                |||||||||||||||||||||
Sbjct: 23404342 cccttccaagtttcacggagg 23404362
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>gb|AF499914.1| Ilyanassa obsoleta Dpp/BMP2&4 ligand-like protein (Dpp) mRNA,
           partial cds
          Length = 1555

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 319 caccatgtcctggtagtccttgagc 343
           ||||||||||||||||| |||||||
Sbjct: 884 caccatgtcctggtagttcttgagc 860
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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 24      caaatacatactaaacatttttaat 48
               ||||||| |||||||||||||||||
Sbjct: 1923437 caaatacctactaaacatttttaat 1923413
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>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   cccttccaagtttcacggagg 149
             |||||||||||||||||||||
Sbjct: 86179 cccttccaagtttcacggagg 86199
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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 24      caaatacatactaaacatttttaat 48
               ||||||| |||||||||||||||||
Sbjct: 1466214 caaatacttactaaacatttttaat 1466190
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>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region
          Length = 319486

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 23123 caaatacctactaaacatttttaat 23099
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>dbj|AB115561.1| Cynops pyrrhogaster BMP mRNA for bone morphogenetic protein,
           partial cds
          Length = 269

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 319 caccatgtcctggtagtccttgagc 343
           ||||||||||||||||| |||||||
Sbjct: 251 caccatgtcctggtagttcttgagc 227
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>gb|AC005404.1|AC005404 Homo sapiens clone UWGC:y2c096 from 6p21, complete sequence
          Length = 45298

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 24   caaatacatactaaacatttttaat 48
            ||||||| |||||||||||||||||
Sbjct: 3123 caaatacctactaaacatttttaat 3099
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>gb|AC004199.1|AC004199 Homo sapiens clone UWGC:y2c201 from 6p21, complete sequence
          Length = 40622

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 40375 caaatacctactaaacatttttaat 40351
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>gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, complete sequence
          Length = 246636

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    tacaaatcacacatttaaata 68
             |||||||||||||||||||||
Sbjct: 39615 tacaaatcacacatttaaata 39635
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>dbj|AB071890.1| Lethenteron japonicum mRNA for LjBmp2/4a, partial cds
          Length = 2048

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 319 caccatgtcctggtagtccttgagc 343
           ||||||||||||||||| |||||||
Sbjct: 811 caccatgtcctggtagttcttgagc 787
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>dbj|AB023056.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:544A6, complete sequence
          Length = 162227

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 24    caaatacatactaaacatttttaat 48
             ||||||| |||||||||||||||||
Sbjct: 51850 caaatacctactaaacatttttaat 51826
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>gb|U42580.4|PBU42580 Paramecium bursaria Chlorella virus 1, complete genome
          Length = 330743

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     atacatactaaacattttta 46
              ||||||||||||||||||||
Sbjct: 125683 atacatactaaacattttta 125664
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>gb|AY577916.1| Chlorella virus strain NC-1C protein kinase A248R (a248r) gene,
           partial cds
          Length = 226

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 27  atacatactaaacattttta 46
           ||||||||||||||||||||
Sbjct: 218 atacatactaaacattttta 199
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>gb|AE008662.1| Rickettsia conorii str. Malish 7, section 94 of 114 of the complete
            genome
          Length = 10671

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 30   catactaaacatttttaatacaaa 53
            |||||||||||||||||| |||||
Sbjct: 5598 catactaaacatttttaaaacaaa 5621
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>gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, complete sequence
          Length = 262581

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     taatacaaatcacacattta 64
              ||||||||||||||||||||
Sbjct: 221264 taatacaaatcacacattta 221283
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>ref|XM_745485.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g06850) partial
            mRNA
          Length = 1629

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  ctgctgctggtacttgtcga 290
            ||||||||||||||||||||
Sbjct: 1100 ctgctgctggtacttgtcga 1081
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>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12
          Length = 329100

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 285    tgtcgacgatctccttgaactggg 308
              ||||||||||| ||||||||||||
Sbjct: 258419 tgtcgacgatcgccttgaactggg 258442
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>gb|AC109172.11| Mus musculus chromosome 14, clone RP23-279B8, complete sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     taaacatttttaatacaaat 54
              ||||||||||||||||||||
Sbjct: 171136 taaacatttttaatacaaat 171155
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>emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in linkage group 3, complete
              sequence
          Length = 160005

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 37     aacatttttaatacaaatcacaca 60
              |||||||||||| |||||||||||
Sbjct: 105215 aacatttttaattcaaatcacaca 105192
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>emb|AL589963.7| Human DNA sequence from clone RP11-133I21 on chromosome 6 Contains part
             of the gene for a novel protein containing CH domains
             (contains KIAA1756, FLJ30878 and the likely ortholog of
             rat CPG2) and part of a novel gene, complete sequence
          Length = 86565

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    tttaatacaaatcacacatttaaa 66
             ||||| ||||||||||||||||||
Sbjct: 69601 tttaaaacaaatcacacatttaaa 69624
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>gb|AC099535.2| Homo sapiens chromosome 3 clone RP11-2G22, complete sequence
          Length = 181720

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    tgcaacgacagcacatagttcctc 253
              ||||| ||||||||||||||||||
Sbjct: 118824 tgcaaagacagcacatagttcctc 118801
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>emb|X94224.1|MSGYRBA M.smegmatis gyrB and gyrA genes
          Length = 6000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  cttgtcgacgatctccttga 302
            ||||||||||||||||||||
Sbjct: 4803 cttgtcgacgatctccttga 4784
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>emb|X84077.1|MSGYRAB M.smegmatis gyrB and gyrA genes
          Length = 5119

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  cttgtcgacgatctccttga 302
            ||||||||||||||||||||
Sbjct: 3644 cttgtcgacgatctccttga 3625
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>emb|BX510991.10| Zebrafish DNA sequence from clone RP71-44C4 in linkage group 17,
             complete sequence
          Length = 116313

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    aatacatactaaacatttttaata 49
             |||||||| |||||||||||||||
Sbjct: 47375 aatacatattaaacatttttaata 47352
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>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence
          Length = 199527

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   taatacaaatcacacattta 64
            ||||||||||||||||||||
Sbjct: 6987 taatacaaatcacacattta 7006
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>emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 in linkage group 13,
             complete sequence
          Length = 174828

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    acaaatcacacatttaaata 68
             ||||||||||||||||||||
Sbjct: 29904 acaaatcacacatttaaata 29885
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>gb|AC112179.2| Homo sapiens chromosome 5 clone RP11-116A1, complete sequence
          Length = 156979

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    catttttaatacaaatcaca 58
             ||||||||||||||||||||
Sbjct: 86445 catttttaatacaaatcaca 86426
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>gb|AC101937.8| Mus musculus chromosome 1, clone RP24-87K13, complete sequence
          Length = 195175

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ttaatacaaatcacacattt 63
             ||||||||||||||||||||
Sbjct: 89649 ttaatacaaatcacacattt 89668
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>emb|AL954835.4| Mouse DNA sequence from clone RP23-416L9 on chromosome 2, complete
              sequence
          Length = 141405

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     tactaaacatttttaataca 51
              ||||||||||||||||||||
Sbjct: 109439 tactaaacatttttaataca 109458
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>gb|AC153939.3| Mus musculus 10 BAC RP24-173I5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 145018

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 31     atactaaacatttttaatacaaat 54
              |||||| |||||||||||||||||
Sbjct: 108702 atactatacatttttaatacaaat 108725
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>gb|AC137675.2| Homo sapiens chromosome 3 clone RP11-358O21, complete sequence
          Length = 163004

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   tgcaacgacagcacatagttcctc 253
             ||||| ||||||||||||||||||
Sbjct: 38333 tgcaaagacagcacatagttcctc 38310
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>gb|AC154205.1| Mus musculus BAC clone RP24-88I1 from chromosome 14, complete
            sequence
          Length = 219623

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   taaacatttttaatacaaat 54
            ||||||||||||||||||||
Sbjct: 5399 taaacatttttaatacaaat 5418
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>emb|BX649348.8| Mouse DNA sequence from clone RP23-359M23 on chromosome 2, complete
             sequence
          Length = 162565

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tactaaacatttttaataca 51
             ||||||||||||||||||||
Sbjct: 58475 tactaaacatttttaataca 58494
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>emb|BX294384.19| Mouse DNA sequence from clone RP24-230A23 on chromosome X, complete
              sequence
          Length = 133152

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     acatttcctcacctaattct 108
              ||||||||||||||||||||
Sbjct: 110826 acatttcctcacctaattct 110807
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>emb|BX005096.8| Zebrafish DNA sequence from clone CH211-132F13 in linkage group 20,
              complete sequence
          Length = 162987

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     aatacatactaaacattttt 45
              ||||||||||||||||||||
Sbjct: 154002 aatacatactaaacattttt 154021
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>gb|AC162879.7| Mus musculus chromosome 1, clone RP24-169N15, complete sequence
          Length = 142655

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ttaatacaaatcacacattt 63
             ||||||||||||||||||||
Sbjct: 18797 ttaatacaaatcacacattt 18816
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>emb|AL808016.23| Mouse DNA sequence from clone RP23-443A2 on chromosome X, complete
             sequence
          Length = 103220

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 42    ttttaatacaaatcacacatttaaatat 69
             ||||||||||||| ||| ||||||||||
Sbjct: 95867 ttttaatacaaattacaaatttaaatat 95840
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>gb|U14660.1|U14660 Chlorella virus PBCV-1 serine/threonine protein kinase gene, complete
            cds
          Length = 2056

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   atacatactaaacattttta 46
            ||||||||||||||||||||
Sbjct: 1953 atacatactaaacattttta 1934
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>gb|AC152980.2| Mus musculus 10 BAC RP23-462F3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 165602

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     atactaaacatttttaatacaaat 54
              |||||| |||||||||||||||||
Sbjct: 147325 atactatacatttttaatacaaat 147302


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,089,961
Number of Sequences: 3902068
Number of extensions: 3089961
Number of successful extensions: 75684
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75562
Number of HSP's gapped (non-prelim): 122
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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