ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25d09 |
|---|---|
| Clone Library Name | barley_pub |
>SYF2_NEUCR (Q7RZK5) Pre-mRNA-splicing factor syf-2| Length = 339 Score = 32.0 bits (71), Expect = 0.64 Identities = 23/103 (22%), Positives = 43/103 (41%) Frame = +2 Query: 113 PYVRRSPFPELVSEFTDGDRAPGTSTSDRSNHEIFYTIDKVGSRG**KPPRNWSATARSA 292 P +R PE +E T + ST++ +N + + ++ + A Sbjct: 3 PEKKRKTEPEDKAEVTQQENDVAESTTEPNNQTVTDSKEE--------------PSVTEA 48 Query: 293 PAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADA 421 A S+ +PP LS ++ PD AA + ++P ++ A A Sbjct: 49 ALATTSSSSPPVLSASETAQPDTAATSQSSSTPPTSTSAAESA 91
>NEUM_BOVIN (P06836) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 239 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADD 427 P + +A + A + ST N P+ D ++ +ADV + T A+ TA A+D Sbjct: 131 PSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATAPAAED 187
>NEUM_MOUSE (P06837) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 227 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADD 427 P + +A + AA+ +T N P+ D ++ +ADV + T+A+ T A+D Sbjct: 121 PSEEKAGSAETESAAKATTDNSPSSKAEDGPAKEEPKQADVPAAVTDAAATTPAAED 177
>NEUM_RAT (P07936) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Protein F1) Length = 226 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADD 427 P + +A + AA+ +T N P+ D ++ +ADV + T+A+ T A+D Sbjct: 121 PSEEKAGSAETESAAKATTDNSPSSKAEDGPAKEEPKQADVPAAVTDAAATTPAAED 177
>NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Fragment) Length = 241 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 287 SAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADAD 424 S P A ST N P+L + D ++ +ADV + T A+ T A D Sbjct: 146 STPKA--STDNSPSLKADEAQDKEEPKQADVPAADTTATTTPAAED 189
>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein| 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2) Length = 2446 Score = 28.9 bits (63), Expect = 5.4 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Frame = +2 Query: 101 SRLRPYVRRSPFPELV-----SEFTDGDRAPGTSTSDRS-NHEIFYTIDKVGSRG**KPP 262 S ++ + R P+LV SE DG ++ +S S S + Y SR P Sbjct: 1481 SDIKKDLSRPQKPQLVRQGCASEPKDGLQSGSSSFSSLSPSSSQDYPSVSPSSREPFLPS 1540 Query: 263 RNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAAD 418 + + +R+ QKS+ + ++D+LD D+ A +D+ SP ++S A D Sbjct: 1541 KEMLSGSRAPLPGQKSSGPSESKESSDELDIDETA-SDMSMSPQSSSLPAGD 1591
>RDRP_LYCVA (P14240) RNA-directed RNA polymerase (EC 2.7.7.48)| Length = 2210 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 30 CKHLKKTWTWKHADRGDQDSRTTFPVCDRTYEDHLFQSLYLNSLMEIERLGQARLIDQI 206 C HL +T + + G F + +ED++ L L +E+E LG R++D I Sbjct: 2009 CLHLLRTDSVFKVNDG------VFDIRSEEFEDYMEDPLILGDSLELELLGSKRILDGI 2061
>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein homolog)| Length = 1320 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +2 Query: 254 KPPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDA-AEADVETSPTNAS 403 K PR+ ++ ++ ++ K P +A +LDPD + E VE +PT +S Sbjct: 985 KAPRSSEDSSDTSSEDEEDAKRPQMPKSAHRLDPDPSQKETVVEETPTESS 1035
>BUB1_SCHPO (O94751) Checkpoint serine/threonine-protein kinase bub1 (EC| 2.7.11.1) Length = 1044 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/66 (27%), Positives = 32/66 (48%) Frame = +2 Query: 8 TKFLPKEL*TLEKNVDMEACRSR*SGFKNHISRLRPYVRRSPFPELVSEFTDGDRAPGTS 187 +K P ++ + KN+D S+ +KN + L R PF EL+ + A GT+ Sbjct: 457 SKNYPSKIYSPNKNLDFSHTASKAETYKNS-NELENVKREQPFSELLPSTLQEETATGTT 515 Query: 188 TSDRSN 205 ++ +N Sbjct: 516 STTFAN 521
>2A5B_RABIT (Q28647) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit beta isoform (PP2A, B subunit, B' beta isoform) (PP2A, B subunit, B56 beta isoform) (PP2A, B subunit, PR61 beta isoform) (PP2A, B subunit, R5 beta isoform) (PP2A, B sub Length = 500 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -2 Query: 199 SIRRACPRRSISISEFRYK 143 S+RRA PRRS S S+FRY+ Sbjct: 35 SLRRARPRRSHSSSQFRYQ 53
>2A5B_HUMAN (Q15173) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit beta isoform (PP2A, B subunit, B' beta isoform) (PP2A, B subunit, B56 beta isoform) (PP2A, B subunit, PR61 beta isoform) (PP2A, B subunit, R5 beta isoform) Length = 497 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -2 Query: 199 SIRRACPRRSISISEFRYK 143 S+RRA PRRS S S+FRY+ Sbjct: 35 SLRRARPRRSHSSSQFRYQ 53
>NEUM_PANTR (Q5IS67) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) Length = 238 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +2 Query: 272 SATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADD 427 + +A + A + ST N P+ D ++ +ADV + T A+ T A+D Sbjct: 135 AGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAED 186
>NEUM_HUMAN (P17677) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (PP46) (Neural phosphoprotein B-50) Length = 238 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +2 Query: 272 SATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADD 427 + +A + A + ST N P+ D ++ +ADV + T A+ T A+D Sbjct: 135 AGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAED 186
>HSF1_ARATH (P41151) Heat shock factor protein 1 (HSF 1) (Heat shock| transcription factor 1) (HSTF 1) Length = 495 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAAD 418 PPRN A ++ PP LS + D A +A V SPTN S+ D Sbjct: 34 PPRN----PHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWD 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,913,177 Number of Sequences: 219361 Number of extensions: 855128 Number of successful extensions: 2594 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2590 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
