Clone Information

BLAST Search Result

Clone Name	rbart25d09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_189671.1\| Oryza sativa (japonica cultivar-group), predic...	86	1e-13
2	gb\|AY459339.1\| Oryza sativa (japonica cultivar-group) clone CL00...	86	1e-13
3	gb\|AF474135.1\| Oryza sativa typical P-type R2R3 Myb protein gene...	86	1e-13
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	86	1e-13
5	dbj\|AP002746.2\| Oryza sativa (japonica cultivar-group) genomic D...	86	1e-13
6	dbj\|AP002743.1\| Oryza sativa (japonica cultivar-group) genomic D...	86	1e-13
7	dbj\|AK109125.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	86	1e-13
8	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	44	0.37
9	ref\|NM_188545.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.5
10	emb\|BX936293.11\| Platypus DNA sequence from clone XX-516O5, comp...	42	1.5
11	emb\|X82071.1\|PAHEMA Pseudomonas aeruginosa hemA gene, ORF2, ORF3...	42	1.5
12	gb\|AE004880.1\| Pseudomonas aeruginosa PAO1, section 441 of 529 o...	42	1.5
13	dbj\|AP002902.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
14	dbj\|AP002900.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
15	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	42	1.5
16	dbj\|AK100398.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
17	ref\|XM_483427.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.7
18	ref\|NM_191746.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.7
19	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	40	5.7
20	gb\|AC132485.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
21	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	5.7
22	emb\|AJ874678.2\| Ovis aries mRNA for MHC class I antigen (ovar-MH...	40	5.7
23	emb\|BX005428.7\| Human DNA sequence from clone DASS-38I7 on chrom...	40	5.7
24	emb\|AL844851.4\| Human DNA sequence from clone DAQB-335A13 on chr...	40	5.7
25	emb\|AL669813.6\| Human DNA sequence from clone XXbac-231I11 on ch...	40	5.7
26	emb\|AL645939.6\| Human DNA sequence from clone XXbac-170G13 on ch...	40	5.7
27	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	5.7
28	emb\|AL022723.4\|HS377H14 Human DNA sequence from clone RP3-377H14...	40	5.7
29	emb\|BX927148.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	5.7
30	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	5.7
31	emb\|AL939122.1\|SCO939122 Streptomyces coelicolor A3(2) complete ...	40	5.7
32	emb\|AL939113.1\|SCO939113 Streptomyces coelicolor A3(2) complete ...	40	5.7
33	emb\|CR925767.6\| Human DNA sequence from clone DAAP-84C21 on chro...	40	5.7
34	emb\|CR788234.4\| Human DNA sequence from clone DAMC-149H2 on chro...	40	5.7
35	emb\|CR759769.4\| Human DNA sequence from clone DADB-15K14 on chro...	40	5.7
36	gb\|AC087550.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
37	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	5.7
38	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
39	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
40	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
41	emb\|BX927182.6\| Human DNA sequence from clone DAMA-80H6 on chrom...	40	5.7
42	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	5.7
43	dbj\|AP003408.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
44	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.7
45	gb\|AF546139.1\|AF546140S2 Amycolatopsis orientalis PksE (pksE) an...	40	5.7
46	dbj\|BA000025.2\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	5.7
47	dbj\|AP003888.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
48	gb\|AF055066.1\|AF055066 Homo sapiens MHC class 1 region	40	5.7
49	dbj\|AK100965.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
50	dbj\|AK069486.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
51	dbj\|AK066778.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
52	gb\|DQ333337.1\| Oryza sativa (japonica cultivar-group) UDP-glucur...	40	5.7
53	gb\|AC004192.1\|AC004192 Homo sapiens clone UWGC:y23c124 from 6p21...	40	5.7
54	gb\|AF025656.1\|AF025656 Streptomyces albus G HrcA (hrcA) and DnaJ...	40	5.7
55	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	5.7
56	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
57	gb\|U26001.1\|OAU26001 Ovis aries MHC class I antigen gene, alpha ...	40	5.7
58	dbj\|AB011967.1\| Oryza sativa OsPK4 gene, complete cds	40	5.7
59	dbj\|AB023058.1\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	5.7

>ref|NM_189671.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                          
Query: 336 ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 628 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 582



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 226 tgacaaggtcgggtcgagagggtagtagaagccgccg 262
           ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 780 tgacaagctcggatcgagagggtagtagtagccgccg 744

to top

>gb|AY459339.1| Oryza sativa (japonica cultivar-group) clone CL005170.5 R2R3-MYB gene
            region
          Length = 9432

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                           
Query: 336  ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
            ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1436 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 1482



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 226  tgacaaggtcgggtcgagagggtagtagaagccgccg 262
            ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 1284 tgacaagctcggatcgagagggtagtagtagccgccg 1320

to top

>gb|AF474135.1| Oryza sativa typical P-type R2R3 Myb protein gene, complete cds
          Length = 1507

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 336 ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 250



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 226 tgacaaggtcgggtcgagagggtagtagaagccgccg 262
           ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 52  tgacaagctcggatcgagagggtagtagtagccgccg 88

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                              
Query: 336     ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
               ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4917290 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 4917336



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 226     tgacaaggtcgggtcgagagggtagtagaagccgccg 262
               ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 4917138 tgacaagctcggatcgagagggtagtagtagccgccg 4917174



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 355     cgacgacgcggcggaggccgacgtcgaga 383
               ||||||||||| ||||||||||| |||||
Sbjct: 6888773 cgacgacgcggtggaggccgacgacgaga 6888745



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 356      gacgacgcggcggaggccgacgtc 379
                ||||||||| ||||||||||||||
Sbjct: 29733995 gacgacgcgccggaggccgacgtc 29733972

to top

>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0671B11
          Length = 168372

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                            
Query: 336   ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
             ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 17743 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 17789



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 226   tgacaaggtcgggtcgagagggtagtagaagccgccg 262
             ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 17591 tgacaagctcggatcgagagggtagtagtagccgccg 17627

to top

>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                             
Query: 336    ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
              ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 161939 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 161985



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 226    tgacaaggtcgggtcgagagggtagtagaagccgccg 262
              ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 161787 tgacaagctcggatcgagagggtagtagtagccgccg 161823

to top

>dbj|AK109125.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D04, full
           insert sequence
          Length = 1089

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                          
Query: 336 ccgccgaccagttggaccccgacgacgcggcggaggccgacgtcgag 382
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 759 ccgccgaccagttggaccccgacgacgcggcggaggcggacgtcgag 713



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 226 tgacaaggtcgggtcgagagggtagtagaagccgccg 262
           ||||||| || | ||||||||||||||| ||||||||
Sbjct: 911 tgacaagctcagatcgagagggtagtagtagccgccg 875

to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 271    gtcggcgacggcgaggtcggcc 292
              ||||||||||||||||||||||
Sbjct: 430815 gtcggcgacggcgaggtcggcc 430836



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     gcgacggcgaggtcggccccggcc 298
               ||||||||||||||| ||||||||
Sbjct: 2873544 gcgacggcgaggtcgcccccggcc 2873521

to top

>ref|NM_188545.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1590

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 355 cgacgacgcggcggaggccgacgtcgaga 383
           ||||||||||| ||||||||||| |||||
Sbjct: 315 cgacgacgcggtggaggccgacgacgaga 287

to top

>emb|BX936293.11| Platypus DNA sequence from clone XX-516O5, complete sequence
          Length = 178175

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    aggtgatcaggattcaagaaccaca 98
             |||||||||||||||||||| ||||
Sbjct: 61922 aggtgatcaggattcaagaaacaca 61946

to top

>emb|X82071.1|PAHEMA Pseudomonas aeruginosa hemA gene, ORF2, ORF3, prf1 gene and hemM
            gene, strain PAO1
          Length = 4781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 256  gccgccgaggaactggtcggc 276
            |||||||||||||||||||||
Sbjct: 4159 gccgccgaggaactggtcggc 4179

to top

>gb|AE004880.1| Pseudomonas aeruginosa PAO1, section 441 of 529 of the complete
            genome
          Length = 13518

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 256  gccgccgaggaactggtcggc 276
            |||||||||||||||||||||
Sbjct: 7983 gccgccgaggaactggtcggc 7963

to top

>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492F05
          Length = 159242

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 355   cgacgacgcggcggaggccgacgtcgaga 383
             ||||||||||| ||||||||||| |||||
Sbjct: 56497 cgacgacgcggtggaggccgacgacgaga 56469

to top

>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E07
          Length = 159440

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 355   cgacgacgcggcggaggccgacgtcgaga 383
             ||||||||||| ||||||||||| |||||
Sbjct: 10591 cgacgacgcggtggaggccgacgacgaga 10563

to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 281     gcgaggtcggccccggccgcgcaga 305
               ||||||||||| |||||||||||||
Sbjct: 1052654 gcgaggtcggcgccggccgcgcaga 1052630



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 265     gaactggtcggcgacggcga 284
               ||||||||||||||||||||
Sbjct: 5363193 gaactggtcggcgacggcga 5363212

to top

>dbj|AK100398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M16, full
           insert sequence
          Length = 3420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 355 cgacgacgcggcggaggccgacgtcgaga 383
           ||||||||||| ||||||||||| |||||
Sbjct: 330 cgacgacgcggtggaggccgacgacgaga 302

to top

>ref|XM_483427.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1956

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 355  cgacgacgcggcggaggccgacgtcgag 382
            |||||| ||||||||||||| |||||||
Sbjct: 1417 cgacgaagcggcggaggccggcgtcgag 1390

to top

>ref|NM_191746.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1095

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 356 gacgacgcggcggaggccgacgtc 379
           ||||||||| ||||||||||||||
Sbjct: 648 gacgacgcgccggaggccgacgtc 625

to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 264     ggaactggtcggcgacggcg 283
               ||||||||||||||||||||
Sbjct: 1989541 ggaactggtcggcgacggcg 1989560

to top

>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
             complete sequence
          Length = 142068

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ggaactggtcggcgacggcg 283
             ||||||||||||||||||||
Sbjct: 24282 ggaactggtcggcgacggcg 24263

to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     ggaactggtcggcgacggcg 283
               ||||||||||||||||||||
Sbjct: 1442702 ggaactggtcggcgacggcg 1442683

to top

>emb|AJ874678.2| Ovis aries mRNA for MHC class I antigen (ovar-MHCI-C11 gene)
          Length = 1123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 tcctggaccgcggcggatgc 420
           ||||||||||||||||||||
Sbjct: 466 tcctggaccgcggcggatgc 485

to top

>emb|BX005428.7| Human DNA sequence from clone DASS-38I7 on chromosome 6, complete
             sequence
          Length = 130934

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 94172 tttctgcctaaagaactgtaaaca 94195

to top

>emb|AL844851.4| Human DNA sequence from clone DAQB-335A13 on chromosome 6 Contains the
             HCP5P15 pseudogene for HLA complex P5 pseudogene 15, the
             HLA-F gene for major histocompatibility complex, class I,
             F, the RPL23AP1 pseudogene for ribosomal protein L23a 1,
             the DAQB-335A13.8 locus for novel transcripts sharing
             homology with MICE, the MICE pseudogene for MHC class I
             polypeptide-related sequence E, the HCG9P5 pseudogene for
             HLA complex group 9 pseudogene 5, the IFITM4P pseudogene
             for interferon induced transmembrane protein 4, the
             HCP5P14 pseudogene for HLA complex P5 pseudogene 14, the
             HCG4 gene for HLA complex group 4, the HCP5P13 pseudogene
             for HLA complex P5 pseudogene 13, the DAQB-335A13.14 locus
             for novel transcripts that share homology with HLA-75, the
             pseudogene HLA-75, the HLA-90 pseudogene, the RPL7AP7
             pseudogene for ribosomal protein L7a pseudogene 7, the
             MICG pseudogene for MHC class I polypeptide-related
             sequence G, and 4 CpG islands, complete sequence
          Length = 119030

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 84446 tttctgcctaaagaactgtaaaca 84469

to top

>emb|AL669813.6| Human DNA sequence from clone XXbac-231I11 on chromosome 6 contains the
              3' end of the gene for myelin oligodendrocyte glycoprotein
              (MOG), a novel KRAB box-containing C2H2 type zinc finger
              protein (fragment), a P5-1 pseudogene, the HLA-F gene for
              major histocompatibility complex, class I, F (HLAF,
              HLA-5.4, HLA-CDA12), a 60S ribosomal protein L23A (RPL23A)
              pseudogene, a MHC class 1 polypeptide-related sequence B
              (MICB) pseudogene, a HCGIX pseudogene, a interferon-induced
              transmembrane protein 3 (IFITM3, 1-8U) pseudogene and four
              CpG islands, complete sequence
          Length = 115133

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     tttctgcccaaagaactgtaaaca 37
              |||||||| |||||||||||||||
Sbjct: 107193 tttctgcctaaagaactgtaaaca 107216

to top

>emb|AL645939.6| Human DNA sequence from clone XXbac-170G13 on chromosome 6 contains two
             P5-1 pseudogenes, the HLA-F gene for major
             histocompatibility complex, class I, F, a ribosomal
             protein L23A (RPL23A) pseudogene, a MHC class 1
             polypeptide-related sequence B (MICB) pseudogene, a HCGIX
             pseudogene, a interferon-induced transmembrane protein 3
             (IFITM3) pseudogene, a HLA (MHC class 1) pseudogene, a
             putative novel MHC class 1 (HLA) protein, a 60S ribosomal
             protein L7A (RPL7A) pseudogene and five CpG islands,
             complete sequence
          Length = 123768

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 76320 tttctgcctaaagaactgtaaaca 76343

to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    gaagccgccgaggaactggt 272
              ||||||||||||||||||||
Sbjct: 898234 gaagccgccgaggaactggt 898253

to top

>emb|AL022723.4|HS377H14 Human DNA sequence from clone RP3-377H14 on chromosome 6p21.32-22.1
             Contains the HLA-G gene for major histocompatibility
             complex class I G (HLA 6.0) an MHC class I pseudogene, an
             RPL7A (60S Ribosomal Protein L7A) pseudogene, a gene for a
             novel MHC class 1 protein, an interferon-inducible protein
             1-8U pseudogene, an RPL23A (60S Ribosomal Protein L23A)
             pseudogene, an HCGIX pseudogene, an MICB or PERB11.1
             pseudogene,the HLA-F gene for major histocompatibility
             complex class I F (CDA12), and four P5-1 pseudogenes.
             Contains EST, STSs, GSS and six CpG islands, complete
             sequence
          Length = 148834

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 61364 tttctgcctaaagaactgtaaaca 61341

to top

>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 1/10
          Length = 348071

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    ggtcggcgacggcgaggtcg 289
              ||||||||||||||||||||
Sbjct: 109653 ggtcggcgacggcgaggtcg 109634

to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     ggaactggtcggcgacggcg 283
               ||||||||||||||||||||
Sbjct: 1314676 ggaactggtcggcgacggcg 1314657

to top

>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    cctcgccgacgaacgcgtcc 403
              ||||||||||||||||||||
Sbjct: 183247 cctcgccgacgaacgcgtcc 183266

to top

>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    cggcgaggtcggccccggcc 298
              ||||||||||||||||||||
Sbjct: 241288 cggcgaggtcggccccggcc 241269



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   ggcgacggcgaggtcggccccggc 297
             ||||| ||||||||||||||||||
Sbjct: 30360 ggcgagggcgaggtcggccccggc 30337

to top

>emb|CR925767.6| Human DNA sequence from clone DAAP-84C21 on chromosome 6, complete
             sequence
          Length = 112545

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 21217 tttctgcctaaagaactgtaaaca 21240

to top

>emb|CR788234.4| Human DNA sequence from clone DAMC-149H2 on chromosome 6, complete
             sequence
          Length = 86854

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 38148 tttctgcctaaagaactgtaaaca 38171

to top

>emb|CR759769.4| Human DNA sequence from clone DADB-15K14 on chromosome 6, complete
             sequence
          Length = 88412

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 30581 tttctgcctaaagaactgtaaaca 30604

to top

>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gaactggtcggcgacggcga 284
             ||||||||||||||||||||
Sbjct: 85927 gaactggtcggcgacggcga 85908

to top

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     gaccgcggcggatgccgacg 425
               ||||||||||||||||||||
Sbjct: 4841314 gaccgcggcggatgccgacg 4841333

to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      gaactggtcggcgacggcga 284
                ||||||||||||||||||||
Sbjct: 15232228 gaactggtcggcgacggcga 15232209

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 355      cgacgacgcggcggaggccgacgtcgag 382
                |||||| ||||||||||||| |||||||
Sbjct: 26158365 cgacgaagcggcggaggccggcgtcgag 26158392

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 264      ggaactggtcggcgacggcg 283
                ||||||||||||||||||||
Sbjct: 25289678 ggaactggtcggcgacggcg 25289659

to top

>emb|BX927182.6| Human DNA sequence from clone DAMA-80H6 on chromosome 6, complete
             sequence
          Length = 51649

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 36143 tttctgcctaaagaactgtaaaca 36166

to top

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    ggtcggcgacggcgaggtcg 289
              ||||||||||||||||||||
Sbjct: 109652 ggtcggcgacggcgaggtcg 109633

to top

>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131B07
          Length = 109135

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 356   gacgacgcggcggaggccgacgtc 379
             ||||||||| ||||||||||||||
Sbjct: 63726 gacgacgcgccggaggccgacgtc 63703

to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 274     ggcgacggcgaggtcggccccggc 297
               ||||| ||||||||||||||||||
Sbjct: 6741223 ggcgagggcgaggtcggccccggc 6741246

to top

>gb|AF546139.1|AF546140S2 Amycolatopsis orientalis PksE (pksE) and TebC (tebC) genes, complete
            cds
          Length = 6262

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  cgaggtcggccccggccgcg 301
            ||||||||||||||||||||
Sbjct: 2490 cgaggtcggccccggccgcg 2509

to top

>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 14      tttctgcccaaagaactgtaaaca 37
               |||||||| |||||||||||||||
Sbjct: 2160987 tttctgcctaaagaactgtaaaca 2160964

to top

>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 355    cgacgacgcggcggaggccgacgtcgag 382
              |||||| ||||||||||||| |||||||
Sbjct: 102296 cgacgaagcggcggaggccggcgtcgag 102323

to top

>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region
          Length = 319486

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 14     tttctgcccaaagaactgtaaaca 37
              |||||||| |||||||||||||||
Sbjct: 255500 tttctgcctaaagaactgtaaaca 255477

to top

>dbj|AK100965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142D13, full
            insert sequence
          Length = 1956

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 355  cgacgacgcggcggaggccgacgtcgag 382
            |||||| ||||||||||||| |||||||
Sbjct: 1417 cgacgaagcggcggaggccggcgtcgag 1390

to top

>dbj|AK069486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021H04, full
           insert sequence
          Length = 1972

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ggaactggtcggcgacggcg 283
           ||||||||||||||||||||
Sbjct: 643 ggaactggtcggcgacggcg 624

to top

>dbj|AK066778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079M07, full
           insert sequence
          Length = 2177

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ggaactggtcggcgacggcg 283
           ||||||||||||||||||||
Sbjct: 640 ggaactggtcggcgacggcg 621

to top

>gb|DQ333337.1| Oryza sativa (japonica cultivar-group) UDP-glucuronic acid
            4-epimerase isoform 3 mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 355  cgacgacgcggcggaggccgacgtcgag 382
            |||||| ||||||||||||| |||||||
Sbjct: 1351 cgacgaagcggcggaggccggcgtcgag 1324

to top

>gb|AC004192.1|AC004192 Homo sapiens clone UWGC:y23c124 from 6p21, complete sequence
          Length = 42817

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 28861 tttctgcctaaagaactgtaaaca 28838

to top

>gb|AF025656.1|AF025656 Streptomyces albus G HrcA (hrcA) and DnaJ (dnaJ2) genes, complete cds
          Length = 2521

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 274  ggcgacggcgaggtcggccccggc 297
            ||||| ||||||||||||||||||
Sbjct: 1886 ggcgagggcgaggtcggccccggc 1909

to top

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     cgtcgagacctcgccgacga 395
               ||||||||||||||||||||
Sbjct: 2413403 cgtcgagacctcgccgacga 2413384



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    gaactggtcggcgacggcga 284
              ||||||||||||||||||||
Sbjct: 642704 gaactggtcggcgacggcga 642685

to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      gaactggtcggcgacggcga 284
                ||||||||||||||||||||
Sbjct: 15240469 gaactggtcggcgacggcga 15240450

to top

>gb|U26001.1|OAU26001 Ovis aries MHC class I antigen gene, alpha 2 domain, Ovar A4
           variant, partial cds
          Length = 194

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 tcctggaccgcggcggatgc 420
           ||||||||||||||||||||
Sbjct: 84  tcctggaccgcggcggatgc 103

to top

>dbj|AB011967.1| Oryza sativa OsPK4 gene, complete cds
          Length = 5793

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ggaactggtcggcgacggcg 283
            ||||||||||||||||||||
Sbjct: 4202 ggaactggtcggcgacggcg 4183

to top

>dbj|AB023058.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:950A3, complete sequence
          Length = 114450

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tttctgcccaaagaactgtaaaca 37
             |||||||| |||||||||||||||
Sbjct: 45620 tttctgcctaaagaactgtaaaca 45597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,532,732
Number of Sequences: 3902068
Number of extensions: 2532732
Number of successful extensions: 58009
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55814
Number of HSP's gapped (non-prelim): 2195
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result