ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25d07 |
|---|---|
| Clone Library Name | barley_pub |
>DICER_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-) (CARPEL FACTORY| protein) (SHORT INTEGUMENTS 1 protein) (SUSPENSOR1 protein) Length = 1909 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/70 (41%), Positives = 36/70 (51%) Frame = -2 Query: 477 ETLGRHPVSELLEFGQKTGRTVDIFKDGWVKDTKVDVFVDGVLVASATYAQKKEIASNRA 298 ETL HPV EL E Q+ ++ V+VF+DGV V A QKK +A A Sbjct: 1728 ETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKK-MAQKLA 1786 Query: 297 AKAALDKLKE 268 A+ AL LKE Sbjct: 1787 ARNALAALKE 1796
>FLJB_SALTY (P52616) Phase 2 flagellin| Length = 505 Score = 33.5 bits (75), Expect = 0.30 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLIC_SALCH (P06176) Flagellin (Phase 1-C flagellin)| Length = 500 Score = 33.5 bits (75), Expect = 0.30 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLIC_SALRU (P06175) Flagellin (Phase 1-R flagellin)| Length = 492 Score = 33.5 bits (75), Expect = 0.30 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLIC_SALTY (P06179) Flagellin (Phase 1-I flagellin)| Length = 494 Score = 33.5 bits (75), Expect = 0.30 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLIC_SALPA (P06178) Flagellin (Phase 1-A flagellin)| Length = 494 Score = 33.5 bits (75), Expect = 0.30 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLJB_SALAE (P52615) Phase 2 flagellin| Length = 500 Score = 33.1 bits (74), Expect = 0.40 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAHTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLIC_SALMU (P06177) Flagellin (Phase 1-D flagellin)| Length = 504 Score = 32.7 bits (73), Expect = 0.52 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ +A T EI +N R + A+ + QSD+ S E + L+E+DR SG Sbjct: 69 DGISIAQTTEGALNEINNNLQRVRELAVQSANGTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 Query: 189 LQL**NAETLSAQHMVLPV 133 Q N + AQ L + Sbjct: 129 TQF--NGVKVLAQDNTLTI 145
>FLIC_ECOLI (P04949) Flagellin| Length = 497 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ VA T EI +N R + + + +SD+ S E LDE+DR SG Sbjct: 69 DGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRLDEIDRVSGQ 128 Query: 189 LQ 184 Q Sbjct: 129 TQ 130
>ACEA_PENMA (Q96WZ5) Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (Isocitratase)| (ICL) Length = 540 Score = 29.3 bits (64), Expect = 5.7 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Frame = -2 Query: 459 PVSELL---EFGQKTGRTVDIFKDGWVKDTKVDVFVDGVL--VASATYAQKKEIASNRAA 295 P+++L+ E K+G + +D W+ + F D V+ + ++A KKE+ NR Sbjct: 276 PLNDLMVAAEQSGKSGEQLQAIEDSWIAQAGIKKFDDAVIDTINQGSFANKKELI-NRYL 334 Query: 294 KAALDK 277 AA K Sbjct: 335 TAAKGK 340
>RNC_CAMJR (Q5HSF8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 224 Score = 28.9 bits (63), Expect = 7.5 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -2 Query: 417 TVDIFKDGWVKDTKVDVFVDGVLVASATYAQKKEIASNRAAKAALDKL 274 TV F +K ++ + +DG +A A KKE A AAK AL+KL Sbjct: 175 TVRAFGPDHLKQFEIALMLDGKELARAIAGSKKE-AQQMAAKIALEKL 221
>RNC_CAMJE (Q9PM40) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 224 Score = 28.9 bits (63), Expect = 7.5 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -2 Query: 417 TVDIFKDGWVKDTKVDVFVDGVLVASATYAQKKEIASNRAAKAALDKL 274 TV F +K ++ + +DG +A A KKE A AAK AL+KL Sbjct: 175 TVRAFGPDHLKQFEIALMLDGKELARAIAGSKKE-AQQMAAKIALEKL 221
>RNC_BACFR (Q64ZV9) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 290 Score = 28.9 bits (63), Expect = 7.5 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%) Frame = -2 Query: 480 LETLGRHPV---SELLEFGQKTGRTV--DIFKDGWVKDT----KVDVFVDGVLVASATYA 328 L+ L R V S+L+E+ QK V ++ + K+ + +V ++G+L S T Sbjct: 164 LDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGILGGSGTGY 223 Query: 327 QKKEIASNRAAKAALDKLK-EMSGQSDVQSAPGEAPEPLDELDRSGALQL 181 KKE N AA+ L K+K + + VQ A + P ++ + L Sbjct: 224 SKKESQQN-AAQMTLKKIKGDPEFMASVQEAKTQNNVPAEDTTPESEMSL 272
>ACEA_LEPMC (Q86ZF1) Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (Isocitratase)| (ICL) Length = 537 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Frame = -2 Query: 459 PVSELL---EFGQKTGRTVDIFKDGWVKDTKVDVFVDGVL--VASATYAQKKEI 313 P+SEL+ E K+G + +D WVK+ + +F + V+ + + + K+E+ Sbjct: 274 PLSELMYAAEQSGKSGSELQAIEDAWVKEANLKLFHEAVVDTINAGVHVNKQEL 327
>Y514_SYNY3 (Q55470) Hypothetical protein sll0514| Length = 554 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 356 PSTNTSTFVSLTHPSLKISTVRPVFWPN 439 P T+ +SL+ PS+ I+T P FWP+ Sbjct: 295 PLTDDQGELSLSAPSIVITTTWPAFWPS 322
>PDPK1_DROME (Q9W0V1) 3-phosphoinositide-dependent protein kinase 1 (EC| 2.7.11.1) (dPDK-1) (Serine/threonine-protein kinase 61C) (dSTPK61) Length = 836 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/39 (46%), Positives = 20/39 (51%) Frame = +3 Query: 192 LQNGPIRPTAQELLLGLIEHQIAPTSPLVCQGLPSRRGS 308 LQNGPI P A LG I +Q + GLP RGS Sbjct: 482 LQNGPITPAADLWALGCIVYQ-------MIAGLPPFRGS 513
>JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)| Length = 628 Score = 28.9 bits (63), Expect = 7.5 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 26/113 (23%) Frame = -2 Query: 468 GRHPVSELLEFGQKTGRTVDIFKDGWVKDTKVDVFVDGVLVASATYAQKKEIASNRAAKA 289 G++ + L+ G+ + G VK+ KVD V+G A + Q++EIA+ RAA A Sbjct: 330 GKYKRNRLVHGGRVRSLLPLALRRGKVKE-KVDRAVEGARRAVSAARQRQEIAAARAADA 388 Query: 288 A--------------------------LDKLKEMSGQSDVQSAPGEAPEPLDE 208 L + E G+ Q + G EPLDE Sbjct: 389 LLKAVAASSVAEKAVEAARMAKLIAQDLQPMLEAPGRRPRQDSEGSDTEPLDE 441
>FLIC_SHIFL (Q08860) Flagellin| Length = 550 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Frame = -2 Query: 360 DGVLVASATYAQKKEIASN--RAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDR-SGA 190 DG+ VA T EI +N R + + + SD+ S E LDE+DR SG Sbjct: 70 DGISVAQTTEGALSEINNNLQRIRELTVQASTGTNSDSDLDSIQDEIKSRLDEIDRVSGQ 129 Query: 189 LQ 184 Q Sbjct: 130 TQ 131
>DCN1_USTMA (Q4PF67) Defective in cullin neddylation protein 1| Length = 319 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/56 (25%), Positives = 25/56 (44%) Frame = -2 Query: 348 VASATYAQKKEIASNRAAKAALDKLKEMSGQSDVQSAPGEAPEPLDELDRSGALQL 181 ++S+T +K E A D+ ++ SD + PE D + GAL++ Sbjct: 55 ISSSTLDRKSEREVKERLNALFDRFRDAGADSDEEDDEASQPEDRDLISIGGALKM 110
>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 28.5 bits (62), Expect = 9.7 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 4/96 (4%) Frame = +3 Query: 111 GKVQFNYKQAKPYVALTMSQHFTRAVKLQNGPIRPTAQELLLGLIEHQIAPTSPLVCQGL 290 G V Y +P V T T+A LQ+G + P L + SP++ QGL Sbjct: 2307 GMVPSQYNPLRPGV--TPGTLSTQAAGLQHGMMGPIHSSLSTNTL-------SPIIYQGL 2357 Query: 291 PSRRGSKLSPSFEHKSRLQPAH----RQQIHQPSYP 386 P+ R P ++QP + Q + PS P Sbjct: 2358 PNTR-LATQPHLVQTQQVQPQNLQIQPQNLQPPSQP 2392
>RNC_BACFN (Q5LIS2) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 290 Score = 28.5 bits (62), Expect = 9.7 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 10/101 (9%) Frame = -2 Query: 480 LETLGRHPV---SELLEFGQKTGRTV--DIFKDGWVKDT----KVDVFVDGVLVASATYA 328 L+ L R V S+L+E+ QK V ++ + K+ + +V ++G+L S T Sbjct: 164 LDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGILGGSGTGY 223 Query: 327 QKKEIASNRAAKAALDKLK-EMSGQSDVQSAPGEAPEPLDE 208 KKE N AA+ L K+K + + VQ A + P ++ Sbjct: 224 SKKESQQN-AAQMTLKKIKGDPEFMASVQEAKTQNNVPAED 263
>RECF_XANC5 (Q3BZS9) DNA replication and repair protein recF| Length = 368 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 156 LTMSQHFTRAVKLQNGPIRPTAQELLLGLIEHQIAPTSPLVCQGLPSRR 302 LTM + + RA+K +N ++ AQ +L +H++A + + L SRR Sbjct: 152 LTMWRRYARALKQRNALLKQGAQPRMLDAWDHELAESG----ESLTSRR 196
>JPH4_MOUSE (Q80WT0) Junctophilin-4 (Junctophilin-like 1 protein)| Length = 628 Score = 28.5 bits (62), Expect = 9.7 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 26/113 (23%) Frame = -2 Query: 468 GRHPVSELLEFGQKTGRTVDIFKDGWVKDTKVDVFVDGVLVASATYAQKKEIASNRAAKA 289 G++ + L+ G+ + G VK+ KVD V+G A + Q++EIA+ RAA A Sbjct: 330 GKYKRNRLVHGGRVRSLLPLALRRGKVKE-KVDRAVEGARRAVSAARQRQEIAAARAADA 388 Query: 288 A--------------------------LDKLKEMSGQSDVQSAPGEAPEPLDE 208 L + E G+ Q + G EPLDE Sbjct: 389 LLKAVAASSVAEKAVEAARMAKLIAQDLQPMLEAPGRRPRQDSGGSDTEPLDE 441 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,556,034 Number of Sequences: 219361 Number of extensions: 1187686 Number of successful extensions: 3740 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3738 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
