>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 311      gctatctccttcttttgagcataagtcgcgcttgcaaccagcacaccgtcaacaaataca 370
                |||||||||||||||||||||||||| || ||| |||||| | |||||||||  ||||| 
Sbjct: 14616178 gctatctccttcttttgagcataagttgcccttccaaccatctcaccgtcaatcaatact 14616119

                     
Query: 371      tcaac 375
                |||||
Sbjct: 14616118 tcaac 14616114



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 418      tcggccagtcttttggccaaactctaatagctcgcttacgggatgcctccctaatgtctc 477
                ||||| ||| ||||||| |||||| || ||||||||||| |||||| | |||||||||||
Sbjct: 14616071 tcggcgagttttttggcaaaactcaaaaagctcgcttacaggatgcttgcctaatgtctc 14616012

                   
Query: 478      aag 480
                |||
Sbjct: 14616011 aag 14616009

>dbj|AP005914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0027A16
          Length = 129953

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 311   gctatctccttcttttgagcataagtcgcgcttgcaaccagcacaccgtcaacaaataca 370
             |||||||||||||||||||||||||| || ||| |||||| | |||||||||  ||||| 
Sbjct: 70439 gctatctccttcttttgagcataagttgcccttccaaccatctcaccgtcaatcaatact 70380

                  
Query: 371   tcaac 375
             |||||
Sbjct: 70379 tcaac 70375



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                         
Query: 418   tcggccagtcttttggccaaactctaatagctcgcttacgggatgcctccctaatgtctc 477
             ||||| ||| ||||||| |||||| || ||||||||||| |||||| | |||||||||||
Sbjct: 70332 tcggcgagttttttggcaaaactcaaaaagctcgcttacaggatgcttgcctaatgtctc 70273

                
Query: 478   aag 480
             |||
Sbjct: 70272 aag 70270

>dbj|AP004804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0680B05
          Length = 138741

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                        
Query: 311  gctatctccttcttttgagcataagtcgcgcttgcaaccagcacaccgtcaacaaataca 370
            |||||||||||||||||||||||||| || ||| |||||| | |||||||||  ||||| 
Sbjct: 2045 gctatctccttcttttgagcataagttgcccttccaaccatctcaccgtcaatcaatact 1986

                 
Query: 371  tcaac 375
            |||||
Sbjct: 1985 tcaac 1981



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 418  tcggccagtcttttggccaaactctaatagctcgcttacgggatgcctccctaatgtctc 477
            ||||| ||| ||||||| |||||| || ||||||||||| |||||| | |||||||||||
Sbjct: 1938 tcggcgagttttttggcaaaactcaaaaagctcgcttacaggatgcttgcctaatgtctc 1879

               
Query: 478  aag 480
            |||
Sbjct: 1878 aag 1876

>dbj|AK107404.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-E01, full
           insert sequence
          Length = 1415

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 311 gctatctccttcttttgagcataagtcgcgcttgcaaccagcacaccgtcaacaaataca 370
           |||||||||||||||||||||||||| || ||| |||||| | |||||||||  ||||| 
Sbjct: 852 gctatctccttcttttgagcataagttgcccttccaaccatctcaccgtcaatcaatact 793

                
Query: 371 tcaac 375
           |||||
Sbjct: 792 tcaac 788



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 418 tcggccagtcttttggccaaactctaatagctcgcttacgggatgcctccctaatgtctc 477
           ||||| ||| ||||||| |||||| || ||||||||||| |||||| | |||||||||||
Sbjct: 745 tcggcgagttttttggcaaaactcaaaaagctcgcttacaggatgcttgcctaatgtctc 686

              
Query: 478 aag 480
           |||
Sbjct: 685 aag 683

>gb|AE001397.1| Plasmodium falciparum 3D7 chromosome 2 section 34 of 73 of the
            complete sequence
          Length = 14529

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 44   aataatcatatgatttgcatataaatattt 73
            ||||| ||||||||||| ||||||||||||
Sbjct: 983  aataagcatatgatttggatataaatattt 1012

>gb|AF003385.2| Caenorhabditis elegans cosmid R08F11, complete sequence
          Length = 32838

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 45   ataatcatatgatttgcatataaata 70
            |||||||| |||||||||||||||||
Sbjct: 7768 ataatcatttgatttgcatataaata 7793

>gb|AC023714.5| Drosophila melanogaster X BAC RP98-19D19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160100

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 376   cttcgtatccttaacccaccca 397
             ||||||||||||||||||||||
Sbjct: 28387 cttcgtatccttaacccaccca 28366

>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
              sequence
          Length = 326403

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 376    cttcgtatccttaacccaccca 397
              ||||||||||||||||||||||
Sbjct: 149866 cttcgtatccttaacccaccca 149887

>ref|XM_878357.1| PREDICTED: Bos taurus hypothetical LOC533952, transcript variant 4
           (LOC533952), mRNA
          Length = 1590

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 222 caggagcttctcctggggctg 242
           |||||||||||||||||||||
Sbjct: 293 caggagcttctcctggggctg 273

>ref|XM_613528.2| PREDICTED: Bos taurus hypothetical LOC533952, transcript variant 1
            (LOC533952), mRNA
          Length = 2371

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  caggagcttctcctggggctg 242
            |||||||||||||||||||||
Sbjct: 1593 caggagcttctcctggggctg 1573

>emb|CT026474.3| Macaca mulatta chromosome 9 BAC CH250-270M9, complete sequence
          Length = 168693

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    atttgcatataaatatttaca 76
             |||||||||||||||||||||
Sbjct: 15799 atttgcatataaatatttaca 15819

>gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, complete sequence
          Length = 216757

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    atttgcatataaatatttaca 76
             |||||||||||||||||||||
Sbjct: 94600 atttgcatataaatatttaca 94580

>emb|AL646098.9| Mouse DNA sequence from clone RP23-107I24 on chromosome 11, complete
              sequence
          Length = 200222

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 53     atgatttgcatataaatatttacag 77
              |||||| ||||||||||||||||||
Sbjct: 161525 atgattggcatataaatatttacag 161549

>gb|AC150440.3| Medicago truncatula chromosome 7 BAC clone mth2-189e2, complete
             sequence
          Length = 113968

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 44    aataatcatatgatttgcatataaa 68
             |||||||||||||||| ||||||||
Sbjct: 88451 aataatcatatgatttccatataaa 88475



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 44    aataatcatatgatttgcatataaa 68
             |||||||||||||||| ||||||||
Sbjct: 82059 aataatcatatgatttccatataaa 82035

>gb|AC158124.6| Mus musculus chromosome 7, clone RP24-71O4, complete sequence
          Length = 156165

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    atttgcatataaatatttaca 76
             |||||||||||||||||||||
Sbjct: 18474 atttgcatataaatatttaca 18494

>gb|AC114733.4| Homo sapiens BAC clone RP13-1014F16 from 4, complete sequence
          Length = 51083

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    aataatcatatgatttgcata 64
             |||||||||||||||||||||
Sbjct: 30275 aataatcatatgatttgcata 30255

>emb|CT027657.3| Macaca mulatta chromosome 9 BAC CH250-255J18, complete sequence
          Length = 172942

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     atttgcatataaatatttaca 76
              |||||||||||||||||||||
Sbjct: 124481 atttgcatataaatatttaca 124501

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     catgtaatggaaaagttcaa 122
               ||||||||||||||||||||
Sbjct: 2007129 catgtaatggaaaagttcaa 2007148

>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    cagcttaacaacatgcatgt 107
             ||||||||||||||||||||
Sbjct: 33294 cagcttaacaacatgcatgt 33275



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    cagcttaacaacatgcatgt 107
             ||||||||||||||||||||
Sbjct: 21501 cagcttaacaacatgcatgt 21482

>ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@) on chromosome 7
          Length = 140728

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tctccttcttttgagcataa 334
              ||||||||||||||||||||
Sbjct: 119045 tctccttcttttgagcataa 119026



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tctccttcttttgagcataa 334
              ||||||||||||||||||||
Sbjct: 102946 tctccttcttttgagcataa 102927

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 88       cagcttaacaacatgcatgt 107
                ||||||||||||||||||||
Sbjct: 35635516 cagcttaacaacatgcatgt 35635497



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 88       cagcttaacaacatgcatgt 107
                ||||||||||||||||||||
Sbjct: 35623723 cagcttaacaacatgcatgt 35623704

>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence
          Length = 171816

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   tctccttcttttgagcataa 334
             ||||||||||||||||||||
Sbjct: 91901 tctccttcttttgagcataa 91920



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   tctccttcttttgagcataa 334
             ||||||||||||||||||||
Sbjct: 75802 tctccttcttttgagcataa 75821

>emb|BX323986.11| Zebrafish DNA sequence from clone CH211-248A14 in linkage group 17,
             complete sequence
          Length = 121610

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   ttaacccacccatctttaaa 405
             ||||||||||||||||||||
Sbjct: 39126 ttaacccacccatctttaaa 39145

>emb|BX005459.6| Zebrafish DNA sequence from clone CH211-214N22 in linkage group 6,
             complete sequence
          Length = 211210

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   actagagctgtaaagctcca 196
             ||||||||||||||||||||
Sbjct: 85176 actagagctgtaaagctcca 85157

>gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus, complete sequence
          Length = 140691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tctccttcttttgagcataa 334
              ||||||||||||||||||||
Sbjct: 119012 tctccttcttttgagcataa 118993



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tctccttcttttgagcataa 334
              ||||||||||||||||||||
Sbjct: 102912 tctccttcttttgagcataa 102893

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 88       cagcttaacaacatgcatgt 107
                ||||||||||||||||||||
Sbjct: 35725589 cagcttaacaacatgcatgt 35725570



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 88       cagcttaacaacatgcatgt 107
                ||||||||||||||||||||
Sbjct: 35713796 cagcttaacaacatgcatgt 35713777

>emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in linkage group 17,
              complete sequence
          Length = 242955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    ttaacccacccatctttaaa 405
              ||||||||||||||||||||
Sbjct: 126549 ttaacccacccatctttaaa 126530

>gb|AY112061.1| Zea mays CL13380_1 mRNA sequence
          Length = 682

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 291 ccttcgcggcgcggttcgaagctatctccttcttttgagcataa 334
           ||||||| || ||||||  |||||||||||||||| || |||||
Sbjct: 348 ccttcgcagcacggttctgagctatctccttctttggaccataa 391

>emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, complete sequence
          Length = 138158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    cttaacaacatgcatgtaat 110
             ||||||||||||||||||||
Sbjct: 98569 cttaacaacatgcatgtaat 98588

>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
              sequence
          Length = 242530

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 129    tacaaacaggcaaaaccatatgtt 152
              ||||||||||||||||||| ||||
Sbjct: 159468 tacaaacaggcaaaaccatttgtt 159491

>emb|AL603714.11| Mouse DNA sequence from clone RP23-95H5 on chromosome 15, complete
              sequence
          Length = 140219

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     taacaacatgcatgtaatgg 112
              ||||||||||||||||||||
Sbjct: 119238 taacaacatgcatgtaatgg 119257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,215,052
Number of Sequences: 3902068
Number of extensions: 4215052
Number of successful extensions: 88196
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88040
Number of HSP's gapped (non-prelim): 155
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)