ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 335 3e-89
2gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 135 5e-29
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 115 5e-23
4gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 113 2e-22
5gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 105 5e-20
6emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 98 1e-17
7emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.009
8gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydratio... 42 0.57
9gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 42 0.57
10emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 42 0.57
11emb|AL832661.1|HSM803971 Homo sapiens genomic DNA; cDNA DKFZp313... 42 0.57
12dbj|AK001423.1| Homo sapiens cDNA FLJ10561 fis, clone NT2RP2002672 42 0.57
13gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, comp... 42 0.57
14gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, com... 42 0.57
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.57
16emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 42 0.57
17dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.57
18emb|BX648964.1|HSM809115 Homo sapiens mRNA; cDNA DKFZp686J0156 (... 42 0.57
19dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.57
20gb|AC005384.2|AC005384 b326h7, complete sequence 42 0.57
21gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 2.3
22ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 2.3
23gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 2.3
24emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 40 2.3
25emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 2.3
26emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chr... 40 2.3
27emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 2.3
28ref|NG_004451.1| Rattus norvegicus RT1 class 1, M1, pseudogene 1... 40 2.3
29gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 40 2.3
30dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 2.3
31dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 2.3
32gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 2.3
33dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 2.3
34dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 2.3
35gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O1... 38 8.9
36gb|AF165926.2| Homo sapiens chromosome 5p13 BAC clone djn085o06 ... 38 8.9
37gb|AC005371.1| Homo sapiens chromosome 5, BAC clone 342p15 (LBNL... 38 8.9
38gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 38 8.9
39gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete... 38 8.9
40gb|AC092989.6| Homo sapiens 3 BAC RP11-237P21 (Roswell Park Canc... 38 8.9
41gb|DQ366035.1| Clostridium perfringens strain CW92 plasmid pCW3,... 38 8.9
42emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment ... 38 8.9
43emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, ... 38 8.9
44gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, compl... 38 8.9
45gb|DQ419508.1| Uncultured phototrophic eukaryote clone ST15-90R ... 38 8.9
46dbj|AB236337.1| Clostridium perfringens F5603 plasmid pCPF5603 D... 38 8.9
47dbj|AB236336.1| Clostridium perfringens F4969 plasmid pCPF4969 D... 38 8.9
48gb|AC008689.8| Homo sapiens chromosome 5 clone CTB-61G23, comple... 38 8.9
49gb|AC008880.6| Homo sapiens chromosome 5 clone CTD-2210P10, comp... 38 8.9
50gb|AC016613.7| Homo sapiens chromosome 5 clone CTD-2207L2, compl... 38 8.9
51emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in ... 38 8.9
52emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in... 38 8.9
53emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 ... 38 8.9
54emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in... 38 8.9
55emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in... 38 8.9
56emb|AL928936.9| Zebrafish DNA sequence from clone CH211-133H2 in... 38 8.9
57gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61... 38 8.9
58emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 ... 38 8.9
59gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205... 38 8.9
60dbj|AP006354.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 8.9
61emb|AL683805.8| Mouse DNA sequence from clone RP23-183M16 on chr... 38 8.9 
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  335 bits (169), Expect = 3e-89
 Identities = 175/177 (98%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggcggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgccc 64
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 65   gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                                     
Query: 125  cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccgga 181
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccgga 978
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>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  135 bits (68), Expect = 5e-29
 Identities = 111/123 (90%), Gaps = 8/123 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    actgggcggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagt 60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 1114 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagt 1056

                                                                        
Query: 61   gcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaact 120
            ||||      ||||| ||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1055 gccc------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaact 1003

               
Query: 121  gaa 123
            |||
Sbjct: 1002 gaa 1000



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccgga 181
            |||||||||| ||||| ||||||||||  ||||||||||||||||||||
Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccgga 961
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>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  115 bits (58), Expect = 5e-23
 Identities = 104/116 (89%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgcccgta 67
            |||||||||||||||||||| ||||||||||||||  ||||||||||| ||| ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccg 179
            |||||||||| ||||||||||||||||  |||||||||||| |||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccg 991
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>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  113 bits (57), Expect = 2e-22
 Identities = 103/116 (88%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaaagtgcccgta 67
            |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029



 Score = 42.1 bits (21), Expect = 0.57
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccgga 181
            |||||||||| || ||||| |||||||  |||||||||||| |||||||
Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccgga 990
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>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score =  105 bits (53), Expect = 5e-20
 Identities = 56/57 (98%)
 Strand = Plus / Minus

                                                                     
Query: 1    actgggcggaaatctttaatatcaagggataatgcccagcaataaaccaatacacaa 57
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1145 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089



 Score = 40.1 bits (20), Expect = 2.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 142  aacacaagcatccgtcacctaacgggcttcacagaccgga 181
            |||| ||||| |||||||  |||||||||||| |||||||
Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccgga 999
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>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 95/107 (88%), Gaps = 5/107 (4%)
 Strand = Plus / Minus

                                                                        
Query: 17   taatatcaagggataatgcccagcaataaaccaatacacaaagtgcccgtaataataagc 76
            ||||||||||| ||||||||||||||  ||||||||||||| | ||||   |||||||| 
Sbjct: 1127 taatatcaaggcataatgcccagcaaataaccaatacacaa-gcgccc---ataataagt 1072

                                                           
Query: 77   aaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1071 aaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccg 179
            |||||||||| ||||||||||||||||  |||||||||||| |||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccg 989
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>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 103    ctgactctggaccaaactgaagcc 126
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
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>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible
            protein 1 mRNA, complete cds
          Length = 1315

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 2    ctgggcggaaatctttaatatcaagggataatgcccagcaataaaccaataca 54
            |||||| |||||| |||||| ||||| | ||||||||||   |||||||||||
Sbjct: 1265 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1213
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>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    acccaaactgaacacaagcat 152
              |||||||||||||||||||||
Sbjct: 134241 acccaaactgaacacaagcat 134261
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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     caataaaccaatacacaaagt 60
              |||||||||||||||||||||
Sbjct: 156591 caataaaccaatacacaaagt 156571
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>emb|AL832661.1|HSM803971 Homo sapiens genomic DNA; cDNA DKFZp313E1012 (from clone
            DKFZp313E1012)
          Length = 3233

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tttaatatcaagggataatgc 35
            |||||||||||||||||||||
Sbjct: 2536 tttaatatcaagggataatgc 2516
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>dbj|AK001423.1| Homo sapiens cDNA FLJ10561 fis, clone NT2RP2002672
          Length = 1665

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tttaatatcaagggataatgc 35
            |||||||||||||||||||||
Sbjct: 1016 tttaatatcaagggataatgc 996
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>gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, complete sequence
          Length = 166120

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tttaatatcaagggataatgc 35
             |||||||||||||||||||||
Sbjct: 10219 tttaatatcaagggataatgc 10239
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>gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, complete sequence
          Length = 185857

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     tttaatatcaagggataatgc 35
              |||||||||||||||||||||
Sbjct: 182517 tttaatatcaagggataatgc 182537
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 2        ctgggcggaaatctttaatatcaagggataatgcccagcaataaaccaataca 54
                |||||| |||||| |||||| ||||| | ||||||||||   |||||||||||
Sbjct: 27184022 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 27184074
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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    caataaaccaatacacaaagt 60
             |||||||||||||||||||||
Sbjct: 34762 caataaaccaatacacaaagt 34782
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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 2     ctgggcggaaatctttaatatcaagggataatgcccagcaataaaccaataca 54
             |||||| |||||| |||||| ||||| | ||||||||||   |||||||||||
Sbjct: 34693 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 34745
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>emb|BX648964.1|HSM809115 Homo sapiens mRNA; cDNA DKFZp686J0156 (from clone DKFZp686J0156)
          Length = 4471

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tttaatatcaagggataatgc 35
            |||||||||||||||||||||
Sbjct: 3803 tttaatatcaagggataatgc 3783
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>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full
            insert sequence
          Length = 1292

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 2    ctgggcggaaatctttaatatcaagggataatgcccagcaataaaccaataca 54
            |||||| |||||| |||||| ||||| | ||||||||||   |||||||||||
Sbjct: 1277 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1225
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>gb|AC005384.2|AC005384 b326h7, complete sequence
          Length = 178292

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    tttaatatcaagggataatgc 35
             |||||||||||||||||||||
Sbjct: 66266 tttaatatcaagggataatgc 66246
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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679
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>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aaataaacttaaacaacatc 96
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884
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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 65     gtaataataagcaaataaacttaaacaa 92
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    tcaagggataatgcccagcaataa 45
             ||||||||||| ||||||||||||
Sbjct: 10316 tcaagggataaagcccagcaataa 10293
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>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623
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>emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chromosome 11 Contains
            the 3' end of the Galnt9 gene for
            UDP-N-acetyl-alpha-D-galactosamine: polypeptide
            N-acetylgalactosaminyltransferase 9, a novel gene, a
            novel gene (2310079P12Rik), the  Hand1 gene for heart and
            neural crest derivatives expressed transcript 1 (eHAND,
            Thing1), a mitochondrial ribosomal protein S16 pseudogene
            (Mrps16) and two CpG islands, complete sequence
          Length = 132671

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   tatcaagggataatgcccag 39
            ||||||||||||||||||||
Sbjct: 6043 tatcaagggataatgcccag 6062
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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112
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>ref|NG_004451.1| Rattus norvegicus RT1 class 1, M1, pseudogene 1 (RT1-M1-1) on
           chromosome 20
          Length = 2603

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 22  tcaagggataatgcccagcaataa 45
           ||||||||||| ||||||||||||
Sbjct: 747 tcaagggataaagcccagcaataa 724
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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ataatgcccagcaataaacc 48
             ||||||||||||||||||||
Sbjct: 49843 ataatgcccagcaataaacc 49824
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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 97   caggacctgactctggaccaaactgaag 124
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249
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>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177
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>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476
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>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 97    caggacctgactctggaccaaactgaag 124
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661
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>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778
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>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence
          Length = 161249

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 73     aagcaaataaacttaaacaacat 95
              |||||||| ||||||||||||||
Sbjct: 115287 aagcaaatgaacttaaacaacat 115309
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>gb|AF165926.2| Homo sapiens chromosome 5p13 BAC clone djn085o06 containing NUP155
             gene, complete sequence
          Length = 165617

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    caataaaccaatacacaaa 58
             |||||||||||||||||||
Sbjct: 24811 caataaaccaatacacaaa 24829
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>gb|AC005371.1| Homo sapiens chromosome 5, BAC clone 342p15 (LBNL H189), complete
             sequence
          Length = 142600

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 38    agcaataaaccaatacacaaagt 60
             |||||||||| ||||||||||||
Sbjct: 70521 agcaataaacaaatacacaaagt 70499
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 73     aagcaaataaacttaaacaacat 95
              |||||||| ||||||||||||||
Sbjct: 254007 aagcaaatgaacttaaacaacat 254029
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>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence
          Length = 172393

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    ggataatgcccagcaataa 45
             |||||||||||||||||||
Sbjct: 72733 ggataatgcccagcaataa 72715
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>gb|AC092989.6| Homo sapiens 3 BAC RP11-237P21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168492

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     aataataagcaaataaact 85
              |||||||||||||||||||
Sbjct: 137617 aataataagcaaataaact 137635
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>gb|DQ366035.1| Clostridium perfringens strain CW92 plasmid pCW3, complete sequence
          Length = 47263

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    aagcaaataaacttaaaca 91
             |||||||||||||||||||
Sbjct: 37036 aagcaaataaacttaaaca 37018
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>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24
          Length = 303250

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 142   aacacaagcatccgtcacc 160
             |||||||||||||||||||
Sbjct: 17322 aacacaagcatccgtcacc 17340
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>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence
          Length = 190733

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 65   gtaataataagcaaataaa 83
            |||||||||||||||||||
Sbjct: 4564 gtaataataagcaaataaa 4546
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>gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, complete sequence
          Length = 177782

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     caataaaccaatacacaaa 58
              |||||||||||||||||||
Sbjct: 115865 caataaaccaatacacaaa 115883
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>gb|DQ419508.1| Uncultured phototrophic eukaryote clone ST15-90R 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 483

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  aataataagcaaataaact 85
           |||||||||||||||||||
Sbjct: 97  aataataagcaaataaact 115
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>dbj|AB236337.1| Clostridium perfringens F5603 plasmid pCPF5603 DNA, complete sequence
          Length = 75268

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    aagcaaataaacttaaaca 91
             |||||||||||||||||||
Sbjct: 65232 aagcaaataaacttaaaca 65250
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>dbj|AB236336.1| Clostridium perfringens F4969 plasmid pCPF4969 DNA, complete sequence
          Length = 70480

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    aagcaaataaacttaaaca 91
             |||||||||||||||||||
Sbjct: 27126 aagcaaataaacttaaaca 27108
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>gb|AC008689.8| Homo sapiens chromosome 5 clone CTB-61G23, complete sequence
          Length = 138824

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 38     agcaataaaccaatacacaaagt 60
              |||||||||| ||||||||||||
Sbjct: 128881 agcaataaacaaatacacaaagt 128859
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>gb|AC008880.6| Homo sapiens chromosome 5 clone CTD-2210P10, complete sequence
          Length = 105975

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    caataaaccaatacacaaa 58
             |||||||||||||||||||
Sbjct: 48208 caataaaccaatacacaaa 48226
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>gb|AC016613.7| Homo sapiens chromosome 5 clone CTD-2207L2, complete sequence
          Length = 121131

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     caataaaccaatacacaaa 58
              |||||||||||||||||||
Sbjct: 107510 caataaaccaatacacaaa 107492
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>emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in linkage group 4, complete
              sequence
          Length = 211817

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 70     aataagcaaataaacttaaacaa 92
              ||||| |||||||||||||||||
Sbjct: 136049 aataaacaaataaacttaaacaa 136071
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>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
              complete sequence
          Length = 180994

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     gtaataataagcaaataaa 83
              |||||||||||||||||||
Sbjct: 172280 gtaataataagcaaataaa 172298
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>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8,
              complete sequence
          Length = 234864

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     caaataaacttaaacaaca 94
              |||||||||||||||||||
Sbjct: 132686 caaataaacttaaacaaca 132704
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>emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in linkage group 4,
             complete sequence
          Length = 115188

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    caataaaccaatacacaaagtgc 62
             ||||||| |||||||||||||||
Sbjct: 74986 caataaatcaatacacaaagtgc 74964
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>emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in linkage group 4,
             complete sequence
          Length = 228177

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 70    aataagcaaataaacttaaacaa 92
             ||||| |||||||||||||||||
Sbjct: 75717 aataaacaaataaacttaaacaa 75695
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>emb|AL928936.9| Zebrafish DNA sequence from clone CH211-133H2 in linkage group 4,
              complete sequence
          Length = 157706

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 40     caataaaccaatacacaaagtgc 62
              ||||||| |||||||||||||||
Sbjct: 108857 caataaatcaatacacaaagtgc 108835
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>gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61 of 73 of the complete
             sequence
          Length = 305143

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    ggataatgcccagcaataa 45
             |||||||||||||||||||
Sbjct: 16028 ggataatgcccagcaataa 16046
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>emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 in linkage group 6,
             complete sequence
          Length = 187638

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    caaataaacttaaacaaca 94
             |||||||||||||||||||
Sbjct: 88821 caaataaacttaaacaaca 88839
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>gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205)) DNA sequence, complete
             sequence
          Length = 80993

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    ggataatgcccagcaataa 45
             |||||||||||||||||||
Sbjct: 36643 ggataatgcccagcaataa 36625
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>dbj|AP006354.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16F22, TM0349b,
             complete sequence
          Length = 74471

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    caaataaacttaaacaaca 94
             |||||||||||||||||||
Sbjct: 47491 caaataaacttaaacaaca 47509
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>emb|AL683805.8| Mouse DNA sequence from clone RP23-183M16 on chromosome 2, complete
             sequence
          Length = 216508

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    agcaataaaccaatacaca 56
             |||||||||||||||||||
Sbjct: 73581 agcaataaaccaatacaca 73599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,627,135
Number of Sequences: 3902068
Number of extensions: 1627135
Number of successful extensions: 122020
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121836
Number of HSP's gapped (non-prelim): 182
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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