Clone Name | rbart25d03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK103571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132N07, full insert sequence Length = 1800 Score = 167 bits (84), Expect = 4e-38 Identities = 120/132 (90%) Strand = Plus / Minus Query: 386 ttcttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccat 445 ||||||| || ||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct: 1387 ttcttccacctcttatgccgctgttaggcttccgctcctcaacatatatctgccgcccat 1328 Query: 446 ttatttcaagtggtgaagccctcaatgcattgtgtacaccactcagttcctcgaattcca 505 ||||||||| |||||||||| ||||||||||||| |||||||| ||||| |||||||||| Sbjct: 1327 ttatttcaattggtgaagccttcaatgcattgtgaacaccactaagttcttcgaattcca 1268 Query: 506 caaaagcatagt 517 | || ||||||| Sbjct: 1267 cgaacgcatagt 1256 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 258 ccccaaaatgcccctctcgtggtgagggacacgctggta 296 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 1530 ccccaaaatgcccctctcatggtgaggaacacgctggta 1492
>ref|XM_464011.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1536 Score = 161 bits (81), Expect = 3e-36 Identities = 102/109 (93%) Strand = Plus / Minus Query: 409 ttaggcttccgctcctcaacatatatctgccgcccatttatttcaagtggtgaagccctc 468 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct: 1160 ttaggcttccgctcctcaacatatatctgccgcccatttatttcaattggtgaagccttc 1101 Query: 469 aatgcattgtgtacaccactcagttcctcgaattccacaaaagcatagt 517 ||||||||||| |||||||| ||||| ||||||||||| || ||||||| Sbjct: 1100 aatgcattgtgaacaccactaagttcttcgaattccacgaacgcatagt 1052 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 258 ccccaaaatgcccctctcgtggtgagggacacgctggta 296 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 1412 ccccaaaatgcccctctcatggtgaggaacacgctggta 1374
>gb|BT016230.1| Zea mays clone Contig63 mRNA sequence Length = 1112 Score = 159 bits (80), Expect = 1e-35 Identities = 116/128 (90%) Strand = Plus / Minus Query: 388 cttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccattt 447 ||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 699 cttccacctcttattccgctatttggcttcctctcctcaacatatatctgccgcccattt 640 Query: 448 atttcaagtggtgaagccctcaatgcattgtgtacaccactcagttcctcgaattccaca 507 ||||||| |||||||||| | || |||||||||||||| || ||||||||||||||||| Sbjct: 639 atttcaattggtgaagcctttaacgcattgtgtacaccgctgagttcctcgaattccacg 580 Query: 508 aaagcata 515 |||||||| Sbjct: 579 aaagcata 572 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Minus Query: 265 atgcccctctcgtggtgagggacacgctggtaaccgttcgacttcccacggctaccgttg 324 ||||||||||| |||||||| |||| ||||||||| ||| |||||||| ||| ||| Sbjct: 825 atgcccctctcttggtgaggagcacgaccgtaaccgtttgacctcccacggttactattg 766 Query: 325 tactcgtcacctc 337 |||||||| |||| Sbjct: 765 tactcgtcgcctc 753
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 388 cttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccattt 447 ||||| || ||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 1652657 cttccacctcttatgccgctgttaggcttccgctcctcaacatatatctgccgcccattt 1652716 Query: 448 atttcaagtggtgaagcc 465 ||||||| |||||||||| Sbjct: 1652717 atttcaattggtgaagcc 1652734 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 467 tcaatgcattgtgtacaccactcagttcctcgaattccacaaaagcatagt 517 ||||||||||||| |||||||| ||||| ||||||||||| || ||||||| Sbjct: 1652978 tcaatgcattgtgaacaccactaagttcttcgaattccacgaacgcatagt 1653028 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 258 ccccaaaatgcccctctcgtggtgagggacacgctggta 296 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 1652377 ccccaaaatgcccctctcatggtgaggaacacgctggta 1652415
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1007_D04 Length = 125503 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 388 cttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccattt 447 ||||| || ||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 89760 cttccacctcttatgccgctgttaggcttccgctcctcaacatatatctgccgcccattt 89819 Query: 448 atttcaagtggtgaagcc 465 ||||||| |||||||||| Sbjct: 89820 atttcaattggtgaagcc 89837 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 467 tcaatgcattgtgtacaccactcagttcctcgaattccacaaaagcatagt 517 ||||||||||||| |||||||| ||||| ||||||||||| || ||||||| Sbjct: 90081 tcaatgcattgtgaacaccactaagttcttcgaattccacgaacgcatagt 90131 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 258 ccccaaaatgcccctctcgtggtgagggacacgctggta 296 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 89480 ccccaaaatgcccctctcatggtgaggaacacgctggta 89518
>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence Length = 203909 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 tcaaaacctcttatgcttcctcctt 232 |||||||||| |||||||||||||| Sbjct: 154818 tcaaaacctcctatgcttcctcctt 154842
>emb|AL121845.20|HSJ583P15 Human DNA sequence from clone RP4-583P15 on chromosome 20 Contains the 3' end of the TNFRSF6B gene for member 6 (decoy) of tumor necrosis factor receptor, the ARFRP1 gene for ADP-ribosylation factor related protein 1, the gene for a novel protein (KIAA1847, FLJ14972), the gene for a novel protein (FLJ20406), the SLC2A4RG gene for SLC2A4 regulator (GEF), the 3' end of the BTBD4 gene for BTB (POZ) domain containing 4, a novel gene and ten CpG islands, complete sequence Length = 120917 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggcaaaccccaaaaccgaaa 140 |||||||||||||||||||| Sbjct: 64427 ggcaaaccccaaaaccgaaa 64408
>emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in linkage group 18, complete sequence Length = 121656 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 cccatttatttcaagtggtg 460 |||||||||||||||||||| Sbjct: 42769 cccatttatttcaagtggtg 42750
>gb|AC096563.2| Homo sapiens BAC clone RP11-277J14 from 4, complete sequence Length = 110282 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 accctctgccaccgccaccaaagc 367 |||||||||||| ||||||||||| Sbjct: 54376 accctctgccactgccaccaaagc 54399
>gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosome 8, complete sequence Length = 170167 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 cagaatatagcaacataagtatct 67 |||||||||||||||||| ||||| Sbjct: 60677 cagaatatagcaacataaatatct 60654
>gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172953 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gaaaatgcaacctaacagaa 156 |||||||||||||||||||| Sbjct: 109652 gaaaatgcaacctaacagaa 109633
>gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, complete sequence Length = 186464 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gaaaatgcaacctaacagaa 156 |||||||||||||||||||| Sbjct: 14932 gaaaatgcaacctaacagaa 14951
>gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222182 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 atgcaacctaacagaatgga 160 |||||||||||||||||||| Sbjct: 141486 atgcaacctaacagaatgga 141467
>gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, complete sequence Length = 242383 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gagaagacagaatatagcaa 56 |||||||||||||||||||| Sbjct: 170647 gagaagacagaatatagcaa 170628
>gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complete sequence Length = 157089 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 cagaatatagcaacataagtatct 67 |||||||||||||||||| ||||| Sbjct: 7186 cagaatatagcaacataaatatct 7163
>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b, complete sequence Length = 45450 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 accctctgccaccgccacca 363 |||||||||||||||||||| Sbjct: 44380 accctctgccaccgccacca 44399
>dbj|AP004577.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10N22, TM0381, complete sequence Length = 80655 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 accctctgccaccgccacca 363 |||||||||||||||||||| Sbjct: 64274 accctctgccaccgccacca 64293
>gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p, complete sequence Length = 176223 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctcaaggcaaaccccaaaac 135 |||||||||||||||||||| Sbjct: 115548 ctcaaggcaaaccccaaaac 115567 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,855,368 Number of Sequences: 3902068 Number of extensions: 3855368 Number of successful extensions: 66019 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65944 Number of HSP's gapped (non-prelim): 75 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)