ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103571.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
2ref|XM_464011.1| Oryza sativa (japonica cultivar-group), mRNA 161 3e-36
3gb|BT016230.1| Zea mays clone Contig63 mRNA sequence 159 1e-35
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
5dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
6gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome... 42 1.8
7emb|AL121845.20|HSJ583P15 Human DNA sequence from clone RP4-583P... 40 7.0
8emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in ... 40 7.0
9gb|AC096563.2| Homo sapiens BAC clone RP11-277J14 from 4, comple... 40 7.0
10gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosom... 40 7.0
11gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Can... 40 7.0
12gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, comple... 40 7.0
13gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Can... 40 7.0
14gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, c... 40 7.0
15gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complet... 40 7.0
16dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.0
17dbj|AP004577.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.0
18gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p... 40 7.0

>dbj|AK103571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132N07, full
            insert sequence
          Length = 1800

 Score =  167 bits (84), Expect = 4e-38
 Identities = 120/132 (90%)
 Strand = Plus / Minus

                                                                        
Query: 386  ttcttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccat 445
            ||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 1387 ttcttccacctcttatgccgctgttaggcttccgctcctcaacatatatctgccgcccat 1328

                                                                        
Query: 446  ttatttcaagtggtgaagccctcaatgcattgtgtacaccactcagttcctcgaattcca 505
            ||||||||| |||||||||| ||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 1327 ttatttcaattggtgaagccttcaatgcattgtgaacaccactaagttcttcgaattcca 1268

                        
Query: 506  caaaagcatagt 517
            | || |||||||
Sbjct: 1267 cgaacgcatagt 1256



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 258  ccccaaaatgcccctctcgtggtgagggacacgctggta 296
            |||||||||||||||||| |||||||| |||||||||||
Sbjct: 1530 ccccaaaatgcccctctcatggtgaggaacacgctggta 1492



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>ref|XM_464011.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1536

 Score =  161 bits (81), Expect = 3e-36
 Identities = 102/109 (93%)
 Strand = Plus / Minus

                                                                        
Query: 409  ttaggcttccgctcctcaacatatatctgccgcccatttatttcaagtggtgaagccctc 468
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 1160 ttaggcttccgctcctcaacatatatctgccgcccatttatttcaattggtgaagccttc 1101

                                                             
Query: 469  aatgcattgtgtacaccactcagttcctcgaattccacaaaagcatagt 517
            ||||||||||| |||||||| ||||| ||||||||||| || |||||||
Sbjct: 1100 aatgcattgtgaacaccactaagttcttcgaattccacgaacgcatagt 1052



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 258  ccccaaaatgcccctctcgtggtgagggacacgctggta 296
            |||||||||||||||||| |||||||| |||||||||||
Sbjct: 1412 ccccaaaatgcccctctcatggtgaggaacacgctggta 1374



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>gb|BT016230.1| Zea mays clone Contig63 mRNA sequence
          Length = 1112

 Score =  159 bits (80), Expect = 1e-35
 Identities = 116/128 (90%)
 Strand = Plus / Minus

                                                                       
Query: 388 cttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccattt 447
           ||||| || |||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 699 cttccacctcttattccgctatttggcttcctctcctcaacatatatctgccgcccattt 640

                                                                       
Query: 448 atttcaagtggtgaagccctcaatgcattgtgtacaccactcagttcctcgaattccaca 507
           ||||||| |||||||||| | || |||||||||||||| || ||||||||||||||||| 
Sbjct: 639 atttcaattggtgaagcctttaacgcattgtgtacaccgctgagttcctcgaattccacg 580

                   
Query: 508 aaagcata 515
           ||||||||
Sbjct: 579 aaagcata 572



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 265 atgcccctctcgtggtgagggacacgctggtaaccgttcgacttcccacggctaccgttg 324
           ||||||||||| ||||||||  ||||   ||||||||| ||| |||||||| |||  |||
Sbjct: 825 atgcccctctcttggtgaggagcacgaccgtaaccgtttgacctcccacggttactattg 766

                        
Query: 325 tactcgtcacctc 337
           |||||||| ||||
Sbjct: 765 tactcgtcgcctc 753



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 4e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                           
Query: 388     cttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccattt 447
               ||||| || ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1652657 cttccacctcttatgccgctgttaggcttccgctcctcaacatatatctgccgcccattt 1652716

                                 
Query: 448     atttcaagtggtgaagcc 465
               ||||||| ||||||||||
Sbjct: 1652717 atttcaattggtgaagcc 1652734



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                  
Query: 467     tcaatgcattgtgtacaccactcagttcctcgaattccacaaaagcatagt 517
               ||||||||||||| |||||||| ||||| ||||||||||| || |||||||
Sbjct: 1652978 tcaatgcattgtgaacaccactaagttcttcgaattccacgaacgcatagt 1653028



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                      
Query: 258     ccccaaaatgcccctctcgtggtgagggacacgctggta 296
               |||||||||||||||||| |||||||| |||||||||||
Sbjct: 1652377 ccccaaaatgcccctctcatggtgaggaacacgctggta 1652415



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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score =  107 bits (54), Expect = 4e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                         
Query: 388   cttcctccccttattccactattaggcttccgctcctcaacatatatctgccgcccattt 447
             ||||| || ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 89760 cttccacctcttatgccgctgttaggcttccgctcctcaacatatatctgccgcccattt 89819

                               
Query: 448   atttcaagtggtgaagcc 465
             ||||||| ||||||||||
Sbjct: 89820 atttcaattggtgaagcc 89837



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 467   tcaatgcattgtgtacaccactcagttcctcgaattccacaaaagcatagt 517
             ||||||||||||| |||||||| ||||| ||||||||||| || |||||||
Sbjct: 90081 tcaatgcattgtgaacaccactaagttcttcgaattccacgaacgcatagt 90131



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 258   ccccaaaatgcccctctcgtggtgagggacacgctggta 296
             |||||||||||||||||| |||||||| |||||||||||
Sbjct: 89480 ccccaaaatgcccctctcatggtgaggaacacgctggta 89518



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>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence
          Length = 203909

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 208    tcaaaacctcttatgcttcctcctt 232
              |||||||||| ||||||||||||||
Sbjct: 154818 tcaaaacctcctatgcttcctcctt 154842



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>emb|AL121845.20|HSJ583P15 Human DNA sequence from clone RP4-583P15 on chromosome 20 Contains the
             3' end of the TNFRSF6B gene for member 6 (decoy) of tumor
             necrosis factor receptor, the ARFRP1 gene for
             ADP-ribosylation factor related protein 1, the gene for a
             novel protein (KIAA1847, FLJ14972), the gene for a novel
             protein (FLJ20406), the SLC2A4RG gene for SLC2A4 regulator
             (GEF),  the 3' end of the BTBD4 gene for BTB (POZ) domain
             containing 4, a novel gene and ten CpG islands, complete
             sequence
          Length = 120917

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   ggcaaaccccaaaaccgaaa 140
             ||||||||||||||||||||
Sbjct: 64427 ggcaaaccccaaaaccgaaa 64408



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>emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in linkage group 18,
             complete sequence
          Length = 121656

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   cccatttatttcaagtggtg 460
             ||||||||||||||||||||
Sbjct: 42769 cccatttatttcaagtggtg 42750



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>gb|AC096563.2| Homo sapiens BAC clone RP11-277J14 from 4, complete sequence
          Length = 110282

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 344   accctctgccaccgccaccaaagc 367
             |||||||||||| |||||||||||
Sbjct: 54376 accctctgccactgccaccaaagc 54399



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>gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosome 8, complete sequence
          Length = 170167

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    cagaatatagcaacataagtatct 67
             |||||||||||||||||| |||||
Sbjct: 60677 cagaatatagcaacataaatatct 60654



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>gb|AC067721.22| Homo sapiens 3 BAC RP11-111F10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172953

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    gaaaatgcaacctaacagaa 156
              ||||||||||||||||||||
Sbjct: 109652 gaaaatgcaacctaacagaa 109633



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>gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, complete sequence
          Length = 186464

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gaaaatgcaacctaacagaa 156
             ||||||||||||||||||||
Sbjct: 14932 gaaaatgcaacctaacagaa 14951



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>gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222182

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    atgcaacctaacagaatgga 160
              ||||||||||||||||||||
Sbjct: 141486 atgcaacctaacagaatgga 141467



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>gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, complete sequence
          Length = 242383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gagaagacagaatatagcaa 56
              ||||||||||||||||||||
Sbjct: 170647 gagaagacagaatatagcaa 170628



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>gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complete sequence
          Length = 157089

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 44   cagaatatagcaacataagtatct 67
            |||||||||||||||||| |||||
Sbjct: 7186 cagaatatagcaacataaatatct 7163



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>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b,
             complete sequence
          Length = 45450

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   accctctgccaccgccacca 363
             ||||||||||||||||||||
Sbjct: 44380 accctctgccaccgccacca 44399



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>dbj|AP004577.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10N22, TM0381,
             complete sequence
          Length = 80655

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   accctctgccaccgccacca 363
             ||||||||||||||||||||
Sbjct: 64274 accctctgccaccgccacca 64293



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>gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p, complete sequence
          Length = 176223

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ctcaaggcaaaccccaaaac 135
              ||||||||||||||||||||
Sbjct: 115548 ctcaaggcaaaccccaaaac 115567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,855,368
Number of Sequences: 3902068
Number of extensions: 3855368
Number of successful extensions: 66019
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65944
Number of HSP's gapped (non-prelim): 75
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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