ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479559.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-13
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AK111318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
5dbj|AK110569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
6ref|XM_323995.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.094
7ref|XM_954090.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.094
8emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmi... 46 0.094
9gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.5
10gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.5
11ref|XM_931973.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.5
12dbj|AB231538.1| Edwardsiella tarda wbdC gene for capsular polysa... 42 1.5
13emb|AJ326268.1|HSA326268 Homo sapiens genomic sequence surroundi... 42 1.5
14gb|AC139149.6| Homo sapiens chromosome 17, clone RP13-766D20, co... 42 1.5
15ref|XM_524268.1| PREDICTED: Pan troglodytes similar to PLD3 prot... 40 5.8
16gb|AC127351.3| Mus musculus BAC clone RP23-66K20 from chromosome... 40 5.8
17gb|AC122365.4| Mus musculus BAC clone RP23-447A7 from chromosome... 40 5.8
18emb|AL110487.1|CEY39E4B Caenorhabditis elegans YAC Y39E4B, compl... 40 5.8
19gb|AC115120.4| Mus musculus BAC clone RP23-116M23 from 16, compl... 40 5.8
20emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.8
21emb|CR861179.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1816 (from cl... 40 5.8
22emb|CR861101.1| Pongo pygmaeus mRNA; cDNA DKFZp459B2114 (from cl... 40 5.8
23gb|DQ397859.1| Cenarchaeum symbiosum clone C07D01, complete sequ... 40 5.8
24gb|DQ397853.1| Cenarchaeum symbiosum clone C16D03, complete sequ... 40 5.8
25dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.8
26dbj|AK042832.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 5.8
27gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, comple... 40 5.8
28dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
29dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
30emb|AL670648.14| Mouse DNA sequence from clone RP23-288N2 on chr... 40 5.8
31gb|AY108850.1| Zea mays PCO064986 mRNA sequence 40 5.8
32gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.8
33gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, compl... 40 5.8 
>ref|XM_479559.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 942

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 254 cgggtactcctcgtagatgaacctcccctcctgcacgatccggcagcccttgcaccctct 313
           ||||||||||||||| | |||| | |||||||| |||| |||||| ||||||||||||||
Sbjct: 868 cgggtactcctcgtacacgaacttgccctcctgaacgagccggcaacccttgcaccctct 809

                      
Query: 314 gcacgacgacg 324
           |||||||||||
Sbjct: 808 gcacgacgacg 798
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 254      cgggtactcctcgtagatgaacctcccctcctgcacgatccggcagcccttgcaccctct 313
                ||||||||||||||| | |||| | |||||||| |||| |||||| ||||||||||||||
Sbjct: 28867122 cgggtactcctcgtacacgaacttgccctcctgaacgagccggcaacccttgcaccctct 28867063

                           
Query: 314      gcacgacgacg 324
                |||||||||||
Sbjct: 28867062 gcacgacgacg 28867052
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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0008J01
          Length = 159900

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                          
Query: 254    cgggtactcctcgtagatgaacctcccctcctgcacgatccggcagcccttgcaccctct 313
              ||||||||||||||| | |||| | |||||||| |||| |||||| ||||||||||||||
Sbjct: 124808 cgggtactcctcgtacacgaacttgccctcctgaacgagccggcaacccttgcaccctct 124749

                         
Query: 314    gcacgacgacg 324
              |||||||||||
Sbjct: 124748 gcacgacgacg 124738
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>dbj|AK111318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C11, full
           insert sequence
          Length = 799

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 254 cgggtactcctcgtagatgaacctcccctcctgcacgatccggcagcccttgcaccctct 313
           ||||||||||||||| | |||| | |||||||| |||| |||||| ||||||||||||||
Sbjct: 35  cgggtactcctcgtacacgaacttgccctcctgaacgagccggcaacccttgcaccctct 94

                      
Query: 314 gcacgacgacg 324
           |||||||||||
Sbjct: 95  gcacgacgacg 105
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>dbj|AK110569.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D09, full
           insert sequence
          Length = 942

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 254 cgggtactcctcgtagatgaacctcccctcctgcacgatccggcagcccttgcaccctct 313
           ||||||||||||||| | |||| | |||||||| |||| |||||| ||||||||||||||
Sbjct: 868 cgggtactcctcgtacacgaacttgccctcctgaacgagccggcaacccttgcaccctct 809

                      
Query: 314 gcacgacgacg 324
           |||||||||||
Sbjct: 808 gcacgacgacg 798
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>ref|XM_323995.1| Neurospora crassa OR74A hypothetical protein (NCU04640.1) partial
           mRNA
          Length = 924

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 343 tcggcgggggctgcatcatctgcagcggcgtcggcatcg 381
           ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 248 tcggcaggggcggcctcatcagcagcggcgtcggcatcg 210
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>ref|XM_954090.1| Neurospora crassa OR74A hypothetical protein (NCU04640.1) partial
           mRNA
          Length = 924

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 343 tcggcgggggctgcatcatctgcagcggcgtcggcatcg 381
           ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 248 tcggcaggggcggcctcatcagcagcggcgtcggcatcg 210
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>emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3
          Length = 83192

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 343   tcggcgggggctgcatcatctgcagcggcgtcggcatcg 381
             ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 33476 tcggcaggggcggcctcatcagcagcggcgtcggcatcg 33438
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 362    ctgcagcggcgtcggcatcgccggcggcc 390
              |||| ||| ||||||||||||||||||||
Sbjct: 305917 ctgccgcgtcgtcggcatcgccggcggcc 305945
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 364     gcagcggcgtcggcatcgccggcgg 388
               ||||||||||||||||||| |||||
Sbjct: 1850071 gcagcggcgtcggcatcgctggcgg 1850047



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 367    gcggcgtcggcatcgccggcg 387
              |||||||||||||||||||||
Sbjct: 444989 gcggcgtcggcatcgccggcg 444969



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    cggcgtcggcatcgccggcggcca 391
              |||||||||| |||||||||||||
Sbjct: 703278 cggcgtcggcttcgccggcggcca 703301
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>ref|XM_931973.1| PREDICTED: Homo sapiens hypothetical protein LOC644012 (LOC644012),
           mRNA
          Length = 678

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 324 gccggcccgccgcagcccatcggcg 348
           ||||||||||||||||| |||||||
Sbjct: 203 gccggcccgccgcagccaatcggcg 227
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>dbj|AB231538.1| Edwardsiella tarda wbdC gene for capsular polysaccharide
           biosynthesis glycosyltransferase, partial cds, clone:
           KEC05C08
          Length = 506

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 325 ccggcccgccgcagcccatcg 345
           |||||||||||||||||||||
Sbjct: 92  ccggcccgccgcagcccatcg 72
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>emb|AJ326268.1|HSA326268 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GB4C
          Length = 658

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 324 gccggcccgccgcagcccatcggcg 348
           ||||||||||||||||| |||||||
Sbjct: 32  gccggcccgccgcagccaatcggcg 8
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>gb|AC139149.6| Homo sapiens chromosome 17, clone RP13-766D20, complete sequence
          Length = 81577

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 324   gccggcccgccgcagcccatcggcg 348
             ||||||||||||||||| |||||||
Sbjct: 49828 gccggcccgccgcagccaatcggcg 49852
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>ref|XM_524268.1| PREDICTED: Pan troglodytes similar to PLD3 protein (LOC468882), mRNA
          Length = 1431

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  cggcccgccgcagcccatcg 345
            ||||||||||||||||||||
Sbjct: 1057 cggcccgccgcagcccatcg 1038
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>gb|AC127351.3| Mus musculus BAC clone RP23-66K20 from chromosome 5, complete sequence
          Length = 238781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   gcccgccgcagcccatcggc 347
             ||||||||||||||||||||
Sbjct: 50936 gcccgccgcagcccatcggc 50917
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>gb|AC122365.4| Mus musculus BAC clone RP23-447A7 from chromosome 5, complete sequence
          Length = 195492

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    gcccgccgcagcccatcggc 347
              ||||||||||||||||||||
Sbjct: 146158 gcccgccgcagcccatcggc 146139
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>emb|AL110487.1|CEY39E4B Caenorhabditis elegans YAC Y39E4B, complete sequence
          Length = 155693

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     atatattttcacactgaaaaatat 52
              ||||||||||||||| ||||||||
Sbjct: 138172 atatattttcacactaaaaaatat 138195
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>gb|AC115120.4| Mus musculus BAC clone RP23-116M23 from 16, complete sequence
          Length = 222066

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     attttcacactgaaaaatat 52
              ||||||||||||||||||||
Sbjct: 217749 attttcacactgaaaaatat 217768
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gcggcgtcggcatcgccggc 386
             ||||||||||||||||||||
Sbjct: 50495 gcggcgtcggcatcgccggc 50476
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>emb|CR861179.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1816 (from clone DKFZp459H1816)
          Length = 2189

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  cggcccgccgcagcccatcg 345
            ||||||||||||||||||||
Sbjct: 1444 cggcccgccgcagcccatcg 1425
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>emb|CR861101.1| Pongo pygmaeus mRNA; cDNA DKFZp459B2114 (from clone DKFZp459B2114)
          Length = 2210

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  cggcccgccgcagcccatcg 345
            ||||||||||||||||||||
Sbjct: 1464 cggcccgccgcagcccatcg 1445
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>gb|DQ397859.1| Cenarchaeum symbiosum clone C07D01, complete sequence
          Length = 43795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   gtcggcatcgccggcggcca 391
             ||||||||||||||||||||
Sbjct: 27967 gtcggcatcgccggcggcca 27948
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>gb|DQ397853.1| Cenarchaeum symbiosum clone C16D03, complete sequence
          Length = 42367

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   gtcggcatcgccggcggcca 391
             ||||||||||||||||||||
Sbjct: 25503 gtcggcatcgccggcggcca 25522
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 367     gcggcgtcggcatcgccggcggcc 390
               ||||| ||||||||||||||||||
Sbjct: 2134693 gcggcctcggcatcgccggcggcc 2134670
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>dbj|AK042832.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730028H24
           product:unclassifiable, full insert sequence
          Length = 1333

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  attttcacactgaaaaatat 52
           ||||||||||||||||||||
Sbjct: 949 attttcacactgaaaaatat 968
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>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence
          Length = 164620

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    catatattttcacactgaaa 47
             ||||||||||||||||||||
Sbjct: 64223 catatattttcacactgaaa 64204
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 365     cagcggcgtcggcatcgccg 384
               ||||||||||||||||||||
Sbjct: 6789076 cagcggcgtcggcatcgccg 6789057
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 367    gcggcgtcggcatcgccggcggcc 390
              |||||||||| |||||||||||||
Sbjct: 826793 gcggcgtcgggatcgccggcggcc 826816
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>emb|AL670648.14| Mouse DNA sequence from clone RP23-288N2 on chromosome X, complete
              sequence
          Length = 211413

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     atattttcacactgaaaaat 50
              ||||||||||||||||||||
Sbjct: 100448 atattttcacactgaaaaat 100467
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>gb|AY108850.1| Zea mays PCO064986 mRNA sequence
          Length = 846

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 364 gcagcggcgtcggcatcgccggcg 387
           ||||||||||| ||||||||||||
Sbjct: 661 gcagcggcgtccgcatcgccggcg 684
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 315     cacgacgacgccggcccgcc 334
               ||||||||||||||||||||
Sbjct: 2689391 cacgacgacgccggcccgcc 2689372
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>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence
          Length = 209585

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    attttcacactgaaaaatat 52
             ||||||||||||||||||||
Sbjct: 11601 attttcacactgaaaaatat 11620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,250,732
Number of Sequences: 3902068
Number of extensions: 3250732
Number of successful extensions: 60999
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60398
Number of HSP's gapped (non-prelim): 601
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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