ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 438 e-120
2dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhi... 242 7e-61
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
5gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
7dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
8dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
10dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for ch... 56 9e-05
11dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
12dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
13dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
14dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
15dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
16dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for ... 56 9e-05
17dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
18dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
19dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
20ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
22dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
23dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
24ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.33
25gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv.... 44 0.33
26gb|AY107125.1| Zea mays PCO125117 mRNA sequence 44 0.33
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
28emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA 42 1.3
29emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chr... 42 1.3
30emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 42 1.3
31gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, co... 42 1.3
32emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in l... 42 1.3
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
34gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.3
35dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 1.3
36dbj|BS000117.1| Pan troglodytes chromosome 22 clone:RP43-027E03,... 42 1.3
37dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synth... 42 1.3
38dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
39dbj|AP001726.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.3
40dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.3
41dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 42 1.3
42gb|AC150651.3| Bos taurus BAC CH240-451E16 (Children's Hospital... 40 5.2
43gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome... 40 5.2
44gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete se... 40 5.2
45emb|CR318625.10| Zebrafish DNA sequence from clone DKEY-119A7 in... 40 5.2
46emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 5.2
47ref|XM_733178.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.2
48ref|XM_739283.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.2
49gb|AC121238.17| Medicago truncatula clone mth2-34p9, complete se... 40 5.2
50emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in... 40 5.2
51emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chro... 40 5.2
52emb|BX855620.10| Zebrafish DNA sequence from clone DKEY-9M4 in l... 40 5.2
53emb|CR382398.1| Plasmodium falciparum chromosome 6, complete seq... 40 5.2
54emb|BX950184.7| Zebrafish DNA sequence from clone CH211-103O12 i... 40 5.2
55emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 i... 40 5.2
56emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 i... 40 5.2
57gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complet... 40 5.2
58gb|AF465311.1| Dictyostelium discoideum ABC transporter ABCA.9 (... 40 5.2
59emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 i... 40 5.2
60gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosom... 40 5.2
61dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DN... 40 5.2
62dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.2
63gb|AC007934.7|AC007934 Homo sapiens, clone RP11-29A1, complete s... 40 5.2
64emb|BX901933.15| Zebrafish DNA sequence from clone DKEY-114H6 in... 40 5.2
65emb|AL929231.3| Zebrafish DNA sequence from clone BUSM1-46P4, co... 40 5.2
66emb|AL928816.2| Zebrafish DNA sequence from clone BUSM1-265N4, c... 40 5.2
67emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in... 40 5.2
68gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone... 40 5.2
69emb|BX927330.9| Zebrafish DNA sequence from clone DKEY-43B14 in ... 40 5.2
70gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 fr... 40 5.2
71gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 m... 40 5.2
72emb|BX088567.6| Mouse DNA sequence from clone RP23-21L20 on chro... 40 5.2 
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene)
          Length = 915

 Score =  438 bits (221), Expect = e-120
 Identities = 251/261 (96%)
 Strand = Plus / Minus

                                                                       
Query: 125 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 915 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtatcggtccca 856

                                                                       
Query: 185 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagac 244
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 855 gagcatgatgccgccgtagttgtccttcttctgcgccaccggcgcgacgccgtagtagac 796

                                                                       
Query: 245 gttcttggggtgtacccactggtaggacttgtcgtccgccgtgagcccgacgtagaaccg 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 795 gttcttggggtgtacccactggtgggacttgtcgtccgccgtgagcccgacgtagaaccg 736

                                                                       
Query: 305 ggtggcagggtacgccgccgtccactcgttccacgagccctcccacccaaagttctggtt 364
           |||||| ||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 735 ggtggccgggtacgccgccgtccacttgtcccacgagccctcccacccaaggttctggtt 676

                                
Query: 365 gcacccattgtcgctctcgta 385
           |||||  ||||||||||||||
Sbjct: 675 gcaccacttgtcgctctcgta 655
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>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III,
           complete cds
          Length = 934

 Score =  242 bits (122), Expect = 7e-61
 Identities = 224/258 (86%)
 Strand = Plus / Minus

                                                                       
Query: 125 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 184
           ||||||||||||||||||  |||| ||||||| | |||||||||||||||| ||||||||
Sbjct: 932 tcaggcgtagtacttgatgtagctactgtagtcgctctgcttgtcgaagtatcggtccca 873

                                                                       
Query: 185 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagac 244
           ||||||||  ||||||||||||||||||||||||  |||||||| || || |||||||||
Sbjct: 872 gagcatgaccccgccgtagttgtccttcttctgcaccaccggcgtgatgccgtagtagac 813

                                                                       
Query: 245 gttcttggggtgtacccactggtaggacttgtcgtccgccgtgagcccgacgtagaaccg 304
           |||||||||||||| ||||||||| ||||| ||||| || |||||||||| | |||||||
Sbjct: 812 gttcttggggtgtatccactggtacgacttctcgtcggcggtgagcccgatgaagaaccg 753

                                                                       
Query: 305 ggtggcagggtacgccgccgtccactcgttccacgagccctcccacccaaagttctggtt 364
           |||||| ||||||||||||||||||  || |||||   |||||||| |   || ||||||
Sbjct: 752 ggtggccgggtacgccgccgtccacctgtcccacgcctcctcccacgccccgtactggtt 693

                             
Query: 365 gcacccattgtcgctctc 382
           |||| | |||||||||||
Sbjct: 692 gcacgccttgtcgctctc 675
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                            
Query: 137      cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 196
                ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 14484656 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 14484715

                                                                            
Query: 197      gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagacgttcttggggtg 256
                |||||||||||||  ||||||||    ||| ||||||  |||||||||||||||||||||
Sbjct: 14484716 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 14484775

                       
Query: 257      tacccac 263
                 ||||||
Sbjct: 14484776 cacccac 14484782



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 294      acgtagaaccgggtggcagggtacgccgccgtc 326
                ||||||||||| || || |||||||||||||||
Sbjct: 14484813 acgtagaaccgtgtcgccgggtacgccgccgtc 14484845
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>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                         
Query: 137   cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 196
             ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 77830 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 77889

                                                                         
Query: 197   gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagacgttcttggggtg 256
             |||||||||||||  ||||||||    ||| ||||||  |||||||||||||||||||||
Sbjct: 77890 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 77949

                    
Query: 257   tacccac 263
              ||||||
Sbjct: 77950 cacccac 77956



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 294   acgtagaaccgggtggcagggtacgccgccgtc 326
             ||||||||||| || || |||||||||||||||
Sbjct: 77987 acgtagaaccgtgtcgccgggtacgccgccgtc 78019
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>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0022E16 map C481S, complete sequence
          Length = 179668

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 158   ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
             ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 164   cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
             ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 166   tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
             |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 158      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 164      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 166      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148
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>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full
           insert sequence
          Length = 1176

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
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>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full
           insert sequence
          Length = 1234

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 158      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 164      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 166      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026
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>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
           cds
          Length = 1220

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
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>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C60571
          Length = 1220

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
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>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C11701
          Length = 1171

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
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>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C12269
          Length = 1214

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
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>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C3540
          Length = 1229

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
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>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds,clone:C10295
          Length = 1199

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
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>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase
           homologue (OsChib3H-a)H-, complete cds, clone:C60129
          Length = 1187

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
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>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full
           insert sequence
          Length = 1162

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 164 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
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>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full
           insert sequence
          Length = 1193

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 164 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
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>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full
           insert sequence
          Length = 1153

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 164 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
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>ref|NM_193094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 219
           |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 857

                   
Query: 220 acaccggc 227
           || |||||
Sbjct: 856 actccggc 849
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 160      tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 219
                |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 26162418

                        
Query: 220      acaccggc 227
                || |||||
Sbjct: 26162417 actccggc 26162410
to top
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full
           insert sequence
          Length = 1165

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 219
           |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 905

                   
Query: 220 acaccggc 227
           || |||||
Sbjct: 904 actccggc 897
to top
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 160   tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 219
             |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 54276

                     
Query: 220   acaccggc 227
             || |||||
Sbjct: 54275 actccggc 54268
to top
>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative
           endoplasmic reticulum protein, with at least 5
           transmembrane domains, of eukaryotic origin (56.3 kD)
           (4P439) (LOC592817), mRNA
          Length = 1917

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 147 ctgctgtagttggtctgcttgt 168
           ||||||||||||||||||||||
Sbjct: 86  ctgctgtagttggtctgcttgt 107
to top
>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258,
           mercuric chloride-treated, leaves, mRNA Partial, 945 nt]
          Length = 945

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 177 cggtcccagagcatgatgccgccgtagttg 206
           |||||||| | |||||||||||||||||||
Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
to top
>gb|AY107125.1| Zea mays PCO125117 mRNA sequence
          Length = 1252

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 177 cggtcccagagcatgatgccgccgtagttg 206
           |||||||| | |||||||||||||||||||
Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 18      attattatttttatttatcca 38
               |||||||||||||||||||||
Sbjct: 9296566 attattatttttatttatcca 9296586
to top
>emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 20   tattatttttatttatccaag 40
            |||||||||||||||||||||
Sbjct: 1059 tattatttttatttatccaag 1079
to top
>emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chromosome 6, complete
             sequence
          Length = 200337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    attattatttttatttatcca 38
             |||||||||||||||||||||
Sbjct: 75724 attattatttttatttatcca 75704
to top
>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    attattatttttatttatcca 38
             |||||||||||||||||||||
Sbjct: 55388 attattatttttatttatcca 55368
to top
>gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, complete sequence
          Length = 141478

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     caattattatttttatttatc 36
              |||||||||||||||||||||
Sbjct: 106374 caattattatttttatttatc 106394
to top
>emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in linkage group 2, complete
              sequence
          Length = 264534

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     attattatttttatttatccaagta 42
              |||||||||||||||||| ||||||
Sbjct: 242608 attattatttttatttattcaagta 242584
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 18      attattatttttatttatcca 38
               |||||||||||||||||||||
Sbjct: 9294399 attattatttttatttatcca 9294419
to top
>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0014A21, from chromosome 3, complete sequence
          Length = 134014

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    attattatttttatttatcca 38
             |||||||||||||||||||||
Sbjct: 59687 attattatttttatttatcca 59667
to top
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ttcaattattatttttattta 34
              |||||||||||||||||||||
Sbjct: 956438 ttcaattattatttttattta 956458
to top
>dbj|BS000117.1| Pan troglodytes chromosome 22 clone:RP43-027E03, map 22, complete
             sequences
          Length = 155641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tcaattattatttttatttat 35
             |||||||||||||||||||||
Sbjct: 82472 tcaattattatttttatttat 82492
to top
>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     tcaattattatttttatttat 35
              |||||||||||||||||||||
Sbjct: 217230 tcaattattatttttatttat 217210
to top
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full
           insert sequence
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 166 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
to top
>dbj|AP001726.1| Homo sapiens genomic DNA, chromosome 21q, section 70/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     tcaattattatttttatttat 35
              |||||||||||||||||||||
Sbjct: 335682 tcaattattatttttatttat 335702
to top
>dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1574E2, complete
              sequence
          Length = 219049

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     caattattatttttatttatc 36
              |||||||||||||||||||||
Sbjct: 147526 caattattatttttatttatc 147506
to top
>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6,
             CBR1-HLCS region
          Length = 39159

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tcaattattatttttatttat 35
             |||||||||||||||||||||
Sbjct: 21346 tcaattattatttttatttat 21366
to top
>gb|AC150651.3| Bos taurus  BAC CH240-451E16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 174648

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    attattatttttatttatccaagt 41
             |||||||||||||||||| |||||
Sbjct: 12410 attattatttttatttattcaagt 12387
to top
>gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome 12, complete sequence
          Length = 190196

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttcaattattatttttattt 33
             ||||||||||||||||||||
Sbjct: 37564 ttcaattattatttttattt 37545
to top
>gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete sequence
          Length = 73786

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aattattatttttatttatc 36
             ||||||||||||||||||||
Sbjct: 35552 aattattatttttatttatc 35533
to top
>emb|CR318625.10| Zebrafish DNA sequence from clone DKEY-119A7 in linkage group 17,
              complete sequence
          Length = 142057

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 125089 ttcaattattatttttattt 125070
to top
>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
             complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttattatttttatttatcca 38
             ||||||||||||||||||||
Sbjct: 12184 ttattatttttatttatcca 12165
to top
>ref|XM_733178.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000260.02.0)
           partial mRNA
          Length = 234

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  aattattatttttatttatc 36
           ||||||||||||||||||||
Sbjct: 232 aattattatttttatttatc 213
to top
>ref|XM_739283.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000521.03.0)
           partial mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 12  tgttcaattattatttttatttat 35
           |||| |||||||||||||||||||
Sbjct: 156 tgttaaattattatttttatttat 133
to top
>gb|AC121238.17| Medicago truncatula clone mth2-34p9, complete sequence
          Length = 104878

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    attattatttttatttatcc 37
             ||||||||||||||||||||
Sbjct: 98119 attattatttttatttatcc 98138
to top
>emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in linkage group 1,
              complete sequence
          Length = 163635

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 118265 ttcaattattatttttattt 118284
to top
>emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chromosome Xp11.22-11.3
              Contains a nicolin 1 (NICN1) pseudogene, a novel gene, the
              5'end of the ZNF157 gene for zinc finger protein 157
              (HZF22) and a UBX domain containing 2 (UBXD2) pseudogene,
              complete sequence
          Length = 152659

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     caattattatttttatttat 35
              ||||||||||||||||||||
Sbjct: 121322 caattattatttttatttat 121341
to top
>emb|BX855620.10| Zebrafish DNA sequence from clone DKEY-9M4 in linkage group 15,
             complete sequence
          Length = 33169

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aattattatttttatttatc 36
             ||||||||||||||||||||
Sbjct: 19986 aattattatttttatttatc 19967
to top
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 132191 ttcaattattatttttattt 132210
to top
>emb|BX950184.7| Zebrafish DNA sequence from clone CH211-103O12 in linkage group 12,
             complete sequence
          Length = 150475

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 97242 tgttcaattattatttttat 97223
to top
>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7
             Contains three CpG islands, complete sequence
          Length = 110786

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    caatacatcagaatcaaatc 89
             ||||||||||||||||||||
Sbjct: 43424 caatacatcagaatcaaatc 43405
to top
>emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 in linkage group 10,
             complete sequence
          Length = 162115

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tcaattattatttttattta 34
             ||||||||||||||||||||
Sbjct: 25547 tcaattattatttttattta 25566
to top
>gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complete sequence
          Length = 195930

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aattattatttttatttatc 36
              ||||||||||||||||||||
Sbjct: 126479 aattattatttttatttatc 126460
to top
>gb|AF465311.1| Dictyostelium discoideum ABC transporter ABCA.9 (abca9) gene, partial
            cds
          Length = 4234

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   ttcaattattatttttattt 33
            ||||||||||||||||||||
Sbjct: 4043 ttcaattattatttttattt 4024
to top
>emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 in linkage group 1,
             complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 15731 tgttcaattattatttttat 15750
to top
>gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosome 14, complete
             sequence
          Length = 182996

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 17    aattattatttttatttatccaagtaca 44
             |||||||||||||| || ||||||||||
Sbjct: 98061 aattattatttttaattttccaagtaca 98088
to top
>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence
          Length = 94287

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 185   gagcatgatgccgccgtagttgtccttc 212
             ||||||||||| |||| |||||||||||
Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     ttctgcgacaccggcgcgac 232
               ||||||||||||||||||||
Sbjct: 5735197 ttctgcgacaccggcgcgac 5735178
to top
>gb|AC007934.7|AC007934 Homo sapiens, clone RP11-29A1, complete sequence
          Length = 157625

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     ccaactgttcaattattattttta 30
             ||||||||| ||||||||||||||
Sbjct: 93027 ccaactgttaaattattattttta 93004
to top
>emb|BX901933.15| Zebrafish DNA sequence from clone DKEY-114H6 in linkage group 22,
             complete sequence
          Length = 42656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    ttattatttttatttatccaagta 42
             ||||||||||| ||||||||||||
Sbjct: 17692 ttattatttttttttatccaagta 17715
to top
>emb|AL929231.3| Zebrafish DNA sequence from clone BUSM1-46P4, complete sequence
          Length = 85305

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 73280 tgttcaattattatttttat 73299
to top
>emb|AL928816.2| Zebrafish DNA sequence from clone BUSM1-265N4, complete sequence
          Length = 98918

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 33614 tgttcaattattatttttat 33633
to top
>emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in linkage group 1, complete
              sequence
          Length = 167207

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 137407 ttcaattattatttttattt 137426
to top
>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete
             sequence
          Length = 218889

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ttcaattattatttttattt 33
             ||||||||||||||||||||
Sbjct: 18723 ttcaattattatttttattt 18742
to top
>emb|BX927330.9| Zebrafish DNA sequence from clone DKEY-43B14 in linkage group 2,
             complete sequence
          Length = 203149

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aattattatttttatttatc 36
             ||||||||||||||||||||
Sbjct: 33340 aattattatttttatttatc 33321
to top
>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown,
             complete sequence
          Length = 128941

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    attatttttatttatccaagtaca 44
             ||||| ||||||||||||||||||
Sbjct: 66721 attatctttatttatccaagtaca 66744
to top
>gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 map 4q25, complete sequence
          Length = 154252

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttcaattattatttttattt 33
             ||||||||||||||||||||
Sbjct: 20307 ttcaattattatttttattt 20288
to top
>emb|BX088567.6| Mouse DNA sequence from clone RP23-21L20 on chromosome X, complete
             sequence
          Length = 150122

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttattatttttatttatcca 38
             ||||||||||||||||||||
Sbjct: 84264 ttattatttttatttatcca 84245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,661,684
Number of Sequences: 3902068
Number of extensions: 3661684
Number of successful extensions: 135290
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134840
Number of HSP's gapped (non-prelim): 447
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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