>TSAT_RICTS (P37918) 56 kDa type-specific antigen precursor (TSA) (56 kDa scrub|
           typhus antigen) (STA56) (TST56)
          Length = 529

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +3

Query: 294 IAVGSRAAPGVVHLAHGKREVEQDQRPHAGQRGEEED-----DPPGIQPRRRTPPEPPGL 458
           IA G RA  GV++LA+ K EVE      +G+ G + D     D P  Q  + TPP+P  +
Sbjct: 83  IAPGFRAELGVMYLANVKAEVE------SGKTGSDADIRSGADSPMPQRYKLTPPQPTIM 136

Query: 459 P 461
           P
Sbjct: 137 P 137

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 303  GSRAAPGVVHLAHGKREV----EQDQRPHAGQRGEE-EDDPPGIQPRRRTPPEPPG 455
            G    PG+   A G  E     E+ +R   G+RGE+  D PPG+ P    PP PPG
Sbjct: 2037 GKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGL-PGTPGPPGPPG 2091

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 345  KREVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPP 452
            +RE+EQ QR  + ++ +++ D    Q RR  P  PP
Sbjct: 1723 QREIEQQQRKSSSKKSKKDKDELRAQRRRERPKTPP 1758

>SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopeptide|
            repeat-containing, SH2-binding phosphoprotein of 150 kDa)
            (TPR-containing, SH2-binding phosphoprotein of 150 kDa)
            (p150TSP)
          Length = 1173

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 342  GKREVEQDQRPHAGQRG-EEEDDPPGIQPRRRTPP 443
            G+R+ ++ +RP  G+ G EEE+   G +P++R PP
Sbjct: 953  GERKKKRRRRPPKGEEGSEEEETENGPKPKKRRPP 987

>COLQ_RAT (O35167) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit) (Acetylcholinesterase-associated
           collagen)
          Length = 458

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +3

Query: 342 GKREVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPPGLPS 464
           GKR  +Q Q+  +G  G      P  QP R+ PP PPG PS
Sbjct: 233 GKRG-KQGQKGDSGIMGPPGKPGPSGQPGRQGPPGPPGPPS 272

>RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)|
          Length = 809

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +1

Query: 169 FFCAFSY----HHTI-FHPNSGNISPRHNLYRSHVENPVMTLVFHRASLSA 306
           F+C F Y    ++TI  +PNSG I+P H  Y   +   V   VFHR  L A
Sbjct: 515 FYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDA 564

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 357 EQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPPGLP 461
           E D+    G  G+ +D PP   P R  PP PP  P
Sbjct: 255 EGDRGTAGGGEGDRDDPPPPSPPPRPPPPLPPPPP 289

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
 Frame = +3

Query: 330 HLAHGKREVEQDQR-------PHAGQRGEEEDD 407
           H  HG+ E E D         PH G RG EEDD
Sbjct: 454 HRGHGEEEDEDDDDEGEHHHVPHRGHRGHEEDD 486

>Y1435_DEIRA (Q9RUF1) Hypothetical UPF0052 protein DR1435|
          Length = 467

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 449 RLGRRPAPWLDP----RRVVFLFATLSSVGTLILLYFT 348
           R  RR   WL+P    +R +FLF   + VG +  L+FT
Sbjct: 31  RRARRARMWLEPGLGVKRWIFLFVVCTFVGAVAFLHFT 68

>CP9B1_DROME (Q9V4I0) Cytochrome P450 9b1 (EC 1.14.-.-) (CYPIXB1)|
          Length = 505

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
 Frame = +1

Query: 106 HHKLLHQ--------DINRPNLLSAVCYVFFCAFSYHHTIFHPNSGNISPRHNLYR-SHV 258
           HHKL+           IN P L+  +C   F  F  H T+  PN   ++   N+ R  H 
Sbjct: 68  HHKLVGLFNLRTPMIQINDPQLIKKICVKDFDHFPNHQTLNIPNERLVNDMLNVMRDQHW 127

Query: 259 EN--PVMTLVFHRASL 300
            N   V+T VF  A +
Sbjct: 128 RNMRSVLTPVFTSAKM 143

>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = +3

Query: 264 PCDDAGVSPCIAVGSRAAPGVVHLAHGK--REVEQDQRPHAGQRGE------EEDDPPGI 419
           P  D+G   C   G + APG    A GK  R  +       G  G+      EE  PP  
Sbjct: 93  PNFDSGCEGCCQPGPQGAPG----APGKPGRPGKPGAPGFPGNPGKAPQKPCEEITPPPC 148

Query: 420 QPRRRTPPEPPGLP 461
           +P  + PP  PGLP
Sbjct: 149 KPCPQGPPGAPGLP 162

>GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi|
           reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi
           peripheral membrane protein p65) (Golgi phosphoprotein
           5) (GOLPH5)
          Length = 439

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 285 SPCIAVGSRAAPGVVHLAHGKREVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPP 452
           SP +  GSR +  +  L        +D  P  G       DP G+     TP +PP
Sbjct: 240 SPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPDGLPHFMETPLQPP 295

>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
            2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
            kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 408  PPGIQPRRRTPPEPPGLP 461
            PP I P  + PPEPPG P
Sbjct: 1256 PPHILPPEKRPPEPPGPP 1273

>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 633

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 357 EQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPPGLPS 464
           E+D+  H+G  G+E    P  QP+ +T P     PS
Sbjct: 411 EEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPS 446

>MRH4_NEUCR (Q7SBR1) ATP-dependent RNA helicase mrh-4, mitochondrial precursor|
           (EC 3.6.1.-)
          Length = 625

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 402 LPLRHAVQRGDADPALLHAFHEQDGQRRERHG 307
           +P  +A+++GDAD  L+ +++E+    +ER G
Sbjct: 220 VPAVNAIKKGDADDELVASYNERLAAEKERRG 251

>EST1_MOUSE (Q8VCC2) Liver carboxylesterase 1 precursor (EC 3.1.1.1) (Acyl|
           coenzyme A:cholesterol acyltransferase) (ES-x)
          Length = 565

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 282 VSPCIAVGSRAAPGVVHLAHGK-----REVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPE 446
           ++ C+++G  + P VVH  HGK       +E   +P A   G     PP +   R  PPE
Sbjct: 11  LTACLSLGHPSLPPVVHTVHGKVLGKYVTLEGFSQPVAVFLGVPFAKPP-LGSLRFAPPE 69

Query: 447 P 449
           P
Sbjct: 70  P 70

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 303  GSRAAPGVVHLAHGKREVEQDQRPHAGQRGEEEDDPPGIQ--PRRRTPPEPPGLPSW 467
            G    PG + L          +    G+RG     PPG+   P    PP PPGLP +
Sbjct: 849  GPNGLPGAIGLPGDPGPASYGKNGRDGERG-----PPGLAGIPGVPGPPGPPGLPGF 900

>OPSD_LOLFO (P24603) Rhodopsin|
          Length = 452

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +3

Query: 270 DDAGVSPCIAVGSRAAPGVVHLAHGKREVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPEP 449
           DD      I  G ++       A  K  +   Q+  A Q+ +    P G  P+   PP P
Sbjct: 346 DDKDAEAEIPAGEQSGGETADAAQMKEMMAMMQKMQAQQQQQPAYPPQGYPPQGYPPPPP 405

Query: 450 PGLP 461
            G P
Sbjct: 406 QGYP 409

>COLQ_MOUSE (O35348) Acetylcholinesterase collagenic tail peptide (AChE Q|
           subunit) (Acetylcholinesterase-associated collagen)
           (Fragment)
          Length = 236

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 342 GKREVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPPGLPS 464
           GKR  +Q Q+  +G  G      P  QP R+ PP  PG PS
Sbjct: 196 GKRG-KQGQKGDSGIMGPHGKPGPSGQPGRQGPPGAPGPPS 235

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +3

Query: 273  DAGVSPCIAVGSRAAPGVVHLAHGKREVEQDQRPHAGQRGEEEDDPPGIQPRRRTP---P 443
            +AG  P   VG             + E     RP + +RG   +DP G+ PRR  P   P
Sbjct: 901  EAGRKPARGVGGGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEDP-GVPPRRAGPIKKP 959

Query: 444  EPP 452
             PP
Sbjct: 960  PPP 962

>Y483_CHLPN (Q9Z868) Hypothetical protein CPn_0483/CP0271/CPj0483/CpB0503|
          Length = 1043

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 366 QRPHAGQRGEEEDDPPGIQPRRRTPPEPPGLPS 464
           Q P  G+  + +   PG  P   TPP PP  PS
Sbjct: 96  QPPKDGEDKKPDVPKPGTPPPEDTPPPPPKAPS 128

>RPTN_MOUSE (P97347) Repetin|
          Length = 1130

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 HGKREVEQDQRPHAGQRGEEEDDP 410
           H  ++  QDQ PH GQ+G ++  P
Sbjct: 390 HQGQKGRQDQSPHLGQKGRQDQSP 413



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 HGKREVEQDQRPHAGQRGEEEDDP 410
           H  ++  QDQ PH GQ+G ++  P
Sbjct: 378 HRGQKGRQDQSPHQGQKGRQDQSP 401



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 HGKREVEQDQRPHAGQRGEEEDDP 410
           H  ++  QDQ PH GQ+G ++  P
Sbjct: 366 HQGQKGRQDQSPHRGQKGRQDQSP 389



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 HGKREVEQDQRPHAGQRGEEEDDP 410
           H  ++  QDQ PH GQ+G ++  P
Sbjct: 354 HRGQKGRQDQSPHQGQKGRQDQSP 377

>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 342 GKREVEQDQRPHAGQRGEEEDDPPGIQPRRRTPPEPP 452
           G+RE  Q+Q+PH  QR  ++      +P+ + P   P
Sbjct: 231 GQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQP 267

>CT141_HUMAN (Q9NUB4) Protein C20orf141|
          Length = 165

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 319 PALSILLMESVK*SRISVPTLDSVAKRKTTLRGSSHGAGRRPSR 450
           PAL +LL+  +    +  P   ++ +RK   RG S GAG  P +
Sbjct: 70  PALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQ 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,831,343
Number of Sequences: 219361
Number of extensions: 1328113
Number of successful extensions: 5769
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5713
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)