ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 139 bits (70), Expect = 9e-30 Identities = 195/236 (82%), Gaps = 3/236 (1%) Strand = Plus / Minus Query: 212 tggtggttggagctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagc 271 |||||||||||||| |||||||||||||||||| || ||||| |||| |||| ||||| Sbjct: 24728206 tggtggttggagctgtggaacaccacgcgcgtccggttggcgaccgccgcgaacacgagc 24728147 Query: 272 ttggcgcacttgtgcccgccggtgccgcgggagtggtacgtgaccctccgcttctcccgc 331 | ||||| || ||||||||| ||||| || || | ||||| ||| || || || ||||| Sbjct: 24728146 tcggcgcgctcgtgcccgccagtgccccgcgactcgtacgacaccttcagcgtcgcccgc 24728087 Query: 332 gcggcgtacacgtccacgcccagtgacccgacgcacccgttgcgcgcatccccgacgctg 391 || |||||| |||||||| | || ||||||| ||||||||||| || ||||||||| | Sbjct: 24728086 gccgcgtacgcgtccacggcaagggacccgatgcacccgttgccggcgtccccgacggag 24728027 Query: 392 aacgagagcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgc 447 ||||| ||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 24728026 aacgacagcgtgtaccgccgcccgggcacggt---cgccacctcctgcaccagcgc 24727974 Score = 91.7 bits (46), Expect = 2e-15 Identities = 75/84 (89%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 364 gcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacggt 423 ||||||||||| ||| ||||||||| |||||| |||||||| ||||||||||||||||| Sbjct: 24723400 gcacccgttgcccgcgtccccgacggagaacgacagcctgtacgaccgcccgggcacggt 24723341 Query: 424 gcccgccacctcctgcaccagcgc 447 ||||||||||||||||||||| Sbjct: 24723340 ---cgccacctcctgcaccagcgc 24723320 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 209 gtgtggtggttggagctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcg 268 ||||||| |||| ||||||||||||||||||||||| || |||| |||| ||||||| Sbjct: 24723555 gtgtggtagttgaagctctggaacaccacgcgcgtcaggttcgcgaccgccgcgaactcg 24723496 Query: 269 agcttggcgcacttgtgcccgccggtgcc 297 |||| ||||| |||||||||||| ||||| Sbjct: 24723495 agctgggcgcgcttgtgcccgcccgtgcc 24723467 Score = 60.0 bits (30), Expect = 7e-06 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 356 gacccgacgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccg 415 ||||| |||||||||| || || ||||||||| |||| |||| ||| ||||||||| Sbjct: 24721208 gaccccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccg 24721149 Query: 416 ggcacggtgcccgccacctcctgcaccagcgccacctcca 455 |||||||||| ||||||||||||||||||| |||||| Sbjct: 24721148 ggcacggtgc---acacctcctgcaccagcgccgcctcca 24721112 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgc 425 |||||||| ||||||||||||||||||| Sbjct: 24717474 agcctgtacgaccgcccgggcacggtgc 24717447
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 139 bits (70), Expect = 9e-30 Identities = 195/236 (82%), Gaps = 3/236 (1%) Strand = Plus / Minus Query: 212 tggtggttggagctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagc 271 |||||||||||||| |||||||||||||||||| || ||||| |||| |||| ||||| Sbjct: 117729 tggtggttggagctgtggaacaccacgcgcgtccggttggcgaccgccgcgaacacgagc 117670 Query: 272 ttggcgcacttgtgcccgccggtgccgcgggagtggtacgtgaccctccgcttctcccgc 331 | ||||| || ||||||||| ||||| || || | ||||| ||| || || || ||||| Sbjct: 117669 tcggcgcgctcgtgcccgccagtgccccgcgactcgtacgacaccttcagcgtcgcccgc 117610 Query: 332 gcggcgtacacgtccacgcccagtgacccgacgcacccgttgcgcgcatccccgacgctg 391 || |||||| |||||||| | || ||||||| ||||||||||| || ||||||||| | Sbjct: 117609 gccgcgtacgcgtccacggcaagggacccgatgcacccgttgccggcgtccccgacggag 117550 Query: 392 aacgagagcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgc 447 ||||| ||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 117549 aacgacagcgtgtaccgccgcccgggcacggt---cgccacctcctgcaccagcgc 117497 Score = 91.7 bits (46), Expect = 2e-15 Identities = 75/84 (89%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 364 gcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacggt 423 ||||||||||| ||| ||||||||| |||||| |||||||| ||||||||||||||||| Sbjct: 112923 gcacccgttgcccgcgtccccgacggagaacgacagcctgtacgaccgcccgggcacggt 112864 Query: 424 gcccgccacctcctgcaccagcgc 447 ||||||||||||||||||||| Sbjct: 112863 ---cgccacctcctgcaccagcgc 112843 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 209 gtgtggtggttggagctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcg 268 ||||||| |||| ||||||||||||||||||||||| || |||| |||| ||||||| Sbjct: 113078 gtgtggtagttgaagctctggaacaccacgcgcgtcaggttcgcgaccgccgcgaactcg 113019 Query: 269 agcttggcgcacttgtgcccgccggtgcc 297 |||| ||||| |||||||||||| ||||| Sbjct: 113018 agctgggcgcgcttgtgcccgcccgtgcc 112990 Score = 60.0 bits (30), Expect = 7e-06 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 356 gacccgacgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccg 415 ||||| |||||||||| || || ||||||||| |||| |||| ||| ||||||||| Sbjct: 110731 gaccccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccg 110672 Query: 416 ggcacggtgcccgccacctcctgcaccagcgccacctcca 455 |||||||||| ||||||||||||||||||| |||||| Sbjct: 110671 ggcacggtgc---acacctcctgcaccagcgccgcctcca 110635 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgc 425 |||||||| ||||||||||||||||||| Sbjct: 106997 agcctgtacgaccgcccgggcacggtgc 106970
>ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 91.7 bits (46), Expect = 2e-15 Identities = 75/84 (89%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 364 gcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacggt 423 ||||||||||| ||| ||||||||| |||||| |||||||| ||||||||||||||||| Sbjct: 882 gcacccgttgcccgcgtccccgacggagaacgacagcctgtacgaccgcccgggcacggt 823 Query: 424 gcccgccacctcctgcaccagcgc 447 ||||||||||||||||||||| Sbjct: 822 ---cgccacctcctgcaccagcgc 802 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 209 gtgtggtggttggagctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcg 268 ||||||| |||| ||||||||||||||||||||||| || |||| |||| ||||||| Sbjct: 1037 gtgtggtagttgaagctctggaacaccacgcgcgtcaggttcgcgaccgccgcgaactcg 978 Query: 269 agcttggcgcacttgtgcccgccggtgcc 297 |||| ||||| |||||||||||| ||||| Sbjct: 977 agctgggcgcgcttgtgcccgcccgtgcc 949
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 60.0 bits (30), Expect = 7e-06 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 356 gacccgacgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccg 415 ||||| |||||||||| || || ||||||||| |||| |||| ||| ||||||||| Sbjct: 884 gaccccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccg 825 Query: 416 ggcacggtgcccgccacctcctgcaccagcgccacctcca 455 |||||||||| ||||||||||||||||||| |||||| Sbjct: 824 ggcacggtgc---acacctcctgcaccagcgccgcctcca 788
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 60.0 bits (30), Expect = 7e-06 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 356 gacccgacgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccg 415 ||||| |||||||||| || || ||||||||| |||| |||| ||| ||||||||| Sbjct: 1005 gaccccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccg 946 Query: 416 ggcacggtgcccgccacctcctgcaccagcgccacctcca 455 |||||||||| ||||||||||||||||||| |||||| Sbjct: 945 ggcacggtgc---acacctcctgcaccagcgccgcctcca 909
>ref|NM_187540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 50.1 bits (25), Expect = 0.006 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||||||||||||||||||| |||||||||||||| |||| Sbjct: 551 agcctgtacgaccgcccgggcacggtgc---tcacctcctgcaccatcgcc 504
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.006 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Plus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||||||||||||||||||| |||||||||||||| |||| Sbjct: 12002193 agcctgtacgaccgcccgggcacggtgc---tcacctcctgcaccatcgcc 12002240
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.006 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Plus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||||||||||||||||||| |||||||||||||| |||| Sbjct: 11998956 agcctgtacgaccgcccgggcacggtgc---tcacctcctgcaccatcgcc 11999003
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 50.1 bits (25), Expect = 0.006 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Plus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||||||||||||||||||| |||||||||||||| |||| Sbjct: 22773 agcctgtacgaccgcccgggcacggtgc---tcacctcctgcaccatcgcc 22820
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 50.1 bits (25), Expect = 0.006 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Plus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||||||||||||||||||| |||||||||||||| |||| Sbjct: 103455 agcctgtacgaccgcccgggcacggtgc---tcacctcctgcaccatcgcc 103502
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgc 425 |||||||| ||||||||||||||||||| Sbjct: 848 agcctgtacgaccgcccgggcacggtgc 821
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgc 425 |||||||| ||||||||||||||||||| Sbjct: 1252 agcctgtacgaccgcccgggcacggtgc 1225
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgc 425 |||||||| ||||||||||||||||||| Sbjct: 1082 agcctgtacgaccgcccgggcacggtgc 1055
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 1014 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 955 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 954 gtacccgccggtgcc 940 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 874 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 815 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 814 tgcgc---acctcctgcaccagcgcc 792
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 24179533 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 24179474 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 24179473 gtacccgccggtgcc 24179459 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 24179393 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 24179334 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 24179333 tgcgc---acctcctgcaccagcgcc 24179311
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 155355 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 155296 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 155295 gtacccgccggtgcc 155281 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 155215 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 155156 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 155155 tgcgc---acctcctgcaccagcgcc 155133
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 4097 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 4038 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 4037 gtacccgccggtgcc 4023 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 3957 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 3898 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 3897 tgcgc---acctcctgcaccagcgcc 3875
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 1002 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 943 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 942 gtacccgccggtgcc 928 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 862 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 803 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 802 tgcgc---acctcctgcaccagcgcc 780
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 1131 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 1072 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 1071 gtacccgccggtgcc 1057 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 991 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 932 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 931 tgcgc---acctcctgcaccagcgcc 909
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 223 gctctggaacaccacgcgcgtcttgtcggcgatggccgtgaactcgagcttggcgcactt 282 |||||||||||| ||||| || || ||||||||| | ||||||||| ||||| ||| Sbjct: 1127 gctctggaacacgacgcgggtgcggttggcgatggcggcgaactcgaggacggcgcgctt 1068 Query: 283 gtgcccgccggtgcc 297 || |||||||||||| Sbjct: 1067 gtacccgccggtgcc 1053 Score = 40.1 bits (20), Expect = 6.2 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 363 cgcacccgttgcgcgcatccccgacgctgaacgagagcctgtaggaccgcccgggcacgg 422 ||||||||| |||||| || || ||| |||||| || | ||| | || ||||||||||| Sbjct: 987 cgcacccgtcgcgcgcgtcgcccacggcgaacgacaggcggtacgtccacccgggcacgg 928 Query: 423 tgcccgccacctcctgcaccagcgcc 448 ||| | |||||||||||||||||| Sbjct: 927 tgcgc---acctcctgcaccagcgcc 905
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 433 ctcctgcaccagcgccacctcc 454 |||||||||||||||||||||| Sbjct: 3764735 ctcctgcaccagcgccacctcc 3764756
>gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete sequence Length = 103966 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 atcatccttcaaattaaggtactcta 39 |||||||||||||| ||||||||||| Sbjct: 76029 atcatccttcaaataaaggtactcta 76004
>gb|AC126014.6| Medicago truncatula clone mth2-18j5, complete sequence Length = 113200 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 atcatccttcaaattaaggtactcta 39 |||||||||||||| ||||||||||| Sbjct: 23609 atcatccttcaaataaaggtactcta 23634
>dbj|AB010493.1| Matsuebacter chitosanotabidus choA gene for chitosanase, complete cds Length = 2552 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 gcgtcttgtcggcgatggccgtgaac 265 |||||||||||||||||| ||||||| Sbjct: 2337 gcgtcttgtcggcgatggtcgtgaac 2312
>ref|NM_186238.1| Oryza sativa (japonica cultivar-group), mRNA Length = 921 Score = 42.1 bits (21), Expect = 1.6 Identities = 44/51 (86%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||| ||||||||||||||| |||||||||||||| |||| Sbjct: 185 agcctgtacgacagcccgggcacggtgc---tcacctcctgcaccatcgcc 138
>ref|XM_882206.1| PREDICTED: Bos taurus similar to Alpha-actinin 3 (Alpha actinin skeletal muscle isoform 3) (F-actin cross linking protein), transcript variant 9 (LOC539375), mRNA Length = 2898 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 accgcccgggcacggtgcccg 428 ||||||||||||||||||||| Sbjct: 2418 accgcccgggcacggtgcccg 2438
>gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionophore nanchangmycin biosynthetic gene cluster, complete sequence Length = 132544 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 409 ccgcccgggcacggtgcccgccacc 433 |||||||||||| |||||||||||| Sbjct: 64373 ccgcccgggcaccgtgcccgccacc 64349
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 425 cccgccacctcctgcaccagcgcca 449 ||||||||| ||||||||||||||| Sbjct: 2113591 cccgccaccgcctgcaccagcgcca 2113615
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 44/51 (86%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||| ||||||||||||||| |||||||||||||| |||| Sbjct: 1748196 agcctgtacgacagcccgggcacggtgc---tcacctcctgcaccatcgcc 1748149
>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1606_D04 Length = 92729 Score = 42.1 bits (21), Expect = 1.6 Identities = 44/51 (86%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||| ||||||||||||||| |||||||||||||| |||| Sbjct: 90396 agcctgtacgacagcccgggcacggtgc---tcacctcctgcaccatcgcc 90349
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 42.1 bits (21), Expect = 1.6 Identities = 44/51 (86%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 398 agcctgtaggaccgcccgggcacggtgcccgccacctcctgcaccagcgcc 448 |||||||| ||| ||||||||||||||| |||||||||||||| |||| Sbjct: 415 agcctgtacgacagcccgggcacggtgc---tcacctcctgcaccatcgcc 368
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 caccacgcgcgtcttgtcgg 251 |||||||||||||||||||| Sbjct: 1501144 caccacgcgcgtcttgtcgg 1501163
>ref|XM_869465.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 2 (LOC519558), mRNA Length = 4956 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882650.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 13 (LOC519558), mRNA Length = 4977 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882646.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 12 (LOC519558), mRNA Length = 4845 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882641.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 11 (LOC519558), mRNA Length = 4896 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882634.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 10 (LOC519558), mRNA Length = 4869 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882630.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 9 (LOC519558), mRNA Length = 4902 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882623.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 8 (LOC519558), mRNA Length = 4926 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882614.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 7 (LOC519558), mRNA Length = 5013 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882608.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 6 (LOC519558), mRNA Length = 4989 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_882603.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 5 (LOC519558), mRNA Length = 4515 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_597781.2| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 1 (LOC519558), mRNA Length = 4539 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 746 cacctcctgcaccagcgcca 765
>ref|XM_882582.1| PREDICTED: Bos taurus similar to misshapen/NIK-related kinase isoform 1, transcript variant 3 (LOC519558), mRNA Length = 4869 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cacctcctgcaccagcgcca 449 |||||||||||||||||||| Sbjct: 1371 cacctcctgcaccagcgcca 1390
>ref|XM_324451.1| Neurospora crassa OR74A hypothetical protein (NCU05095.1) partial mRNA Length = 1554 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 tcttgtcggcgatggccgtgaact 266 |||||||||||| ||||||||||| Sbjct: 412 tcttgtcggcgacggccgtgaact 389
>ref|XM_951988.1| Neurospora crassa OR74A hypothetical protein (NCU05095.1) partial mRNA Length = 1554 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 tcttgtcggcgatggccgtgaact 266 |||||||||||| ||||||||||| Sbjct: 412 tcttgtcggcgacggccgtgaact 389
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 acttgagcctgacgagccag 169 |||||||||||||||||||| Sbjct: 2240394 acttgagcctgacgagccag 2240413
>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10 Length = 99967 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 tcttgtcggcgatggccgtgaact 266 |||||||||||| ||||||||||| Sbjct: 30040 tcttgtcggcgacggccgtgaact 30017
>gb|AY060392.1| Drosophila melanogaster LD29917 full length cDNA Length = 2146 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 caccagcgccacctccacgc 458 |||||||||||||||||||| Sbjct: 1329 caccagcgccacctccacgc 1348
>gb|AY249533.1| Rhodococcus ruber strain G3 alcohol dehydrogenase (adh4) gene, partial cds Length = 889 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gcgtcttgtcggcgatggcc 259 |||||||||||||||||||| Sbjct: 169 gcgtcttgtcggcgatggcc 150
>gb|AC007755.6|AC007755 Drosophila melanogaster, chromosome 3R, region 89A-89B, BAC clone BACR04C07, complete sequence Length = 173660 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 caccagcgccacctccacgc 458 |||||||||||||||||||| Sbjct: 47378 caccagcgccacctccacgc 47397
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 agacgtcatcaacgacgggcccgc 191 ||||| |||||||||||||||||| Sbjct: 2076190 agacggcatcaacgacgggcccgc 2076213
>gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, region 89B-89B, BAC clone BACR05C20, complete sequence Length = 177278 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 caccagcgccacctccacgc 458 |||||||||||||||||||| Sbjct: 34355 caccagcgccacctccacgc 34336
>gb|AE009489.1| Brucella melitensis 16M chromosome I, section 46 of 195 of the complete sequence Length = 11589 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 caccacgcgcgtcttgtcgg 251 |||||||||||||||||||| Sbjct: 3415 caccacgcgcgtcttgtcgg 3396
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 caccacgcgcgtcttgtcgg 251 |||||||||||||||||||| Sbjct: 1519193 caccacgcgcgtcttgtcgg 1519212
>emb|AJ888457.1| Acidianus two-tailed virus, complete viral genome Length = 62730 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 429 ccacctcctgcaccagcgccacctccac 456 ||||||||| ||||| |||||||||||| Sbjct: 34407 ccacctcctccaccaccgccacctccac 34434
>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the complete sequence Length = 236475 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 caccagcgccacctccacgc 458 |||||||||||||||||||| Sbjct: 125829 caccagcgccacctccacgc 125810
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 caccacgcgcgtcttgtcgg 251 |||||||||||||||||||| Sbjct: 1516347 caccacgcgcgtcttgtcgg 1516366
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gtgcccgccacctcctgcac 441 |||||||||||||||||||| Sbjct: 437153 gtgcccgccacctcctgcac 437172 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,587,818 Number of Sequences: 3902068 Number of extensions: 2587818 Number of successful extensions: 49571 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49030 Number of HSP's gapped (non-prelim): 513 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
