>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 213   aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 272
             |||||| |||| ||||||||||||||||  || || | ||| ||||| ||||| ||||| 
Sbjct: 94224 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 94165

                                    
Query: 273   aggcgaggccatatgaaggcgct 295
             || || ||||||||| |||||||
Sbjct: 94164 agccgcggccatatgtaggcgct 94142

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 213      aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 272
                |||||| |||| ||||||||||||||||  || || | ||| ||||| ||||| ||||| 
Sbjct: 24728264 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 24728323

                                       
Query: 273      aggcgaggccatatgaaggcgct 295
                || || ||||||||| |||||||
Sbjct: 24728324 agccgcggccatatgtaggcgct 24728346

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 213      aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 272
                |||||| |||| ||||||||||||||||  || || | ||| ||||| ||||| ||||| 
Sbjct: 25039934 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 25039993

                                       
Query: 273      aggcgaggccatatgaaggcgct 295
                || || ||||||||| |||||||
Sbjct: 25039994 agccgcggccatatgtaggcgct 25040016

>emb|BX897690.13| Zebrafish DNA sequence from clone CH211-197O9 in linkage group 20,
             complete sequence
          Length = 128296

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 114   aacatggatgcatttggatttgc 136
             |||||||||||||||||||||||
Sbjct: 47497 aacatggatgcatttggatttgc 47475



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   atggatgcatttggatttgc 136
             ||||||||||||||||||||
Sbjct: 46879 atggatgcatttggatttgc 46860

>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete
             sequence
          Length = 153053

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 25    atttattcaatggagaaacttttacaactc 54
             |||| ||||||||| |||||||||||||||
Sbjct: 35388 attttttcaatggaaaaacttttacaactc 35359

>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence
          Length = 145544

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 25    atttattcaatggagaaacttttacaactc 54
             |||| ||||||||| |||||||||||||||
Sbjct: 84355 attttttcaatggaaaaacttttacaactc 84384

>gb|AC106743.4| Homo sapiens chromosome 16 clone RP11-116D9, complete sequence
          Length = 117710

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 133   ttgcaggagaagaattaatttagaga 158
             ||||||||| ||||||||||||||||
Sbjct: 92650 ttgcaggaggagaattaatttagaga 92675

>emb|AL451005.9| Human DNA sequence from clone RP11-92B10 on chromosome X Contains the
             5' end of a variant of the CUL4B gene for cullin 4B and
             the 5' end of a variant of the gene for MCT-1 protein
             (MCT-1), complete sequence
          Length = 26768

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 300   atccacgttcctgggtttccc 320
             |||||||||||||||||||||
Sbjct: 17593 atccacgttcctgggtttccc 17573

>gb|AC021325.5|AC021325 Homo sapiens chromosome , clone RP11-23N15, complete sequence
          Length = 180568

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   attaatttagagacgaggtct 166
             |||||||||||||||||||||
Sbjct: 27684 attaatttagagacgaggtct 27664

>emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chromosome 2, complete
             sequence
          Length = 132674

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 127   ttggatttgcaggagaagaattaat 151
             ||||||||| |||||||||||||||
Sbjct: 28242 ttggatttggaggagaagaattaat 28266

>gb|AC115031.11| Mus musculus chromosome 3, clone RP24-257J5, complete sequence
          Length = 170460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 30     ttcaatggagaaacttttacaactc 54
              ||||||||| |||||||||||||||
Sbjct: 151426 ttcaatggaaaaacttttacaactc 151402

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ccggcatcgccagcgcggcg 395
               ||||||||||||||||||||
Sbjct: 3198311 ccggcatcgccagcgcggcg 3198292

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     accccgtgcacagcctgccg 362
               ||||||||||||||||||||
Sbjct: 3446202 accccgtgcacagcctgccg 3446221

>ref|XM_477237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 210  ccaaggtactccgcggtgagaggcttgaagac 241
            ||||| ||| |||| |||||||||||||||||
Sbjct: 1037 ccaagatacgccgccgtgagaggcttgaagac 1006

>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tttatttattcaatggagaa 41
             ||||||||||||||||||||
Sbjct: 63221 tttatttattcaatggagaa 63240

>ref|XM_643073.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (528.t00001)
           partial mRNA
          Length = 2586

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 atttggatttgcaggagaag 144
           ||||||||||||||||||||
Sbjct: 345 atttggatttgcaggagaag 364

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ccggcatcgccagcgcggcg 395
               ||||||||||||||||||||
Sbjct: 3649866 ccggcatcgccagcgcggcg 3649847

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ccggcatcgccagcgcggcg 395
               ||||||||||||||||||||
Sbjct: 3437082 ccggcatcgccagcgcggcg 3437063

>emb|AL356967.23| Human DNA sequence from clone RP11-427E4 on chromosome 6 Contains a
             novel pseudogene, complete sequence
          Length = 163869

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    attcaatggagaaactttta 48
             ||||||||||||||||||||
Sbjct: 39215 attcaatggagaaactttta 39196

>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tttatttattcaatggagaa 41
             ||||||||||||||||||||
Sbjct: 62061 tttatttattcaatggagaa 62080

>gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence
          Length = 154059

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     gaaggcaaactggagcttta 25
             ||||||||||||||||||||
Sbjct: 69953 gaaggcaaactggagcttta 69972

>gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome 12, complete sequence
          Length = 161791

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaggcaaactggagctttat 26
             ||||||||||||||||||||
Sbjct: 64903 aaggcaaactggagctttat 64884

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 210     ccaaggtactccgcggtgagaggcttgaagac 241
               ||||| ||| |||| |||||||||||||||||
Sbjct: 8092508 ccaagatacgccgccgtgagaggcttgaagac 8092477

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 22      tttatttattcaatggagaa 41
               ||||||||||||||||||||
Sbjct: 5376547 tttatttattcaatggagaa 5376566

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ccggcatcgccagcgcggcg 395
               ||||||||||||||||||||
Sbjct: 3186973 ccggcatcgccagcgcggcg 3186954

>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_C08
          Length = 117923

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 210   ccaaggtactccgcggtgagaggcttgaagac 241
             ||||| ||| |||| |||||||||||||||||
Sbjct: 26280 ccaagatacgccgccgtgagaggcttgaagac 26249

>dbj|AK069089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B14, full
            insert sequence
          Length = 3756

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   tttatttattcaatggagaa 41
            ||||||||||||||||||||
Sbjct: 3680 tttatttattcaatggagaa 3699

>emb|AL445363.7|CNS07ECY Human chromosome 14 DNA sequence BAC R-671J11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181987

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ttaatttagagacgaggtct 166
              ||||||||||||||||||||
Sbjct: 120425 ttaatttagagacgaggtct 120406

>gb|AY110277.1| Zea mays CL615_-1 mRNA sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 aaggcgctgatgatccacgt 307
           ||||||||||||||||||||
Sbjct: 617 aaggcgctgatgatccacgt 636

>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15,
             complete sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gaaggcaaactggagcttta 25
             ||||||||||||||||||||
Sbjct: 25502 gaaggcaaactggagcttta 25483

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ccggcatcgccagcgcggcg 395
               ||||||||||||||||||||
Sbjct: 3009575 ccggcatcgccagcgcggcg 3009556


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,237,706
Number of Sequences: 3902068
Number of extensions: 3237706
Number of successful extensions: 65048
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64761
Number of HSP's gapped (non-prelim): 287
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)