ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BCAT5_ARATH (Q9FYA6) Branched-chain-amino-acid aminotransferase ... 28 6.8

>BCAT5_ARATH (Q9FYA6) Branched-chain-amino-acid aminotransferase 5, chloroplast|
           precursor (EC 2.6.1.42) (Atbcat-5)
          Length = 415

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 234 CLSFSRTNCSALQQAASLRSFPSSTQLAA*CSTP 133
           C S + T+ + L   +SLR+FPSS+     C +P
Sbjct: 17  CASRAATSTTRLHSLSSLRNFPSSSLRIRHCPSP 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,266,641
Number of Sequences: 219361
Number of extensions: 495330
Number of successful extensions: 1268
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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