Clone Name | rbart25b10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1353 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 121 gcctcaaggacttggcaatggaggacgcggtttttggcccggctgcggccg 171 ||||| |||||||||||||||||||||||||| ||||| |||| ||||||| Sbjct: 1349 gcctcgaggacttggcaatggaggacgcggttcttggcgcggccgcggccg 1299 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 254 cggcggcgacgtcgacgaccaacacgctcatgtcgtt 290 ||||||||||||||||||| | |||||||||||||| Sbjct: 1219 cggcggcgacgtcgacgacggagacgctcatgtcgtt 1183
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 121 gcctcaaggacttggcaatggaggacgcggtttttggcccggctgcggccg 171 ||||| |||||||||||||||||||||||||| ||||| |||| ||||||| Sbjct: 5755375 gcctcgaggacttggcaatggaggacgcggttcttggcgcggccgcggccg 5755425 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 254 cggcggcgacgtcgacgaccaacacgctcatgtcgtt 290 ||||||||||||||||||| | |||||||||||||| Sbjct: 5755505 cggcggcgacgtcgacgacggagacgctcatgtcgtt 5755541 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggctgcggccggcaatgctt 180 |||||||||||||||||||| Sbjct: 25219329 ggctgcggccggcaatgctt 25219310
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 121 gcctcaaggacttggcaatggaggacgcggtttttggcccggctgcggccg 171 ||||| |||||||||||||||||||||||||| ||||| |||| ||||||| Sbjct: 44889 gcctcgaggacttggcaatggaggacgcggttcttggcgcggccgcggccg 44939 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 254 cggcggcgacgtcgacgaccaacacgctcatgtcgtt 290 ||||||||||||||||||| | |||||||||||||| Sbjct: 45019 cggcggcgacgtcgacgacggagacgctcatgtcgtt 45055
>gb|AC011072.9| Drosophila melanogaster clone BACR48A20, complete sequence Length = 166178 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cggcgacgtcgacgaccaacacgctca 283 ||||||||||||||||| ||||||||| Sbjct: 95657 cggcgacgtcgacgacccacacgctca 95683
>gb|AE003799.4| Drosophila melanogaster chromosome 2R, section 51 of 73 of the complete sequence Length = 316981 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cggcgacgtcgacgaccaacacgctca 283 ||||||||||||||||| ||||||||| Sbjct: 100036 cggcgacgtcgacgacccacacgctca 100062
>gb|AC149630.3| Rhinolophus ferrumequinum clone VMRC7-251C10, complete sequence Length = 163389 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 gaagctctttatctgtcctttg 219 |||||||||||||||||||||| Sbjct: 143122 gaagctctttatctgtcctttg 143101
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 42 ccgttacaatgtacggacatgtttgctagt 71 ||||||||||| |||||||||||| ||||| Sbjct: 105538 ccgttacaatgcacggacatgtttactagt 105567
>gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, complete sequence Length = 174113 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 gaagctctttatctgtcctttg 219 |||||||||||||||||||||| Sbjct: 68606 gaagctctttatctgtcctttg 68585
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 42 ccgttacaatgtacggacatgtttgctagt 71 ||||||||||| |||||||||||| ||||| Sbjct: 19477672 ccgttacaatgcacggacatgtttactagt 19477701
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 gaagctctttatctgtcctttg 219 |||||||||||||||||||||| Sbjct: 997377 gaagctctttatctgtcctttg 997356 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 gaagctctttatctgtcctttg 219 |||||||||||||||||||||| Sbjct: 390340 gaagctctttatctgtcctttg 390319
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 42 ccgttacaatgtacggacatgtttgctagt 71 ||||||||||| |||||||||||| ||||| Sbjct: 19488948 ccgttacaatgcacggacatgtttactagt 19488977
>gb|AC004896.1| Homo sapiens PAC clone RP4-811H12 from 7, complete sequence Length = 162215 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 gctctttatctgtcctttgcc 221 ||||||||||||||||||||| Sbjct: 136887 gctctttatctgtcctttgcc 136867
>gb|AC129177.3| Mus musculus BAC clone RP23-175A22 from 3, complete sequence Length = 229072 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 gtgtgtatgtgaagtaaaaaa 36 ||||||||||||||||||||| Sbjct: 81006 gtgtgtatgtgaagtaaaaaa 81026
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaataaatccgttacaatgta 54 ||||||||||||||||||||| Sbjct: 2907010 aaataaatccgttacaatgta 2907030
>ref|XM_476777.1| Oryza sativa (japonica cultivar-group), mRNA Length = 447 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 109 cggcggcgacgtcgacgacc 90
>gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062O09 map near S6115, complete sequence Length = 148654 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 agtgtgtatgtgaagtaaaa 34 |||||||||||||||||||| Sbjct: 39229 agtgtgtatgtgaagtaaaa 39248
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 59204 cggcggcgacgtcgacgacc 59223
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 29712173 cggcggcgacgtcgacgacc 29712154
>emb|BX663608.26| Zebrafish DNA sequence from clone DKEY-223I19 in linkage group 7, complete sequence Length = 190528 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 taagagtgtgtatgtgaagt 30 |||||||||||||||||||| Sbjct: 130685 taagagtgtgtatgtgaagt 130666
>gb|AY253266.1| Thlaspi arvense 2 AGAMOUS-like protein gene, putative regulatory intron and partial cds Length = 2966 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 atgtgaagtaaaaaataaat 41 |||||||||||||||||||| Sbjct: 2734 atgtgaagtaaaaaataaat 2715
>gb|AY253254.1| Thlaspi arvense 1 AGAMOUS-like protein gene, putative regulatory intron and partial cds Length = 2991 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 atgtgaagtaaaaaataaat 41 |||||||||||||||||||| Sbjct: 2759 atgtgaagtaaaaaataaat 2740
>emb|AL513462.1|NCB8L3 Neurospora crassa DNA linkage group V BAC contig B8L3 Length = 112716 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 caacacgctcatgtcgtttc 292 |||||||||||||||||||| Sbjct: 46209 caacacgctcatgtcgtttc 46228
>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete sequence Length = 198430 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 taagagtgtgtatgtgaagt 30 |||||||||||||||||||| Sbjct: 190708 taagagtgtgtatgtgaagt 190689
>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3, complete sequence Length = 228572 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 agagtgtgtatgtgaagtaa 32 |||||||||||||||||||| Sbjct: 39147 agagtgtgtatgtgaagtaa 39166
>gb|AC154190.2| Mus musculus BAC clone RP24-465P16 from chromosome 16, complete sequence Length = 150894 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tgtgtatgtgaagtaaaaaa 36 |||||||||||||||||||| Sbjct: 96574 tgtgtatgtgaagtaaaaaa 96593
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 agtgtgtatgtgaagtaaaa 34 |||||||||||||||||||| Sbjct: 12600606 agtgtgtatgtgaagtaaaa 12600587
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 3856036 cggcggcgacgtcgacgacc 3856055
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 29803595 cggcggcgacgtcgacgacc 29803576
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 ctgccccggcggcgacgtcgacga 271 |||| ||||||||||||||||||| Sbjct: 2820362 ctgctccggcggcgacgtcgacga 2820339
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 95148 cggcggcgacgtcgacgacc 95167
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggctgcggccggcaatgctt 180 |||||||||||||||||||| Sbjct: 119722 ggctgcggccggcaatgctt 119703
>dbj|AK108598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E04, full insert sequence Length = 1660 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ggctgcggccggcaatgctt 180 |||||||||||||||||||| Sbjct: 1429 ggctgcggccggcaatgctt 1448
>dbj|AK072410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A20, full insert sequence Length = 2655 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ggctgcggccggcaatgctt 180 |||||||||||||||||||| Sbjct: 1324 ggctgcggccggcaatgctt 1343
>dbj|AK065761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040O19, full insert sequence Length = 2757 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cggcggcgacgtcgacgacc 273 |||||||||||||||||||| Sbjct: 1035 cggcggcgacgtcgacgacc 1016
>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3, complete sequence Length = 174887 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 agagtgtgtatgtgaagtaa 32 |||||||||||||||||||| Sbjct: 80946 agagtgtgtatgtgaagtaa 80927
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 agtgtgtatgtgaagtaaaa 34 |||||||||||||||||||| Sbjct: 12679913 agtgtgtatgtgaagtaaaa 12679894
>emb|AL954133.5| Zebrafish DNA sequence from clone CH211-222H22, complete sequence Length = 206373 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 atgtgaagtaaaaaataaat 41 |||||||||||||||||||| Sbjct: 139279 atgtgaagtaaaaaataaat 139260
>gb|AC024069.29| Mus musculus BAC Clone 402k12 RPCI-23, complete sequence Length = 242808 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tatcttaagagtgtgtatgt 25 |||||||||||||||||||| Sbjct: 32438 tatcttaagagtgtgtatgt 32419
>gb|AC024915.24| Mus musculus C57CL/6J RPCI-23, complete sequence Length = 225646 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tatcttaagagtgtgtatgt 25 |||||||||||||||||||| Sbjct: 32438 tatcttaagagtgtgtatgt 32419 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,712,596 Number of Sequences: 3902068 Number of extensions: 3712596 Number of successful extensions: 66580 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65966 Number of HSP's gapped (non-prelim): 614 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)