ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25b07 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 47.0 bits (110), Expect = 3e-05 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 11/76 (14%) Frame = -3 Query: 456 CCGAPGVGVYNFNLTSKCGEP-----------GAYACDDPSNHWSWDGIHLTEAAYGHIA 310 CCG G YNF++T+ CG+ G+ AC PS +WDG H TEAA + Sbjct: 305 CCGYGGK--YNFSVTAPCGDTVTADDGTKIVVGSCAC--PSVRVNWDGAHYTEAANEYFF 360 Query: 309 RGWLYGPFADPPIVEN 262 G F+DPP+ N Sbjct: 361 DQISTGAFSDPPVPLN 376
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Frame = -3 Query: 459 ACCGAPGVGVYNFNLTSKCGEPGAYA---------CDDPSNHWSWDGIHLTEAA 325 +CCG G YN+N CG CD+P WDG+H T+AA Sbjct: 302 SCCGHGGK--YNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAA 353
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -3 Query: 375 DPSNHWSWDGIHLTEAAYGHIARGW 301 D + SWDG+HL+E Y IA W Sbjct: 109 DRNTDISWDGLHLSEIGYTKIANIW 133
>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1| transcriptional activation subunit 2) (Transcriptional coactivator CRSP150) (Vitamin D3 receptor-interacting protein complex 150 kDa component) (DRIP150) (Thyroid hormone receptor-ass Length = 1454 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +2 Query: 338 RWMPSQLQWLDGSSHAYAPGSPHLDVRLKLYTPTPGAPQHALGFCLSIPHL 490 +W P +LQ L+ G P L +T GAP H L C+ I L Sbjct: 1272 QWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKL 1322
>TSN10_HUMAN (Q9H1Z9) Tetraspanin-10 (Tspan-10) (Oculospanin)| Length = 355 Score = 29.6 bits (65), Expect = 4.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 456 CCGAPGVGVYNFNLTSKCGEPGAYACDDPSN 364 CCGA + NL C PG AC P++ Sbjct: 212 CCGAASYQDWQQNLYFNCSSPGVQACSLPAS 242
>TSN10_MOUSE (Q8VCF5) Tetraspanin-10 (Tspan-10) (Oculospanin)| Length = 331 Score = 29.3 bits (64), Expect = 6.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 456 CCGAPGVGVYNFNLTSKCGEPGAYACDDPSN 364 CCGA + NL C PG AC P++ Sbjct: 210 CCGAVSYQDWQQNLYFNCSSPGVQACSLPAS 240
>DCP_ECOLI (P24171) Peptidyl-dipeptidase dcp (EC 3.4.15.5) (Dipeptidyl| carboxypeptidase) Length = 680 Score = 29.3 bits (64), Expect = 6.1 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 14 HY-PTTIELFAPKHQKKACIYLSPTKDHRHNQLITMN*SAQHSTRHACVFFSLTRFHFST 190 HY P E K + A I L+P +N ++ + S + TR VFF++T H + Sbjct: 26 HYRPAFDEGMQQKRAEIAAIALNPQMPDFNNTILALEQSGELLTRVTSVFFAMTAAHTND 85 Query: 191 YIQ 199 +Q Sbjct: 86 ELQ 88
>PMP1_CHLPN (Q9Z9G5) Probable outer membrane protein pmp1 precursor (Polymorphic| membrane protein 1) (Outer membrane protein 6) Length = 922 Score = 29.3 bits (64), Expect = 6.1 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = +2 Query: 128 AQHSTRHACVFFSLTRFHFSTYIQ*PM-----CRCHVRKKQPSLCYSRFRF 265 A H +RHA V R+HF+ Y + CR H R + C S+FRF Sbjct: 873 AAHVSRHAFVGSGTGRYHFNDYTELLCRGSIECRPHARNYNIN-CGSKFRF 922
>Y2075_MYCTU (Q10683) Hypothetical protein Rv2075c/MT2135| Length = 487 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -3 Query: 486 WGMLRQKPRACCGAPGV-GVYNFNLTSKCGEPGAYACDDPSNHWS 355 W +PRA GA + G + + CG+P AC D + W+ Sbjct: 391 WSWAPDEPRAGAGACALQGADGRWVAASCGDPHPAACRDAAGRWT 435
>NR4A1_CANFA (P51666) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor| HMR) (Orphan nuclear receptor NGFI-B) Length = 598 Score = 28.9 bits (63), Expect = 7.9 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Frame = +2 Query: 257 FRFSTMGGSAKGP*SHPLAMWP*AASVRWMPSQLQWLDGSSHAYAPGSPHLDVRLKLYTP 436 F FS G + PL ++P A+ + + + + AP SPHLD L P Sbjct: 190 FSFSPPTGPSPSLAQSPLKLFPSQATCQLGERESYSISTAFPGLAPTSPHLDGPGMLDAP 249 Query: 437 TP------GAPQHALGFC 472 P GAP + G C Sbjct: 250 VPSAKARSGAPSGSEGRC 267
>GUNY_DICD3 (P27032) Minor endoglucanase Y precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase Y) (Cellulase Y) (EGY) Length = 332 Score = 28.9 bits (63), Expect = 7.9 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -3 Query: 366 NHWSWDGIHLTEAAYGHIARGWLYGPFADPPIVENRNLE*HREGCFLRTWHL 211 N W+W HL G W Y P A P+V+ N +G L W L Sbjct: 73 NLWNWTQSHLRNTTSGLFY--WRYDPSAANPVVDKNNAS---DGDVLIAWAL 119
>INHA_HUMAN (P05111) Inhibin alpha chain precursor| Length = 366 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/55 (29%), Positives = 21/55 (38%) Frame = +2 Query: 203 PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*AASVRWMPSQLQWL 367 P+C C R + + R G + S PL WP W PS L+ L Sbjct: 201 PLCTCSARPEATPFLVAHTRTRPPSGGERARRSTPLMSWP------WSPSALRLL 249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,867,255 Number of Sequences: 219361 Number of extensions: 1436085 Number of successful extensions: 3791 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3790 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
