>CND1_SCHPO (O94679) Condensin complex subunit 1 (p128) (XCAP-D2 homolog)|
          Length = 1158

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +1

Query: 13  KKMDFFLTFVSLVCSTNSEYHPGNNHFSLQLLSSIVSFHIWWRATTRDGSKVNNH-LTTY 189
           + MDFF+   S   S++  Y     H             IW + T+ +G+ + NH L+ Y
Sbjct: 552 ESMDFFVFCNSFGISSSKLYIKKMIHL------------IWVKGTSDEGNNIQNHVLSCY 599

Query: 190 RHNQLDTVNHNNTTRDAQWLNRFPVSFTDAVSLNVITS 303
           +    +   ++ T   A ++ R  +S T   SL  +TS
Sbjct: 600 KTLFFEPPPNSGTNEAANYIARNLISLTYDASLAELTS 637

>GCST_STAES (Q8CSF4) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage|
           system T protein)
          Length = 363

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 136 WRATTRDGSKVNNHLTTYRHNQ---LDTVNHNNTTRDAQWLNRFPVSFTDAVS 285
           + A   D   + + L TY+ N+   L  VN  NT +D QW+ +   +FT  VS
Sbjct: 87  YSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTVDVS 139

>GCST_STAEQ (Q5HP12) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage|
           system T protein)
          Length = 363

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 136 WRATTRDGSKVNNHLTTYRHNQ---LDTVNHNNTTRDAQWLNRFPVSFTDAVS 285
           + A   D   + + L TY+ N+   L  VN  NT +D QW+ +   +FT  VS
Sbjct: 87  YSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTVDVS 139

>BCD_DROME (P09081) Homeotic protein bicoid (PRD-4)|
          Length = 494

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 144 NNQRRL--EGE*SSHNI*TQSTRHSQPQQHHERCAMAQPLSCELHRCCEPECDYKLGRYI 317
           N+Q++L  +G    H +  Q  +  Q Q HH      Q  +C +    EPE DY      
Sbjct: 267 NHQQQLHHQGNHVPHQMQQQQQQAQQQQYHHFDFQQKQASACRVLVKDEPEADY------ 320

Query: 318 INLTANYTRKSG 353
            N  ++Y  +SG
Sbjct: 321 -NFNSSYYMRSG 331

>ADAM1_RAT (P70505) ADAM 1 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 1) (Fertilin alpha subunit)
          Length = 789

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 258 SCELHRCCEPECDYKLG 308
           +C+ H CCEP C  K+G
Sbjct: 460 ACDSHPCCEPTCTLKVG 476

>COX3_RAT (P05505) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 260

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 94  SLQLLSSIVSFHIWWRATTRDGSKVNNH 177
           SL LL++I++ + WWR   R+G+   +H
Sbjct: 43  SLGLLTNILTMYQWWRDIIREGTYQGHH 70

>COX3_DUGDU (Q8W9N0) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 261

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 97  LQLLSSIVSFHIWWRATTRDGSKVNNHLTT 186
           L LL++I++ + WWR   R+G+   +H  T
Sbjct: 45  LGLLTNILTMYQWWRDVVREGTFQGHHTPT 74

>YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I|
          Length = 3655

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 57  YKFRISSRKQPFFITVIIINSIVPYLV 137
           +KF I S  QPFF  V+ +++ +PYL+
Sbjct: 129 FKFCIESTAQPFFDLVLELSTNLPYLI 155

>GUAA_DICDI (P32073) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 718

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 45  PGLLYKFRISSRKQPFFITVIIINSIVPYLVEGNNQRRLEGE 170
           PG     RI    +P+ +     N++V YLV G     LE E
Sbjct: 461 PGPGLAIRIICADEPYLVNYDFTNNVVQYLVTGEASSELESE 502

>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1|
          Length = 1561

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 58  TNSEYHPGNNHFSLQLLSSIVSFHIWWRATTRDGSKVNNHL--TTYRHNQLDTVNHNN 225
           T+S   P     S    ++    HI  R +T   S++N HL  + ++H+ L   NH +
Sbjct: 503 TSSSLSPAKRSGSESPKNAKARVHIQSRTSTTPSSRINQHLQPSQHQHHTLSNQNHGH 560


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,987,630
Number of Sequences: 219361
Number of extensions: 1291910
Number of successful extensions: 3407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3405
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)