Clone Name | rbart25b01 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191140.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1578 Score = 293 bits (148), Expect = 3e-76 Identities = 202/220 (91%) Strand = Plus / Minus Query: 260 ctagtcgtcttggtcctggcacagctccttcctgagcctgtgcgagaagagcttgcacgc 319 |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 1578 ctagtcctcttgatcatggcacagctccttcctgagcctctgcgagaagagcttgcaggc 1519 Query: 320 gtccatgcagagatcgacggcggccgacagcgcgacgaacacggccacgtcgcccatgca 379 |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct: 1518 gtccatgcagaggtcgacggcggcggcgagcgcgacgaacagcgccacgtcgcccatgca 1459 Query: 380 cgccacgtgctgcacgccgacctgcacggtgggccggctggccttcccctcgccctccac 439 || |||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1458 cgtggcgtgctgcacgccgacctgcacggtgggccggctggccctcccctcgccctccgc 1399 Query: 440 cgtcgagcccatcacgaacccgccggcgaacggccacgcg 479 ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 1398 cgtggagcccatcacgaagccgccggcgaacggccacgcg 1359
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 293 bits (148), Expect = 3e-76 Identities = 202/220 (91%) Strand = Plus / Minus Query: 260 ctagtcgtcttggtcctggcacagctccttcctgagcctgtgcgagaagagcttgcacgc 319 |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 30914348 ctagtcctcttgatcatggcacagctccttcctgagcctctgcgagaagagcttgcaggc 30914289 Query: 320 gtccatgcagagatcgacggcggccgacagcgcgacgaacacggccacgtcgcccatgca 379 |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct: 30914288 gtccatgcagaggtcgacggcggcggcgagcgcgacgaacagcgccacgtcgcccatgca 30914229 Query: 380 cgccacgtgctgcacgccgacctgcacggtgggccggctggccttcccctcgccctccac 439 || |||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 30914228 cgtggcgtgctgcacgccgacctgcacggtgggccggctggccctcccctcgccctccgc 30914169 Query: 440 cgtcgagcccatcacgaacccgccggcgaacggccacgcg 479 ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 30914168 cgtggagcccatcacgaagccgccggcgaacggccacgcg 30914129 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand = Plus / Minus Query: 181 ttcttgtgatccgacccagcctaaactaaaagaagagccacaggccatcactttcacaag 240 |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 30914525 ttcttgtgatccgacccagcctaaactaaa--aacagccacaggccatcactttcacaag 30914468 Query: 241 a 241 | Sbjct: 30914467 a 30914467 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 127 aaagaatcgaaagaatatcgcaacgaaagaata 159 |||||||| |||||||||||| | ||||||||| Sbjct: 30914575 aaagaatcaaaagaatatcgcgaggaaagaata 30914543
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 293 bits (148), Expect = 3e-76 Identities = 202/220 (91%) Strand = Plus / Minus Query: 260 ctagtcgtcttggtcctggcacagctccttcctgagcctgtgcgagaagagcttgcacgc 319 |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 114715 ctagtcctcttgatcatggcacagctccttcctgagcctctgcgagaagagcttgcaggc 114656 Query: 320 gtccatgcagagatcgacggcggccgacagcgcgacgaacacggccacgtcgcccatgca 379 |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct: 114655 gtccatgcagaggtcgacggcggcggcgagcgcgacgaacagcgccacgtcgcccatgca 114596 Query: 380 cgccacgtgctgcacgccgacctgcacggtgggccggctggccttcccctcgccctccac 439 || |||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 114595 cgtggcgtgctgcacgccgacctgcacggtgggccggctggccctcccctcgccctccgc 114536 Query: 440 cgtcgagcccatcacgaacccgccggcgaacggccacgcg 479 ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 114535 cgtggagcccatcacgaagccgccggcgaacggccacgcg 114496 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand = Plus / Minus Query: 181 ttcttgtgatccgacccagcctaaactaaaagaagagccacaggccatcactttcacaag 240 |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 114892 ttcttgtgatccgacccagcctaaactaaa--aacagccacaggccatcactttcacaag 114835 Query: 241 a 241 | Sbjct: 114834 a 114834 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 127 aaagaatcgaaagaatatcgcaacgaaagaata 159 |||||||| |||||||||||| | ||||||||| Sbjct: 114942 aaagaatcaaaagaatatcgcgaggaaagaata 114910
>dbj|AK110766.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A06, full insert sequence Length = 1466 Score = 293 bits (148), Expect = 3e-76 Identities = 202/220 (91%) Strand = Plus / Minus Query: 260 ctagtcgtcttggtcctggcacagctccttcctgagcctgtgcgagaagagcttgcacgc 319 |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 1363 ctagtcctcttgatcatggcacagctccttcctgagcctctgcgagaagagcttgcaggc 1304 Query: 320 gtccatgcagagatcgacggcggccgacagcgcgacgaacacggccacgtcgcccatgca 379 |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct: 1303 gtccatgcagaggtcgacggcggcggcgagcgcgacgaacagcgccacgtcgcccatgca 1244 Query: 380 cgccacgtgctgcacgccgacctgcacggtgggccggctggccttcccctcgccctccac 439 || |||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1243 cgtggcgtgctgcacgccgacctgcacggtgggccggctggccctcccctcgccctccgc 1184 Query: 440 cgtcgagcccatcacgaacccgccggcgaacggccacgcg 479 ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 1183 cgtggagcccatcacgaagccgccggcgaacggccacgcg 1144
>ref|NM_194360.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1428 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgcagagatcgacggcg 341 ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||| ||||| ||| Sbjct: 1397 agctccttcctgagcttgtgggagaacagcctgcacgcgtccatgctgaggtcgaccgcg 1338 Query: 342 gccgacagcgcgacgaacacggccacgtc 370 || | ||||| |||||| ||||| |||| Sbjct: 1337 gcggcgagcgccacgaacgcggccgcgtc 1309
>ref|NM_184894.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1308 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgcagagatcgacggcg 341 ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||| ||||| ||| Sbjct: 1277 agctccttcctgagcttgtgggagaacagcctgcacgcgtccatgctgaggtcgaccgcg 1218 Query: 342 gccgacagcgcgacgaacacggccacgtc 370 || | ||||| |||||| ||||| |||| Sbjct: 1217 gcggcgagcgccacgaacgcggccgcgtc 1189
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgcagagatcgacggcg 341 ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||| ||||| ||| Sbjct: 31724538 agctccttcctgagcttgtgggagaacagcctgcacgcgtccatgctgaggtcgaccgcg 31724597 Query: 342 gccgacagcgcgacgaacacggccacgtc 370 || | ||||| |||||| ||||| |||| Sbjct: 31724598 gcggcgagcgccacgaacgcggccgcgtc 31724626
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgcagagatcgacggcg 341 ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||| ||||| ||| Sbjct: 49764 agctccttcctgagcttgtgggagaacagcctgcacgcgtccatgctgaggtcgaccgcg 49823 Query: 342 gccgacagcgcgacgaacacggccacgtc 370 || | ||||| |||||| ||||| |||| Sbjct: 49824 gcggcgagcgccacgaacgcggccgcgtc 49852
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgcagagatcgacggcg 341 ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||| ||||| ||| Sbjct: 31815054 agctccttcctgagcttgtgggagaacagcctgcacgcgtccatgctgaggtcgaccgcg 31815113 Query: 342 gccgacagcgcgacgaacacggccacgtc 370 || | ||||| |||||| ||||| |||| Sbjct: 31815114 gcggcgagcgccacgaacgcggccgcgtc 31815142
>dbj|AK100695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I22, full insert sequence Length = 1734 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgcagagatcgacggcg 341 ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||| ||||| ||| Sbjct: 1418 agctccttcctgagcttgtgggagaacagcctgcacgcgtccatgctgaggtcgaccgcg 1359 Query: 342 gccgacagcgcgacgaacacggccacgtc 370 || | ||||| |||||| ||||| |||| Sbjct: 1358 gcggcgagcgccacgaacgcggccgcgtc 1330
>gb|AY596533.1| Saccharum officinarum clone SCJLRZ1027E09, complete sequence Length = 1674 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 280 acagctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgc 327 ||||||||||||| |||| ||| ||||||||| ||||||||||||||| Sbjct: 296 acagctccttcctcagccggtgggagaagagcctgcacgcgtccatgc 343
>gb|BT018822.1| Zea mays clone EL01N0532D03.d mRNA sequence Length = 1417 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 282 agctccttcctgagcctgtgcgagaagagcttgcacgcgtccatgc 327 ||||||||||| |||| ||| ||||||||| ||||||||||||||| Sbjct: 1094 agctccttcctcagccggtgggagaagagcctgcacgcgtccatgc 1049
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 336 acggcggccgacagcgcgacgaaca 360 ||||||||||||||||||||||||| Sbjct: 629117 acggcggccgacagcgcgacgaaca 629093
>ref|XM_476532.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1833 Score = 48.1 bits (24), Expect = 0.027 Identities = 126/160 (78%) Strand = Plus / Minus Query: 303 gagaagagcttgcacgcgtccatgcagagatcgacggcggccgacagcgcgacgaacacg 362 ||||||||| |||||||||||||| || ||||||||||| | ||||| |||||| | Sbjct: 1407 gagaagagccggcacgcgtccatgctcaggtcgacggcggcggcgagcgccacgaacgcc 1348 Query: 363 gccacgtcgcccatgcacgccacgtgctgcacgccgacctgcacggtgggccggctggcc 422 ||| |||| || |||| | |||| ||||||||| |||| ||| | ||||||||| Sbjct: 1347 gccgcgtcctccgcgcacccgacgttctgcacgcccacctccaccgccggccggctgcat 1288 Query: 423 ttcccctcgccctccaccgtcgagcccatcacgaacccgc 462 |||||||| |||| ||||| || |||||||||||||| Sbjct: 1287 ttcccctccccctgcaccgccgccgacatcacgaacccgc 1248
>dbj|AB110179.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPR033 Length = 1755 Score = 48.1 bits (24), Expect = 0.027 Identities = 126/160 (78%) Strand = Plus / Minus Query: 303 gagaagagcttgcacgcgtccatgcagagatcgacggcggccgacagcgcgacgaacacg 362 ||||||||| |||||||||||||| || ||||||||||| | ||||| |||||| | Sbjct: 1387 gagaagagccggcacgcgtccatgctcaggtcgacggcggcggcgagcgccacgaacgcc 1328 Query: 363 gccacgtcgcccatgcacgccacgtgctgcacgccgacctgcacggtgggccggctggcc 422 ||| |||| || |||| | |||| ||||||||| |||| ||| | ||||||||| Sbjct: 1327 gccgcgtcctccgcgcacccgacgttctgcacgcccacctccaccgccggccggctgcat 1268 Query: 423 ttcccctcgccctccaccgtcgagcccatcacgaacccgc 462 |||||||| |||| ||||| || |||||||||||||| Sbjct: 1267 ttcccctccccctgcaccgccgccgacatcacgaacccgc 1228
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.027 Identities = 126/160 (78%) Strand = Plus / Plus Query: 303 gagaagagcttgcacgcgtccatgcagagatcgacggcggccgacagcgcgacgaacacg 362 ||||||||| |||||||||||||| || ||||||||||| | ||||| |||||| | Sbjct: 1803222 gagaagagccggcacgcgtccatgctcaggtcgacggcggcggcgagcgccacgaacgcc 1803281 Query: 363 gccacgtcgcccatgcacgccacgtgctgcacgccgacctgcacggtgggccggctggcc 422 ||| |||| || |||| | |||| ||||||||| |||| ||| | ||||||||| Sbjct: 1803282 gccgcgtcctccgcgcacccgacgttctgcacgcccacctccaccgccggccggctgcat 1803341 Query: 423 ttcccctcgccctccaccgtcgagcccatcacgaacccgc 462 |||||||| |||| ||||| || |||||||||||||| Sbjct: 1803342 ttcccctccccctgcaccgccgccgacatcacgaacccgc 1803381
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 48.1 bits (24), Expect = 0.027 Identities = 126/160 (78%) Strand = Plus / Plus Query: 303 gagaagagcttgcacgcgtccatgcagagatcgacggcggccgacagcgcgacgaacacg 362 ||||||||| |||||||||||||| || ||||||||||| | ||||| |||||| | Sbjct: 7801 gagaagagccggcacgcgtccatgctcaggtcgacggcggcggcgagcgccacgaacgcc 7860 Query: 363 gccacgtcgcccatgcacgccacgtgctgcacgccgacctgcacggtgggccggctggcc 422 ||| |||| || |||| | |||| ||||||||| |||| ||| | ||||||||| Sbjct: 7861 gccgcgtcctccgcgcacccgacgttctgcacgcccacctccaccgccggccggctgcat 7920 Query: 423 ttcccctcgccctccaccgtcgagcccatcacgaacccgc 462 |||||||| |||| ||||| || |||||||||||||| Sbjct: 7921 ttcccctccccctgcaccgccgccgacatcacgaacccgc 7960
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 48.1 bits (24), Expect = 0.027 Identities = 126/160 (78%) Strand = Plus / Plus Query: 303 gagaagagcttgcacgcgtccatgcagagatcgacggcggccgacagcgcgacgaacacg 362 ||||||||| |||||||||||||| || ||||||||||| | ||||| |||||| | Sbjct: 55441 gagaagagccggcacgcgtccatgctcaggtcgacggcggcggcgagcgccacgaacgcc 55500 Query: 363 gccacgtcgcccatgcacgccacgtgctgcacgccgacctgcacggtgggccggctggcc 422 ||| |||| || |||| | |||| ||||||||| |||| ||| | ||||||||| Sbjct: 55501 gccgcgtcctccgcgcacccgacgttctgcacgcccacctccaccgccggccggctgcat 55560 Query: 423 ttcccctcgccctccaccgtcgagcccatcacgaacccgc 462 |||||||| |||| ||||| || |||||||||||||| Sbjct: 55561 ttcccctccccctgcaccgccgccgacatcacgaacccgc 55600
>dbj|AK106244.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D03, full insert sequence Length = 1833 Score = 48.1 bits (24), Expect = 0.027 Identities = 126/160 (78%) Strand = Plus / Minus Query: 303 gagaagagcttgcacgcgtccatgcagagatcgacggcggccgacagcgcgacgaacacg 362 ||||||||| |||||||||||||| || ||||||||||| | ||||| |||||| | Sbjct: 1407 gagaagagccggcacgcgtccatgctcaggtcgacggcggcggcgagcgccacgaacgcc 1348 Query: 363 gccacgtcgcccatgcacgccacgtgctgcacgccgacctgcacggtgggccggctggcc 422 ||| |||| || |||| | |||| ||||||||| |||| ||| | ||||||||| Sbjct: 1347 gccgcgtcctccgcgcacccgacgttctgcacgcccacctccaccgccggccggctgcat 1288 Query: 423 ttcccctcgccctccaccgtcgagcccatcacgaacccgc 462 |||||||| |||| ||||| || |||||||||||||| Sbjct: 1287 ttcccctccccctgcaccgccgccgacatcacgaacccgc 1248
>emb|Z81010.2|HSN10C3 Human DNA sequence from clone LL22NC03-10C3 on chromosome 22, complete sequence Length = 38115 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 266 gtcttggtcctggcacagctcct 288 ||||||||||||||||||||||| Sbjct: 27114 gtcttggtcctggcacagctcct 27136
>gb|M12783.1|HUMSISPDG Human c-sis/platelet-derived growth factor 2 (SIS/PDGF2) mRNA, complete cds Length = 3798 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 266 gtcttggtcctggcacagctcct 288 ||||||||||||||||||||||| Sbjct: 3723 gtcttggtcctggcacagctcct 3745
>gb|AC121291.18| Mus musculus chromosome 5, clone RP23-170M15, complete sequence Length = 192717 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 159 aaacacacactcattcgatctgttct 184 |||||||||||||||| ||||||||| Sbjct: 156601 aaacacacactcattctatctgttct 156626
>gb|AC158150.9| Mus musculus chromosome 5, clone RP23-173B13, complete sequence Length = 227131 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 159 aaacacacactcattcgatctgttct 184 |||||||||||||||| ||||||||| Sbjct: 212746 aaacacacactcattctatctgttct 212721
>gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold Length = 347743 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 35 aatattcatctcaatatgatatattg 60 ||||||||||||||||||| |||||| Sbjct: 211238 aatattcatctcaatatgaaatattg 211213
>ref|XM_479916.1| Oryza sativa (japonica cultivar-group), mRNA Length = 903 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 cagcgcgacgaacacggccacgtcg 371 |||| |||||||||||||||||||| Sbjct: 216 cagcacgacgaacacggccacgtcg 192
>ref|XM_755296.1| Ustilago maydis 521 hypothetical protein (UM04242.1) partial mRNA Length = 3471 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 gctgcacgccgacctgcacgg 408 ||||||||||||||||||||| Sbjct: 1365 gctgcacgccgacctgcacgg 1385
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 cagcgcgacgaacacggccacgtcg 371 |||| |||||||||||||||||||| Sbjct: 1626108 cagcacgacgaacacggccacgtcg 1626084
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 cagcgcgacgaacacggccacgtcg 371 |||| |||||||||||||||||||| Sbjct: 25608 cagcacgacgaacacggccacgtcg 25584
>dbj|AP001726.1| Homo sapiens genomic DNA, chromosome 21q, section 70/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 217 gccacaggccatcactttcacaagactca 245 |||||||||||||| ||||||| |||||| Sbjct: 197807 gccacaggccatcagtttcacaggactca 197835
>gb|AF020662.1|AF020662 Homo sapiens cosmid Q31A10 from the Down Syndrome region of chromosome 21q22, complete sequence Length = 35704 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 217 gccacaggccatcactttcacaagactca 245 |||||||||||||| ||||||| |||||| Sbjct: 22875 gccacaggccatcagtttcacaggactca 22903
>dbj|AP000696.1| Homo sapiens genomic DNA, chromosome 21q22.2, BAC clone:KB1572B10, CBR1-HLCS region Length = 163752 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 217 gccacaggccatcactttcacaagactca 245 |||||||||||||| ||||||| |||||| Sbjct: 135036 gccacaggccatcagtttcacaggactca 135064
>dbj|AP000697.1| Homo sapiens genomic DNA, chromosome 21q22.2, BAC clone:KB594G10, CBR1-HLCS region Length = 136219 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 217 gccacaggccatcactttcacaagactca 245 |||||||||||||| ||||||| |||||| Sbjct: 13538 gccacaggccatcagtttcacaggactca 13566
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cggcggccgacagcgcgacg 356 |||||||||||||||||||| Sbjct: 3103117 cggcggccgacagcgcgacg 3103136
>ref|XM_584462.2| PREDICTED: Bos taurus similar to NOD3 protein (LOC507786), mRNA Length = 4750 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gcacggtgggccggctggccttcc 426 ||||| |||||||||||||||||| Sbjct: 1580 gcacgctgggccggctggccttcc 1603
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 cggccgacagcgcgacgaacacggccac 367 |||||| ||||||| ||||||||||||| Sbjct: 1186446 cggccgccagcgcgccgaacacggccac 1186473
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cggcggccgacagcgcgacg 356 |||||||||||||||||||| Sbjct: 130652 cggcggccgacagcgcgacg 130633
>gb|AY245700.1| Plagiorchiidae sp. RD-2003 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 3315 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 acccgccggcgaacggccac 476 |||||||||||||||||||| Sbjct: 1499 acccgccggcgaacggccac 1480
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tgcagagatcgacggcggcc 344 |||||||||||||||||||| Sbjct: 123846 tgcagagatcgacggcggcc 123827
>gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequence Length = 138094 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tgaatattcatctcaatatg 52 |||||||||||||||||||| Sbjct: 127870 tgaatattcatctcaatatg 127889
>emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chromosome 10 Contains the 5' end of a novel gene, a novel gene (MGC35285) and a CpG island, complete sequence Length = 97407 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 acacacactcattcgatctgttct 184 |||||||||||||| ||||||||| Sbjct: 66780 acacacactcattctatctgttct 66803
>gb|BC005094.1| Homo sapiens transmembrane protein 79, mRNA (cDNA clone MGC:13102 IMAGE:3955668), complete cds Length = 2226 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcacagctccttcctgagc 296 |||||||||||||||||||| Sbjct: 1640 ggcacagctccttcctgagc 1659
>emb|AL589685.17| Human DNA sequence from clone RP11-443G18 on chromosome 1 Contains the 5' end of the gene for Est1p-like protein B (EST1B), novel gene (MGC13102), novel gene (MGC31963), a von Hippel-Lindau syndrome (VHL) pseudogene, the CCT3 gene for chaperonin containing TCP1 subunit 3 (gamma), the gene for SSTK-interacting protein (SSTK-IP) and the 5' end of the RHBG gene for Rhesus blood group B glycoprotein, complete sequence Length = 107819 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcacagctccttcctgagc 296 |||||||||||||||||||| Sbjct: 17412 ggcacagctccttcctgagc 17431
>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene DKFZP566K0524, the gene for a novel protein similar to tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187 pseudogene, the 3' end of a novel gene, the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2) and a CpG island, complete sequence Length = 171930 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 acacacactcattcgatctgttct 184 |||||||||||||| ||||||||| Sbjct: 86321 acacacactcattctatctgttct 86344
>emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chromosome 6 Contains the gene for a novel protein (containing KIAA0082, FLJ22156 and FLJ20341), three novel genes, the gene for a novel protein and three CpG islands, complete sequence Length = 162451 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 ttcctgagcctgtgcgagaagagc 311 ||||||||||||| |||||||||| Sbjct: 157568 ttcctgagcctgtccgagaagagc 157591
>gb|AC174293.6| Medicago truncatula clone mth2-70h5, complete sequence Length = 132047 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tgaatattcatctcaatatg 52 |||||||||||||||||||| Sbjct: 58117 tgaatattcatctcaatatg 58098
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 cggccgacagcgcgacgaacacggccac 367 |||||| ||||||| ||||||||||||| Sbjct: 2502377 cggccgccagcgcgccgaacacggccac 2502404 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tgcacgccgacctgcacggt 409 |||||||||||||||||||| Sbjct: 451672 tgcacgccgacctgcacggt 451653
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cggcggccgacagcgcgacg 356 |||||||||||||||||||| Sbjct: 3982242 cggcggccgacagcgcgacg 3982223
>gb|AC116903.3| Homo sapiens chromosome 15, clone RP11-152L20, complete sequence Length = 159893 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acgaaagaataaacacacac 168 |||||||||||||||||||| Sbjct: 91426 acgaaagaataaacacacac 91407
>dbj|AK128448.1| Homo sapiens cDNA FLJ46591 fis, clone THYMU3044445 Length = 3745 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 ttcctgagcctgtgcgagaagagc 311 ||||||||||||| |||||||||| Sbjct: 3565 ttcctgagcctgtccgagaagagc 3588
>dbj|AK124631.1| Homo sapiens cDNA FLJ42640 fis, clone BRACE3025153 Length = 3902 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggccatcactttcacaagac 242 |||||||||||| ||||||||||| Sbjct: 3210 cacaggccatcagtttcacaagac 3233
>dbj|AK122634.1| Homo sapiens cDNA FLJ16057 fis, clone TCOLN1000037 Length = 1936 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcacagctccttcctgagc 296 |||||||||||||||||||| Sbjct: 1396 ggcacagctccttcctgagc 1415
>dbj|AK056816.1| Homo sapiens cDNA FLJ32254 fis, clone PROST1000220 Length = 2434 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcacagctccttcctgagc 296 |||||||||||||||||||| Sbjct: 1891 ggcacagctccttcctgagc 1910
>emb|CR591803.1| full-length cDNA clone CS0DG004YC13 of B cells (Ramos cell line) of Homo sapiens (human) Length = 2173 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcacagctccttcctgagc 296 |||||||||||||||||||| Sbjct: 1652 ggcacagctccttcctgagc 1671
>gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180982 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ccttcccctcgccctccacc 440 |||||||||||||||||||| Sbjct: 151187 ccttcccctcgccctccacc 151168
>ref|NM_169874.1| Drosophila melanogaster branchless CG4608-RA (bnl), mRNA Length = 3632 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcacgcgtccatgcagagat 333 |||||||||||||||||||| Sbjct: 2031 gcacgcgtccatgcagagat 2012
>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence Length = 154259 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 acacacactcattcgatctgttct 184 |||||||||||||| ||||||||| Sbjct: 75411 acacacactcattctatctgttct 75388
>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence Length = 186308 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 acacacactcattcgatctgttct 184 |||||||||||||| ||||||||| Sbjct: 83695 acacacactcattctatctgttct 83718
>gb|AC015908.10| Homo sapiens chromosome 17, clone RP11-963H4, complete sequence Length = 158693 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 atattcatctcaatatgatatatt 59 |||||||| ||||||||||||||| Sbjct: 134300 atattcatgtcaatatgatatatt 134323
>ref|NM_032323.1| Homo sapiens transmembrane protein 79 (TMEM79), mRNA Length = 2226 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ggcacagctccttcctgagc 296 |||||||||||||||||||| Sbjct: 1640 ggcacagctccttcctgagc 1659
>emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 in linkage group 5, complete sequence Length = 188075 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 178044 aattgtttctgaatattcat 178025 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 156437 aattgtttctgaatattcat 156418
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cgacggcggccgacagcgcg 353 |||||||||||||||||||| Sbjct: 811966 cgacggcggccgacagcgcg 811947
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 cggccgacagcgcgacgaacacggccac 367 |||||| ||||||| ||||||||||||| Sbjct: 260508 cggccgccagcgcgccgaacacggccac 260481
>gb|AC020658.6|AC020658 Homo sapiens chromosome 15 clone RP11-133K1 map 15q14, complete sequence Length = 159007 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggccatcactttcacaagac 242 |||||||||||| ||||||||||| Sbjct: 73790 cacaggccatcagtttcacaagac 73813
>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR48D03, complete sequence Length = 175917 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcacgcgtccatgcagagat 333 |||||||||||||||||||| Sbjct: 109369 gcacgcgtccatgcagagat 109388
>gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR02O09, complete sequence Length = 155751 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcacgcgtccatgcagagat 333 |||||||||||||||||||| Sbjct: 15678 gcacgcgtccatgcagagat 15697
>gb|BT003790.1| Drosophila melanogaster GH08887 full insert cDNA Length = 4313 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcacgcgtccatgcagagat 333 |||||||||||||||||||| Sbjct: 2031 gcacgcgtccatgcagagat 2012
>gb|AF373806.1| Sinorhizobium meliloti GTP cyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase (ribA) gene, complete cds Length = 1426 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tgcagagatcgacggcggcc 344 |||||||||||||||||||| Sbjct: 565 tgcagagatcgacggcggcc 546
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 446 gcccatcacgaacccgccggcgaacggc 473 ||||||||||| | |||||||||||||| Sbjct: 2698778 gcccatcacgatcgcgccggcgaacggc 2698805
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 cggccgacagcgcgacgaac 359 |||||||||||||||||||| Sbjct: 6707217 cggccgacagcgcgacgaac 6707236
>emb|BX649477.10| Zebrafish DNA sequence from clone CH211-265K4 in linkage group 5, complete sequence Length = 148317 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 37402 aattgtttctgaatattcat 37383
>gb|AY037858.1| Cercopithicine herpesvirus 15 strain LCL8664, complete genome Length = 171096 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 cccctcgccctccaccgtcg 444 |||||||||||||||||||| Sbjct: 48352 cccctcgccctccaccgtcg 48371
>emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in linkage group 20, complete sequence Length = 195351 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 59950 aattgtttctgaatattcat 59969
>emb|BX284681.4| Zebrafish DNA sequence from clone DKEY-197D18 in linkage group 20, complete sequence Length = 96203 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 86014 aattgtttctgaatattcat 85995 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 52707 aattgtttctgaatattcat 52688
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete sequence Length = 242618 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcacgcgtccatgcagagat 333 |||||||||||||||||||| Sbjct: 204983 gcacgcgtccatgcagagat 205002
>emb|AL845435.19| Zebrafish DNA sequence from clone CH211-176G13 in linkage group 10, complete sequence Length = 141424 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 58636 aattgtttctgaatattcat 58617
>gb|AC005319.1|AC005319 Human Chromosome 15q26.1 PAC clone pDJ430i19, complete sequence Length = 118741 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acgaaagaataaacacacac 168 |||||||||||||||||||| Sbjct: 10616 acgaaagaataaacacacac 10597
>gb|U82273.1|DMU82273 Drosophila melanogaster FGF homolog (branchless) mRNA, complete cds Length = 2742 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcacgcgtccatgcagagat 333 |||||||||||||||||||| Sbjct: 1140 gcacgcgtccatgcagagat 1121
>emb|AL845369.7| Zebrafish DNA sequence from clone CH211-12E13 in linkage group 5, complete sequence Length = 190981 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 74964 aattgtttctgaatattcat 74945 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 52778 aattgtttctgaatattcat 52759
>emb|AL928870.5| Zebrafish DNA sequence from clone CH211-237D5 in linkage group 20, complete sequence Length = 179253 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aattgtttctgaatattcat 43 |||||||||||||||||||| Sbjct: 11203 aattgtttctgaatattcat 11184 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,851,940 Number of Sequences: 3902068 Number of extensions: 3851940 Number of successful extensions: 84652 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83631 Number of HSP's gapped (non-prelim): 1013 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)