>ZN611_HUMAN (Q8N823) Zinc finger protein 611|
          Length = 705

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
 Frame = +1

Query: 58  IHTNRKNYPCIPMLHTIDKFYSILYIRMLPTSDKFYIRV*CDHTSCPTFYMRSTHTKIWE 237
           +H+  K Y C    +T     S++Y R L T +K Y    CD        + S HT+I  
Sbjct: 615 LHSGEKPYKCNECGNTFRHCSSLIYHRRLHTGEKSYKCTICDKAFVRNSLL-SRHTRIHT 673

Query: 238 IGKNVNSLQTGQR-KILHHRSYSASLHTSE 324
             K     + G+      H S    +HT E
Sbjct: 674 AEKPYKCNECGKAFNQQSHLSRHHRIHTGE 703

>TNR1B_RAT (Q80WY6) Tumor necrosis factor receptor superfamily member 1B|
           precursor (Tumor necrosis factor receptor 2) (TNF-R2)
           (Tumor necrosis factor receptor type II) (p75) (p80
           TNF-alpha receptor)
          Length = 474

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 80  ILASPCCTQSISFIPSFTSVCCPHRISFILGF--NATTQA 193
           ++ S C   + S   S T VC PHRI  IL    NA+T A
Sbjct: 161 VICSACAPGTFSDTTSSTDVCRPHRICSILAIPGNASTDA 200

>PEVR2_HUMAN (Q9NWF4) Porcine endogenous retrovirus A receptor 2 precursor|
           (PERV-A receptor 2) (Protein GPR172B)
          Length = 448

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 80  ILASPCCTQSISFIPSFTSVCCPHRISFILG 172
           +LA  CCT +++F+P  + +  P   SF LG
Sbjct: 120 VLAMACCTSNVTFLPFLSHLPPPFLRSFFLG 150

>ASCD_YERPE (P68641) CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase|
           reductase (CDP-6-deoxy-delta-3,4-glucoseen reductase)
           (EC 1.17.1.-) (E3)
          Length = 328

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 25  LEKEAQWYLSMIHTNRKNYPC-IPMLHTIDKFYSILYIRMLPTSDKFYI 168
           +E +  +Y  + H  +K YPC +  +  I +  +IL +R+ PT+   Y+
Sbjct: 82  IELDVNYYPELSHIQKKTYPCKLDSIEFIGEDIAILSLRLPPTAKIQYL 130

>TNR1B_MOUSE (P25119) Tumor necrosis factor receptor superfamily member 1B|
           precursor (Tumor necrosis factor receptor 2) (TNF-R2)
           (Tumor necrosis factor receptor type II) (p75) (p80
           TNF-alpha receptor)
          Length = 474

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 65  PTGKTILASPCCTQSISFIPSFTSVCCPHRISFILGF--NATTQA 193
           P G  +L   C   + S   S T VC PHRI  IL    NA+T A
Sbjct: 157 PNGN-VLCKACAPGTFSDTTSSTDVCRPHRICSILAIPGNASTDA 200

>PEVR2_PAPHA (Q863Y8) Porcine endogenous retrovirus A receptor 2 precursor|
           (PERV-A receptor 2) (Protein GPR172B)
          Length = 448

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 80  ILASPCCTQSISFIPSFTSVCCPHRISFILG 172
           +LA  CCT +++F+P  + +  P   SF LG
Sbjct: 120 VLALACCTSNVTFLPFLSHLPPPFLRSFFLG 150

>ZN483_HUMAN (Q8TF39) Zinc finger protein 483|
          Length = 744

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 58  IHTNRKNYPCIPMLHTIDKFYSILYIRMLPTSDKFYIRV*CDHTSCPTFYMRSTHTKI 231
           IHT  K Y C     T   F S++Y + L + +K Y    C+  + PT  + S H +I
Sbjct: 600 IHTGEKPYLCNDCGMTFSHFTSVIYHQRLHSGEKPYKCNQCE-KAFPTHSLLSRHQRI 656

>ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600|
          Length = 722

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = +1

Query: 58  IHTNRKNYPCIPMLHTIDKFYSILYIRMLPTSDKFYIRV*CDHTSCPTFYMRSTHTKIWE 237
           +H+  K Y C     T     S+++ R L T +K Y    CD       Y+ + HT+I  
Sbjct: 547 LHSGEKPYKCNECGKTFSHKPSLVHHRRLHTGEKSYKCTVCDKAFVRNSYL-ARHTRIHT 605

Query: 238 IGKNVNSLQTGQ------RKILHHRSYS 303
             K     + G+      +  LHHR ++
Sbjct: 606 AEKPYKCNECGKAFNQQSQLSLHHRIHA 633

>ASCD_YERPS (Q66DP5) CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase|
           reductase (CDP-6-deoxy-delta-3,4-glucoseen reductase)
           (EC 1.17.1.-) (E3)
          Length = 328

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 25  LEKEAQWYLSMIHTNRKNYPC-IPMLHTIDKFYSILYIRMLPTSDKFYI 168
           +E +  +Y  + H  +K YPC +  +  + +  +IL +R+ PT+   Y+
Sbjct: 82  IELDVNYYPELSHIQKKTYPCKLDSIEFVGEDIAILSLRLPPTAKIQYL 130

>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460)
          Length = 4128

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 246  FTYFPDFCVCTPHVKCWAACVVALNPNIKLIRCGQHTDVKDGIKLID 106
            F++FP F  C   + C  A +++L+P      C        GI+L++
Sbjct: 2848 FSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLE 2894

>PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1457

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 214 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 324
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 222 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 258

>HCP_THIFE (P96095) Hydroxylamine reductase (EC 1.7.-.-) (Hybrid-cluster|
           protein) (HCP)
          Length = 556

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 147 GQHTDVKDGIKLIDCVQHGDARIVFPVG 64
           G HT +    K++D V+HGD R  F VG
Sbjct: 378 GHHTLLGVADKIVDAVKHGDIRHFFLVG 405

>PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1439

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 214 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 324
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 223 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,991,896
Number of Sequences: 219361
Number of extensions: 1500906
Number of successful extensions: 3563
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3560
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)