ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_005647.2| Homo sapiens transducin (beta)-like 1X-linked (... 42 0.10
2emb|Y12781.1|HSTBL1 Homo sapiens mRNA for transducin (beta) like... 42 0.10
3gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswel... 42 0.10
4ref|XM_480356.1| Oryza sativa (japonica cultivar-group), mRNA 38 1.6
5ref|XM_507147.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 1.6
6emb|AL596322.3| Human DNA sequence from clone RP11-31D17 on chro... 38 1.6
7gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, comp... 38 1.6
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
9dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
10dbj|AK072269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.6
11dbj|AK070877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.6
12gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 m... 38 1.6
13gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome... 38 1.6
14gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome ... 38 1.6
15gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome... 36 6.2
16gb|AC159285.3| Mus musculus BAC clone RP23-306M13 from chromosom... 36 6.2
17gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosom... 36 6.2
18gb|AC163657.3| Mus musculus BAC clone RP24-302A24 from chromosom... 36 6.2
19gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome... 36 6.2
20gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 36 6.2
21ref|XM_383783.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 36 6.2
22emb|AJ421514.1|LHI421514 Lactobacillus hilgardii arcA gene, arcB... 36 6.2
23emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chro... 36 6.2
24gb|AY789466.1|AY789466S1 Manduca sexta prophenoloxidase-activati... 36 6.2
25emb|BX537307.6| Zebrafish DNA sequence from clone CH211-227H20 i... 36 6.2
26gb|AC087507.7| Homo sapiens chromosome 18, clone RP11-748I20, co... 36 6.2
27gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, comple... 36 6.2
28gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8)... 36 6.2
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.2
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.2
31gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosom... 36 6.2
32gb|AC009804.2| Homo sapiens 12 BAC RP11-411G2 (Roswell Park Canc... 36 6.2
33dbj|AK103748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 36 6.2
34gb|AC104632.10| Mus musculus strain C57BL/6J clone rp23-368d24 m... 36 6.2
35dbj|AP000866.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 36 6.2
36emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chr... 36 6.2
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 36 6.2
38gb|AC132327.3| Mus musculus BAC clone RP24-194O6 from 3, complet... 36 6.2
39emb|AL732492.11| Mouse DNA sequence from clone RP23-307C17 on ch... 36 6.2 
>ref|NM_005647.2| Homo sapiens transducin (beta)-like 1X-linked (TBL1X), mRNA
          Length = 5886

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 6    aaaacatggtgaggaatgcct 26
            |||||||||||||||||||||
Sbjct: 5214 aaaacatggtgaggaatgcct 5234
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>emb|Y12781.1|HSTBL1 Homo sapiens mRNA for transducin (beta) like 1 protein
          Length = 5887

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 6    aaaacatggtgaggaatgcct 26
            |||||||||||||||||||||
Sbjct: 5215 aaaacatggtgaggaatgcct 5235
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>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC
             library) complete sequence
          Length = 123203

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaaacatggtgaggaatgcct 26
             |||||||||||||||||||||
Sbjct: 37061 aaaacatggtgaggaatgcct 37041
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>ref|XM_480356.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1743

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 10   catggtgaggaatgcctgccccatgac 36
            |||||||||||| |||||||| |||||
Sbjct: 1411 catggtgaggaacgcctgcccgatgac 1385
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>ref|XM_507147.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1120_C08.22 mRNA
          Length = 2059

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 10   catggtgaggaatgcctgccccatgac 36
            |||||||||||| |||||||| |||||
Sbjct: 1411 catggtgaggaacgcctgcccgatgac 1385
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>emb|AL596322.3| Human DNA sequence from clone RP11-31D17 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 129044

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    aggaatgcctgccccatga 35
             |||||||||||||||||||
Sbjct: 13163 aggaatgcctgccccatga 13145
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>gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, complete sequence
          Length = 179499

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    aggaatgcctgccccatga 35
             |||||||||||||||||||
Sbjct: 82103 aggaatgcctgccccatga 82085
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 10      catggtgaggaatgcctgccccatgac 36
               |||||||||||| |||||||| |||||
Sbjct: 4576497 catggtgaggaacgcctgcccgatgac 4576471
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>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1120_C08
          Length = 150300

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 10     catggtgaggaatgcctgccccatgac 36
              |||||||||||| |||||||| |||||
Sbjct: 100345 catggtgaggaacgcctgcccgatgac 100319
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>dbj|AK072269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008O22, full
            insert sequence
          Length = 1743

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 10   catggtgaggaatgcctgccccatgac 36
            |||||||||||| |||||||| |||||
Sbjct: 1411 catggtgaggaacgcctgcccgatgac 1385
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>dbj|AK070877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065C06, full
            insert sequence
          Length = 2059

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 10   catggtgaggaatgcctgccccatgac 36
            |||||||||||| |||||||| |||||
Sbjct: 1411 catggtgaggaacgcctgcccgatgac 1385
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>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence
          Length = 209784

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 25     ctgccccatgaccaaagggaaaa 47
              |||||||| ||||||||||||||
Sbjct: 127886 ctgccccaggaccaaagggaaaa 127908
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>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 25    ctgccccatgaccaaagggaaaa 47
             |||||||| ||||||||||||||
Sbjct: 34943 ctgccccaggaccaaagggaaaa 34965
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>gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome 8, complete sequence
          Length = 228830

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 25     ctgccccatgaccaaagggaaaa 47
              |||||||| ||||||||||||||
Sbjct: 200736 ctgccccaggaccaaagggaaaa 200758
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>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence
          Length = 200560

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    aggaatgcctgccccatg 34
             ||||||||||||||||||
Sbjct: 52794 aggaatgcctgccccatg 52777
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>gb|AC159285.3| Mus musculus BAC clone RP23-306M13 from chromosome 8, complete sequence
          Length = 231778

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     aaaacatggtgaggaatg 23
             ||||||||||||||||||
Sbjct: 88819 aaaacatggtgaggaatg 88836
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>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete
             sequence
          Length = 210568

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    catgaccaaagggaaaaa 48
             ||||||||||||||||||
Sbjct: 80725 catgaccaaagggaaaaa 80742
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>gb|AC163657.3| Mus musculus BAC clone RP24-302A24 from chromosome 1, complete sequence
          Length = 197913

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     aggaatgcctgccccatg 34
              ||||||||||||||||||
Sbjct: 117616 aggaatgcctgccccatg 117599
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>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11,
             complete sequence
          Length = 133352

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     ggcaaaacatggtgagga 20
             ||||||||||||||||||
Sbjct: 72898 ggcaaaacatggtgagga 72881
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    catgaccaaagggaaaaa 48
             ||||||||||||||||||
Sbjct: 65171 catgaccaaagggaaaaa 65188
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>ref|XM_383783.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03607.1)
            partial mRNA
          Length = 2481

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   ccatgaccaaagggaaaa 47
            ||||||||||||||||||
Sbjct: 2105 ccatgaccaaagggaaaa 2088
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>emb|AJ421514.1|LHI421514 Lactobacillus hilgardii arcA gene, arcB gene and arcC gene
          Length = 4756

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 11   atggtgaggaatgcctgc 28
            ||||||||||||||||||
Sbjct: 2218 atggtgaggaatgcctgc 2201
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>emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chromosome 11 Contains the
              Stc2 gene for stanniocalcin 2 and three CpG islands,
              complete sequence
          Length = 252980

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 15     tgaggaatgcctgcccca 32
              ||||||||||||||||||
Sbjct: 210658 tgaggaatgcctgcccca 210641
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>gb|AY789466.1|AY789466S1 Manduca sexta prophenoloxidase-activating proteinase-3 (PAP-3) gene,
            exon 1
          Length = 5845

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 5    caaaacatggtgaggaat 22
            ||||||||||||||||||
Sbjct: 5391 caaaacatggtgaggaat 5374
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>emb|BX537307.6| Zebrafish DNA sequence from clone CH211-227H20 in linkage group 10,
             complete sequence
          Length = 99161

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 30    ccatgaccaaagggaaaa 47
             ||||||||||||||||||
Sbjct: 80147 ccatgaccaaagggaaaa 80164
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>gb|AC087507.7| Homo sapiens chromosome 18, clone RP11-748I20, complete sequence
          Length = 129457

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     ggggcaaaacatggtgag 18
             ||||||||||||||||||
Sbjct: 43368 ggggcaaaacatggtgag 43385
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>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence
          Length = 166595

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     ccatgaccaaagggaaaa 47
              ||||||||||||||||||
Sbjct: 137039 ccatgaccaaagggaaaa 137056
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>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    ccccatgaccaaagggaa 45
             ||||||||||||||||||
Sbjct: 83449 ccccatgaccaaagggaa 83466
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 31       catgaccaaagggaaaaa 48
                ||||||||||||||||||
Sbjct: 16424572 catgaccaaagggaaaaa 16424589
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 3        ggcaaaacatggtgagga 20
                ||||||||||||||||||
Sbjct: 26048137 ggcaaaacatggtgagga 26048120
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>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete
             sequence
          Length = 206798

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    aggaatgcctgccccatg 34
             ||||||||||||||||||
Sbjct: 38714 aggaatgcctgccccatg 38731
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>gb|AC009804.2| Homo sapiens 12 BAC RP11-411G2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 140151

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    catggtgaggaatgcctg 27
             ||||||||||||||||||
Sbjct: 50988 catggtgaggaatgcctg 51005
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>dbj|AK103748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033142D19, full
           insert sequence
          Length = 926

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  catgaccaaagggaaaaa 48
           ||||||||||||||||||
Sbjct: 535 catgaccaaagggaaaaa 552
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>gb|AC104632.10| Mus musculus strain C57BL/6J clone rp23-368d24 map 3, complete sequence
          Length = 210499

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 15     tgaggaatgcctgcccca 32
              ||||||||||||||||||
Sbjct: 110714 tgaggaatgcctgcccca 110731
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>dbj|AP000866.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-677M14, complete
              sequence
          Length = 187960

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     catggtgaggaatgcctg 27
              ||||||||||||||||||
Sbjct: 171521 catggtgaggaatgcctg 171538
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>emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chromosome 2, complete
              sequence
          Length = 192154

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     gccccatgaccaaaggga 44
              ||||||||||||||||||
Sbjct: 157095 gccccatgaccaaaggga 157112
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 31       catgaccaaagggaaaaa 48
                ||||||||||||||||||
Sbjct: 16515576 catgaccaaagggaaaaa 16515593
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>gb|AC132327.3| Mus musculus BAC clone RP24-194O6 from 3, complete sequence
          Length = 174267

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 15     tgaggaatgcctgcccca 32
              ||||||||||||||||||
Sbjct: 155721 tgaggaatgcctgcccca 155704
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>emb|AL732492.11| Mouse DNA sequence from clone RP23-307C17 on chromosome 4, complete
              sequence
          Length = 166942

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 25     ctgccccatgaccaaagggaaa 46
              |||||||| |||||||||||||
Sbjct: 127081 ctgccccaggaccaaagggaaa 127060


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 468,815
Number of Sequences: 3902068
Number of extensions: 468815
Number of successful extensions: 106048
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105890
Number of HSP's gapped (non-prelim): 158
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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