ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 105 1e-19
2dbj|AB236018.1| Oryza environmental sample genomic DNA, clone: 1... 105 1e-19
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4dbj|AK104359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
5dbj|AK070732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
6dbj|AK065326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
7emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 105 1e-19
8emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 105 1e-19
9ref|XM_473273.1| Oryza sativa (japonica cultivar-group), predic... 100 7e-18
10ref|XM_466971.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
11ref|XM_506883.1| PREDICTED Oryza sativa (japonica cultivar-group... 82 2e-12
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
13dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
14dbj|AK105980.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
15dbj|AK071904.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
18emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa... 76 1e-10
19emb|Z83827.1|HS473J6 Human DNA sequence from clone RP3-473J6 on ... 42 1.5
20gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, com... 40 5.9
21gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.9
22gb|DQ504427.1| Homo sapiens DNA cross-link repair 1C (PSO2 homol... 40 5.9
23ref|XM_548232.2| PREDICTED: Canis familiaris similar to Peripher... 40 5.9
24ref|XM_547070.2| PREDICTED: Canis familiaris similar to apolipop... 40 5.9
25ref|XM_663202.1| Cryptosporidium hominis TU502 vacuolar protein ... 40 5.9
26gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, comp... 40 5.9
27emb|AL592046.7| Human DNA sequence from clone RP11-155O24 on chr... 40 5.9
28emb|AL360083.27| Human DNA sequence from clone RP11-2K17 on chro... 40 5.9
29emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chro... 40 5.9
30emb|AL049651.2|HSJ753D10 Human DNA sequence from clone RP4-753D1... 40 5.9
31gb|AC166325.1| Mus musculus BAC clone RP24-421O23 from chromosom... 40 5.9
32gb|AC153993.23| Mus musculus 6 BAC RP24-568N16 (Roswell Park Can... 40 5.9
33emb|AL645904.13| Mouse DNA sequence from clone RP23-121P11 on ch... 40 5.9
34emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 ... 40 5.9
35emb|AL646002.6| Mouse DNA sequence from clone RP23-237P10 on chr... 40 5.9
36gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 5.9
37gb|AC154257.2| Mus musculus BAC clone RP24-211E15 from chromosom... 40 5.9
38gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete ... 40 5.9
39emb|AL845314.10| Zebrafish DNA sequence from clone CH211-153N11 ... 40 5.9
40emb|BX000362.6| Zebrafish DNA sequence from clone DKEYP-93D12 in... 40 5.9
41gb|AF034084.1|AF034084 Esox lucius arylalkylamine N-acetyltransf... 40 5.9
42dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.9
43emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chro... 40 5.9
44gb|AC153996.3| Mus musculus 6 BAC RP24-385J11 (Roswell Park Canc... 40 5.9
45dbj|AP000161.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 5.9
46dbj|AP000019.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 5.9
47dbj|AP001425.1| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 40 5.9 
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                         
Query: 337   tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
             |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 43154 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 43213

                                                  
Query: 397   ggtgcagggacctctccacctccatctgctgcctcct 433
             | ||||| |||||||| || |||||||| || |||||
Sbjct: 43214 gatgcagtgacctctcaacttccatctgatgtctcct 43250
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>dbj|AB236018.1| Oryza environmental sample genomic DNA, clone: 1B4-2
          Length = 363

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 337 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
           |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 317 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 258

                                                
Query: 397 ggtgcagggacctctccacctccatctgctgcctcct 433
           | ||||| |||||||| || |||||||| || |||||
Sbjct: 257 gatgcagtgacctctcaacttccatctgatgtctcct 221
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                            
Query: 337      tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
                |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 26506267 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 26506326

                                                     
Query: 397      ggtgcagggacctctccacctccatctgctgcctcct 433
                | ||||| |||||||| || |||||||| || |||||
Sbjct: 26506327 gatgcagtgacctctcaacttccatctgatgtctcct 26506363
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>dbj|AK104359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B09, full
           insert sequence
          Length = 1153

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 337 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
           |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 976 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 917

                                                
Query: 397 ggtgcagggacctctccacctccatctgctgcctcct 433
           | ||||| |||||||| || |||||||| || |||||
Sbjct: 916 gatgcagtgacctctcaacttccatctgatgtctcct 880
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>dbj|AK070732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I18, full
            insert sequence
          Length = 1220

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                        
Query: 337  tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
            |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 1037 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 978

                                                 
Query: 397  ggtgcagggacctctccacctccatctgctgcctcct 433
            | ||||| |||||||| || |||||||| || |||||
Sbjct: 977  gatgcagtgacctctcaacttccatctgatgtctcct 941
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>dbj|AK065326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F03, full
            insert sequence
          Length = 3579

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                        
Query: 337  tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
            |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 2655 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 2596

                                                 
Query: 397  ggtgcagggacctctccacctccatctgctgcctcct 433
            | ||||| |||||||| || |||||||| || |||||
Sbjct: 2595 gatgcagtgacctctcaacttccatctgatgtctcct 2559
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>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete
            sequence
          Length = 40167

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                        
Query: 337  tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
            |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 5087 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 5146

                                                 
Query: 397  ggtgcagggacctctccacctccatctgctgcctcct 433
            | ||||| |||||||| || |||||||| || |||||
Sbjct: 5147 gatgcagtgacctctcaacttccatctgatgtctcct 5183
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                          
Query: 337    tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 396
              |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 146907 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 146966

                                                   
Query: 397    ggtgcagggacctctccacctccatctgctgcctcct 433
              | ||||| |||||||| || |||||||| || |||||
Sbjct: 146967 gatgcagtgacctctcaacttccatctgatgtctcct 147003
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>ref|XM_473273.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 762

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                       
Query: 344 tcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatctggtgcag 403
           ||||||||||||||| |||| ||||||||| || |||||||||||||||||||| |||||
Sbjct: 762 tcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatctgatgcag 703

                                         
Query: 404 ggacctctccacctccatctgctgcctcct 433
            |||||||| || |||||||| || |||||
Sbjct: 702 tgacctctcaacttccatctgatgtctcct 673
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>ref|XM_466971.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1462

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 381  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 429
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1186 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1138
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>ref|XM_506883.1| PREDICTED Oryza sativa (japonica cultivar-group), P0010C01.23-1 mRNA
          Length = 2039

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 381  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 429
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1701 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1653
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                                 
Query: 381      aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 429
                ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 25690383 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 25690431
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>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0010C01
          Length = 186185

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                              
Query: 381   aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 429
             ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 93059 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 93107
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>dbj|AK105980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F11, full
            insert sequence
          Length = 2038

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 381  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 429
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1701 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1653
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>dbj|AK071904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063D05, full
            insert sequence
          Length = 1462

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 381  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 429
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1185 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1137
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                           
Query: 360     cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 419
               |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct: 2682661 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 2682720

                             
Query: 420     atctgctgcctcct 433
               |||||||| |||||
Sbjct: 2682721 atctgctgtctcct 2682734
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                           
Query: 360     cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 419
               |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct: 2682605 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 2682664

                             
Query: 420     atctgctgcctcct 433
               |||||||| |||||
Sbjct: 2682665 atctgctgtctcct 2682678
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>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151878

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                         
Query: 360   cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 419
             |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct: 51587 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 51646

                           
Query: 420   atctgctgcctcct 433
             |||||||| |||||
Sbjct: 51647 atctgctgtctcct 51660
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>emb|Z83827.1|HS473J6 Human DNA sequence from clone RP3-473J6 on chromosome Xq21.1, complete
             sequence
          Length = 135686

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 99    gaatgagaattgcatttcacctcca 123
             |||||||||||| ||||||||||||
Sbjct: 29818 gaatgagaattggatttcacctcca 29794
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>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence
          Length = 208274

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    cacaaacacaaagaggaaga 387
              ||||||||||||||||||||
Sbjct: 182985 cacaaacacaaagaggaaga 183004
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
              sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 229    aacacctattcatcagtatcttgccttc 256
              ||||| |||| |||||||||||||||||
Sbjct: 117390 aacacatatttatcagtatcttgccttc 117363
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>gb|DQ504427.1| Homo sapiens DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae)
            (DCLRE1C) gene, complete cds
          Length = 50007

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  agtatatcatgccttccaatatat 296
            |||||||||||| |||||||||||
Sbjct: 6424 agtatatcatgcattccaatatat 6401
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>ref|XM_548232.2| PREDICTED: Canis familiaris similar to Peripheral-type benzodiazepine
            receptor-associated protein 1 (PRAX-1) (Peripheral
            benzodiazepine receptor interacting protein) (PBR-IP)
            (RIM binding protein 1) (RIM-BP1) (LOC491112), mRNA
          Length = 5424

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 410  ctccacctccatctgctgcctcct 433
            ||||||||||| ||||||||||||
Sbjct: 1116 ctccacctccagctgctgcctcct 1093
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>ref|XM_547070.2| PREDICTED: Canis familiaris similar to apolipoprotein B48 receptor
            (LOC489950), mRNA
          Length = 3654

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 394  tctggtgcagggacctctcc 413
            ||||||||||||||||||||
Sbjct: 1814 tctggtgcagggacctctcc 1795
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>ref|XM_663202.1| Cryptosporidium hominis TU502 vacuolar protein sorting-associated
           protein (Chro.30060) partial mRNA
          Length = 13242

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 416 ctccatctgctgcctccttagccg 439
           ||||||||||||||||||| ||||
Sbjct: 919 ctccatctgctgcctcctttgccg 896
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>gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, complete sequence
          Length = 175181

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cacaaacacaaagaggaaga 387
             ||||||||||||||||||||
Sbjct: 25284 cacaaacacaaagaggaaga 25303
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>emb|AL592046.7| Human DNA sequence from clone RP11-155O24 on chromosome X Contains part
             of the gene for upstream regulatory element binding
             protein 1 (UREB1) and a CpG island, complete sequence
          Length = 86196

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   agaggaagaaccagatctgg 398
             ||||||||||||||||||||
Sbjct: 27748 agaggaagaaccagatctgg 27767
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>emb|AL360083.27| Human DNA sequence from clone RP11-2K17 on chromosome 10 Contains the
             3' end of the gene for suppressor of variegation 3-9
             (Drosophila) homolog 2; hypothetical protein FLJ23414
             (SUV39H2)(FLJ23414), the DCLRE1C gene for DNA cross-link
             repair 1C (PSO2 homolog, S.cerevisiae) (SCIDA, SNM1C,
             ARTEMIS, RS-SCID,DCLREC1C, FLJ11360), the gene for a novel
             protein similar to mouse Meig1 (Meg1)(meiosis expressed
             gene 1), a novel gene, a seven transmembrane receptor
             (Rhodopsin family) pseudogene and two CpG islands,
             complete sequence
          Length = 94963

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   agtatatcatgccttccaatatat 296
             |||||||||||| |||||||||||
Sbjct: 50043 agtatatcatgcattccaatatat 50066
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>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2
             Contains the gene for TED protein (TED),  the 5' end of
             the ED1 gene for ectodermal dysplasia 1, anhidrotic, two
             novel genes and three CpG islands, complete sequence
          Length = 186538

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   accattccttaccctctctt 213
             ||||||||||||||||||||
Sbjct: 28324 accattccttaccctctctt 28343
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>emb|AL049651.2|HSJ753D10 Human DNA sequence from clone RP4-753D10 on chromosome 20 Contains the
             SSTR4 gene for somatostatin receptor 4, the THBD gene for
             thrombomodulin, two novel genes and two CpG islands,
             complete sequence
          Length = 97912

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   catattacaagcatgatttacccg 153
             ||||||| ||||||||||||||||
Sbjct: 61238 catattaaaagcatgatttacccg 61215
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>gb|AC166325.1| Mus musculus BAC clone RP24-421O23 from chromosome 13, complete sequence
          Length = 192167

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ccgttaacacttaacagcat 191
              ||||||||||||||||||||
Sbjct: 163618 ccgttaacacttaacagcat 163599
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>gb|AC153993.23| Mus musculus 6 BAC RP24-568N16 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 188187

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   ttctttttcctcgagaagca 273
             ||||||||||||||||||||
Sbjct: 10588 ttctttttcctcgagaagca 10607
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>emb|AL645904.13| Mouse DNA sequence from clone RP23-121P11 on chromosome 11 Contains
           the gene for a novel protein (1700121K02Rik), the Hnrph1
           gene for heterogeneous nuclear ribonucleoprotein H1, the
           Rufy1 gene for RUN and FYVE domain containing 1, a novel
           pseudogene and three CpG islands, complete sequence
          Length = 193696

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 ccttaccctctcttcatcac 219
           ||||||||||||||||||||
Sbjct: 428 ccttaccctctcttcatcac 447
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>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24,
             complete sequence
          Length = 159582

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   agcagacacaacaccacaaacaca 377
             ||||||||||||||||||| ||||
Sbjct: 25137 agcagacacaacaccacaagcaca 25160
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>emb|AL646002.6| Mouse DNA sequence from clone RP23-237P10 on chromosome 11 Contains gene
              D930008C07Rik, the Canx gene for calnexin, a high mobility
              group nucleosomal binding domain 2 (Hmgn2) pseudogene and
              two CpG islands, complete sequence
          Length = 113907

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    ccttaccctctcttcatcac 219
              ||||||||||||||||||||
Sbjct: 112335 ccttaccctctcttcatcac 112354
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 379     agaggaagaaccagatctgg 398
               ||||||||||||||||||||
Sbjct: 1681800 agaggaagaaccagatctgg 1681819
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>gb|AC154257.2| Mus musculus BAC clone RP24-211E15 from chromosome 13, complete
             sequence
          Length = 152267

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   ccgttaacacttaacagcat 191
             ||||||||||||||||||||
Sbjct: 42033 ccgttaacacttaacagcat 42014
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>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence
          Length = 189392

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    agaggaagaaccagatctgg 398
              ||||||||||||||||||||
Sbjct: 133597 agaggaagaaccagatctgg 133616
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>emb|AL845314.10| Zebrafish DNA sequence from clone CH211-153N11 in linkage group 20,
              complete sequence
          Length = 179498

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    catattacaagcatgattta 149
              ||||||||||||||||||||
Sbjct: 132776 catattacaagcatgattta 132795
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>emb|BX000362.6| Zebrafish DNA sequence from clone DKEYP-93D12 in linkage group 20,
             complete sequence
          Length = 205186

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   catattacaagcatgattta 149
             ||||||||||||||||||||
Sbjct: 65624 catattacaagcatgattta 65643
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>gb|AF034084.1|AF034084 Esox lucius arylalkylamine N-acetyltransferase (AANAT1) gene,
           partial cds
          Length = 519

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 aaccattccttaccctctct 212
           ||||||||||||||||||||
Sbjct: 39  aaccattccttaccctctct 20
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>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   cctccatctgctgcctcctt 434
             ||||||||||||||||||||
Sbjct: 44491 cctccatctgctgcctcctt 44472
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>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete
              sequence
          Length = 205436

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     catgacttaggcaagacaag 99
              ||||||||||||||||||||
Sbjct: 174218 catgacttaggcaagacaag 174199
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>gb|AC153996.3| Mus musculus 6 BAC RP24-385J11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155517

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ttctttttcctcgagaagca 273
             ||||||||||||||||||||
Sbjct: 33158 ttctttttcctcgagaagca 33139
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>dbj|AP000161.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 13/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   cctccatctgctgcctcctt 434
             ||||||||||||||||||||
Sbjct: 30908 cctccatctgctgcctcctt 30889
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>dbj|AP000019.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 10/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   cctccatctgctgcctcctt 434
             ||||||||||||||||||||
Sbjct: 65304 cctccatctgctgcctcctt 65285
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>dbj|AP001425.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S440, LB7T-ERG
             region, complete sequence
          Length = 60193

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   cctccatctgctgcctcctt 434
             ||||||||||||||||||||
Sbjct: 25323 cctccatctgctgcctcctt 25304


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,360,691
Number of Sequences: 3902068
Number of extensions: 5360691
Number of successful extensions: 95438
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95229
Number of HSP's gapped (non-prelim): 209
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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