ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSP74_TRYBB (P11145) Heat shock 70 kDa protein 4 (HSP70) 31 1.3
2HSP70_LEIAM (Q07437) Heat shock 70 kDa protein 29 3.7
3HSP70_LEIMA (P14834) Heat shock 70 kDa protein (Fragment) 29 3.7
4HSP70_LEIDO (P17804) Heat shock 70 kDa protein 29 3.7
5DAPA_RICFE (Q4ULR2) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 6.4
6HSP70_TRYCR (P05456) Heat shock 70 kDa protein 28 8.3
7YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III 28 8.3

>HSP74_TRYBB (P11145) Heat shock 70 kDa protein 4 (HSP70)|
          Length = 661

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 381 GGKSKDASWKEHHGGHRLDGGAVD-GEKKKQGMMTALINSNVQVINNSLMLHSSCSGGDP 205
           GGKSK        G   LD   +  G +   G+MTALI  N  +      + S+ S   P
Sbjct: 385 GGKSKQTE-----GLLLLDVAPLTLGIETAGGVMTALIKRNTTIPTKKSQIFSTYSDNQP 439

Query: 204 GVHLKL 187
           GVH+++
Sbjct: 440 GVHIQV 445



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>HSP70_LEIAM (Q07437) Heat shock 70 kDa protein|
          Length = 652

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 291 GMMTALINSNVQVINNSLMLHSSCSGGDPGVHLKL 187
           G+MTALI  N  +      + S+ +   PGVH+++
Sbjct: 411 GVMTALIKRNTTIPTKKSQIFSTYADNQPGVHIQV 445



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>HSP70_LEIMA (P14834) Heat shock 70 kDa protein (Fragment)|
          Length = 516

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 291 GMMTALINSNVQVINNSLMLHSSCSGGDPGVHLKL 187
           G+MTALI  N  +      + S+ +   PGVH+++
Sbjct: 411 GVMTALIKRNTTIPTKKSQIFSTYADNQPGVHIQV 445



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>HSP70_LEIDO (P17804) Heat shock 70 kDa protein|
          Length = 653

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 291 GMMTALINSNVQVINNSLMLHSSCSGGDPGVHLKL 187
           G+MTALI  N  +      + S+ +   PGVH+++
Sbjct: 410 GVMTALIKRNTTIPTKKSQIFSTYADNQPGVHIQV 444



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>DAPA_RICFE (Q4ULR2) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 276 LINSNVQVINNSLMLHSSCSGGDPGVHLKLSAKST 172
           L+ ++V+++NN + + S CS  +     +L+A+ST
Sbjct: 61  LLQTSVEIVNNRIPIISGCSSNNTAYARELAAEST 95



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>HSP70_TRYCR (P05456) Heat shock 70 kDa protein|
          Length = 680

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 291 GMMTALINSNVQVINNSLMLHSSCSGGDPGVHLKL 187
           G+MT+LI  N  +      + S+ +   PGVH+++
Sbjct: 411 GVMTSLIKRNTTIPTKKSQIFSTYADNQPGVHIQV 445



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>YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III|
          Length = 1008

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = -3

Query: 390 KVGGGKSKDASWKEHHGG-HRLDGGAVDGEKKKQGMMTALINSNVQVINNSLMLHSSCSG 214
           K+G GKSK  S K +    H  +  A  G              NV   + S  +  S   
Sbjct: 20  KLGFGKSKGKSHKSNTSSIHERENTAAKGPASN----VRPARPNVSTSSTSNEVRKSVPV 75

Query: 213 GDPGVHLKLSAKSTP 169
           G+P VH K  + S+P
Sbjct: 76  GNPTVHTKTGSSSSP 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,091,056
Number of Sequences: 219361
Number of extensions: 626484
Number of successful extensions: 2154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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