ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25a04 |
|---|---|
| Clone Library Name | barley_pub |
>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Apoptosis-associated nuclear protein) (Proline- and histidine-rich protein) (Proline- and glutamine-rich protein) (PQ-rich protein) Length = 259 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 93 HPGPDSGPN*SPYTQTEHKHPSPNGLHKPDLQKRSIPPS*HGLKLKANTT 242 HP P S P+ P+ H HP P+ + P Q S P HG +L +T+ Sbjct: 213 HPHPHSHPHSHPHP---HPHPHPHQIPHPHPQPHSQP---HGHRLLRSTS 256
>Y943_METJA (Q58353) Hypothetical protein MJ0943| Length = 417 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/69 (23%), Positives = 34/69 (49%) Frame = +1 Query: 31 NAQQ*TNTQRARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLTGFTNRTFKNDQSLHL 210 N NT++ N + N+NN+++ K + S +++ + N+ KN ++ L Sbjct: 40 NTNNGENTEKPINQENQNVNNVEN----------KKESQSTQNIQSYENKEIKNQENHPL 89 Query: 211 DTDLNLKQT 237 ++ N +QT Sbjct: 90 QSNQNYEQT 98
>ISPZ_HAEDU (Q7VKZ1) Probable intracellular septation protein| Length = 183 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -1 Query: 176 FVKPVR*RMLVFSLGIRASVWSRVR-SWMLFKFICLLLRAL 57 F KPV +L L + VW+R+ W +F IC+L+ + Sbjct: 96 FHKPVVKMLLAKELSLPTQVWNRLNLGWAIFFIICMLINII 136
>SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-box protein SMC3)| Length = 1230 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 85 LNNIQDLTLDQTEARIPKLNTSIRHLTGFTNRTFKN 192 +N+ D+T DQ R+ +NT I L R F+N Sbjct: 966 VNDFSDITSDQLLQRLNDMNTEISGLKNVNKRAFEN 1001
>MUKB_ERWCT (Q6D447) Chromosome partition protein mukB (Structural maintenance| of chromosome-related protein) Length = 1479 Score = 28.5 bits (62), Expect = 4.7 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Frame = +1 Query: 10 KSLISRDNAQQ*TNTQRARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLTGFTNRTFK 189 K LIS + + R N ++I+L+ +L D +R + RH+ T + Sbjct: 260 KHLISEATSYVAADYMRHANERRIHLDGALELRRDLFSSRKQLSSEQYRHVEMARELTEQ 319 Query: 190 NDQSLHLDTD-------LNLKQT 237 ND L+TD LNL QT Sbjct: 320 NDTEGDLETDYQAASDHLNLVQT 342
>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)| Length = 463 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +3 Query: 81 KLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHKPDLQKRSIPPS 209 K +QHP P+ SP Q +HPSPN P ++ P S Sbjct: 126 KQQQHPSPNQQQPPSPNQQ---QHPSPNQQQHPSPNQQQHPNS 165
>TRUB_LEGPA (Q5X1C5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 303 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +1 Query: 67 NNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165 NN+ L+ +QD+ L Q A + ++ +I+HLT Sbjct: 210 NNRMYTLDELQDMPLSQRLACLIPIDQAIQHLT 242
>VTS1_CANGA (Q6FM94) Protein VTS1| Length = 549 Score = 28.1 bits (61), Expect = 6.1 Identities = 18/72 (25%), Positives = 29/72 (40%) Frame = +1 Query: 13 SLISRDNAQQ*TNTQRARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLTGFTNRTFKN 192 S +S DN Q N+ NN N NN + NT + L + + N Sbjct: 178 SFLSHDNTMQPNNSSNNNNNNNQNANNSLN------------FNTDVNQLCTWMSMLTAN 225 Query: 193 DQSLHLDTDLNL 228 QS+ +D +++ Sbjct: 226 QQSVVMDNIISV 237
>TRUB_LEGPL (Q5WT38) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 303 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 67 NNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165 NN+ L+ +QD+ L Q A + ++ +++HLT Sbjct: 210 NNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242
>TRUB_LEGPH (Q5ZRV6) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 303 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 67 NNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165 NN+ L+ +QD+ L Q A + ++ +++HLT Sbjct: 210 NNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242
>CRK_XENLA (P87378) SH2/SH3 adaptor crk (Adapter molecule crk) (CRK2)| Length = 296 Score = 27.7 bits (60), Expect = 8.0 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = +3 Query: 78 NKLKQHPGPDSGPN*SPYTQTEHKHPSPN 164 N+ HP P GP PY Q P PN Sbjct: 197 NQENSHPQPLGGPEPGPYAQPSVNTPLPN 225
>COBL6_ARATH (O04500) COBRA-like protein 6 precursor| Length = 454 Score = 27.7 bits (60), Expect = 8.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -2 Query: 142 SVWVYGLQFGPESGPGCCLSLFAYYY 65 +V VY QF P CC+SL A+YY Sbjct: 217 AVCVYS-QFRSSPSPKCCVSLSAFYY 241
>PXA1_YEAST (P41909) Peroxisomal long-chain fatty acid import protein 2| (Peroxisomal ABC transporter 1) Length = 758 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +1 Query: 64 RNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLTGFTNRTFKNDQSLHLDTDLN 225 +N K+ +N L+L +R+ I LTG+TNR F LH LN Sbjct: 368 KNMKEFIVNKRLMLSLADAGSRLMHSIKDISQLTGYTNRIFTLLSVLHRVHSLN 421 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,619,210 Number of Sequences: 219361 Number of extensions: 820321 Number of successful extensions: 2062 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2023 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2061 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
