ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
2dbj|AK064301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
4dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
5ref|NM_190405.1| Oryza sativa (japonica cultivar-group), predic... 149 8e-33
6emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in ... 44 0.35
7emb|BX530029.5| Zebrafish DNA sequence from clone CH211-153J15 i... 44 0.35
8gb|DQ398941.1| Mesorhizobium loti binding protein dependent tran... 42 1.4
9dbj|D86954.1| Cricetulus griseus mRNA for Cytochrome P-450 2A14,... 42 1.4
10dbj|AB035867.1| Cricetulus griseus CYP2A17 mRNA for cytochrome P... 42 1.4
11gb|AC134429.3| Mus musculus BAC clone RP24-344D20 from chromosom... 40 5.5
12emb|AL356481.16| Human DNA sequence from clone RP11-216B9 on chr... 40 5.5
13emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit) 40 5.5
14gb|AC132087.4| Mus musculus BAC clone RP24-407J14 from 9, comple... 40 5.5
15emb|AL627183.16| Mouse DNA sequence from clone RP23-345H2 on chr... 40 5.5 
>dbj|AK102220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L14, full
            insert sequence
          Length = 1580

 Score =  159 bits (80), Expect = 9e-36
 Identities = 113/124 (91%)
 Strand = Plus / Minus

                                                                        
Query: 290  gccgttgatggagctcatgacgttggaagcaatggcgatgctgctcgtgatcactgccag 349
            |||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 1365 gccgctgatggagctcatgacgttggaggcgatggcgatgctgctcgtgatcacggccag 1306

                                                                        
Query: 350  agtgatcatcatcgctgccattgccttgtctttcctcttcgctatcccatgaacatccct 409
            || ||||||| ||||||||| ||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 1305 agcgatcatcgtcgctgccaatgccttgtccttcgtctttgctatcccatgagcatccct 1246

                
Query: 410  gaga 413
            ||||
Sbjct: 1245 gaga 1242
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>dbj|AK064301.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B03, full
            insert sequence
          Length = 1467

 Score =  159 bits (80), Expect = 9e-36
 Identities = 113/124 (91%)
 Strand = Plus / Minus

                                                                        
Query: 290  gccgttgatggagctcatgacgttggaagcaatggcgatgctgctcgtgatcactgccag 349
            |||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 1079 gccgctgatggagctcatgacgttggaggcgatggcgatgctgctcgtgatcacggccag 1020

                                                                        
Query: 350  agtgatcatcatcgctgccattgccttgtctttcctcttcgctatcccatgaacatccct 409
            || ||||||| ||||||||| ||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 1019 agcgatcatcgtcgctgccaatgccttgtccttcgtctttgctatcccatgagcatccct 960

                
Query: 410  gaga 413
            ||||
Sbjct: 959  gaga 956
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 5e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                            
Query: 290      gccgttgatggagctcatgacgttggaagcaatggcgatgctgctcgtgatcactgccag 349
                |||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 35314487 gccgctgatggagctcatgacgttggaggcgatggcgatgctgctcgtgatcacggccag 35314546

                                                                            
Query: 350      agtgatcatcatcgctgccattgccttgtctttcctcttcgctatcccatgaacatccct 409
                || ||||||| ||||||||| ||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 35314547 agcgatcatcgtcgctgccaatgccttgtccttcgtctttgctatcccatgagcatccct 35314606

                 
Query: 410      g 410
                |
Sbjct: 35314607 g 35314607
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>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E11
          Length = 146083

 Score =  153 bits (77), Expect = 5e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                         
Query: 290   gccgttgatggagctcatgacgttggaagcaatggcgatgctgctcgtgatcactgccag 349
             |||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 78348 gccgctgatggagctcatgacgttggaggcgatggcgatgctgctcgtgatcacggccag 78407

                                                                         
Query: 350   agtgatcatcatcgctgccattgccttgtctttcctcttcgctatcccatgaacatccct 409
             || ||||||| ||||||||| ||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 78408 agcgatcatcgtcgctgccaatgccttgtccttcgtctttgctatcccatgagcatccct 78467

              
Query: 410   g 410
             |
Sbjct: 78468 g 78468
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>ref|NM_190405.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1377

 Score =  149 bits (75), Expect = 8e-33
 Identities = 108/119 (90%)
 Strand = Plus / Minus

                                                                        
Query: 290  gccgttgatggagctcatgacgttggaagcaatggcgatgctgctcgtgatcactgccag 349
            |||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 1348 gccgctgatggagctcatgacgttggaggcgatggcgatgctgctcgtgatcacggccag 1289

                                                                       
Query: 350  agtgatcatcatcgctgccattgccttgtctttcctcttcgctatcccatgaacatccc 408
            || ||||||| ||||||||| ||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 1288 agcgatcatcgtcgctgccaatgccttgtccttcgtctttgctatcccatgagcatccc 1230
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>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17,
            complete sequence
          Length = 170138

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 236  aaactgtaagtactgtacatgc 257
            ||||||||||||||||||||||
Sbjct: 1036 aaactgtaagtactgtacatgc 1057
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>emb|BX530029.5| Zebrafish DNA sequence from clone CH211-153J15 in linkage group 17,
              complete sequence
          Length = 155612

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 236    aaactgtaagtactgtacatgc 257
              ||||||||||||||||||||||
Sbjct: 154648 aaactgtaagtactgtacatgc 154669
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>gb|DQ398941.1| Mesorhizobium loti binding protein dependent transporter gene,
           partial cds
          Length = 584

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 322 tggcgatgctgctcgtgatca 342
           |||||||||||||||||||||
Sbjct: 502 tggcgatgctgctcgtgatca 522
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>dbj|D86954.1| Cricetulus griseus mRNA for Cytochrome P-450 2A14, complete cds
          Length = 1755

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 296 gatggagctcatgacgttgga 316
           |||||||||||||||||||||
Sbjct: 575 gatggagctcatgacgttgga 555
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>dbj|AB035867.1| Cricetulus griseus CYP2A17 mRNA for cytochrome P450 2A17, complete
           cds
          Length = 1746

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 296 gatggagctcatgacgttgga 316
           |||||||||||||||||||||
Sbjct: 571 gatggagctcatgacgttgga 551
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>gb|AC134429.3| Mus musculus BAC clone RP24-344D20 from chromosome 9, complete sequence
          Length = 180602

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tttagctctataataaaact 240
              ||||||||||||||||||||
Sbjct: 162916 tttagctctataataaaact 162935
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>emb|AL356481.16| Human DNA sequence from clone RP11-216B9 on chromosome 9 Contains the
             3' end of the GLE1L gene for GLE1 RNA export mediator-like
             (yeast),  the SPTAN1 gene for spectrin, alpha,
             non-erythrocytic 1 (alpha-fodrin) ((ALPHA)II-SPECTRIN),  a
             novel gene (MGC20486), a pseudogene similar to part of
             vesicle transport through interaction with t-SNAREs
             homolog 1B (yeast) (VTI1B), two novel genes, the 5' end of
             the SET gene for SET translocation (myeloid
             leukemia-associated) (2PP2A, I2PP2A, PHAPII, TAF-IBETA)
             and three CpG islands, complete sequence
          Length = 175666

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    aatgtatgccaactgttttataca 71
             |||||| |||||||||||||||||
Sbjct: 63599 aatgtaagccaactgttttataca 63622
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>emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)
          Length = 481

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 78  gccgactgccatctgctagctgtt 101
           |||| |||||||||||||||||||
Sbjct: 116 gccgcctgccatctgctagctgtt 93
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>gb|AC132087.4| Mus musculus BAC clone RP24-407J14 from 9, complete sequence
          Length = 169174

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tttagctctataataaaact 240
             ||||||||||||||||||||
Sbjct: 24211 tttagctctataataaaact 24230
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>emb|AL627183.16| Mouse DNA sequence from clone RP23-345H2 on chromosome 4, complete
             sequence
          Length = 216153

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   ctataataaaactgtaagta 247
             ||||||||||||||||||||
Sbjct: 21040 ctataataaaactgtaagta 21021


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,332,007
Number of Sequences: 3902068
Number of extensions: 3332007
Number of successful extensions: 59689
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59652
Number of HSP's gapped (non-prelim): 37
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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