ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25a02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084H09, complete sequence Length = 130151 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 412 ggccagcgtccccgacacgacgtccttcaccgcggcgctggcgaac 457 ||||||||||||||| |||| ||||| |||||||||| ||||||| Sbjct: 81110 ggccagcgtccccgatacgatgtcctccaccgcggcggcggcgaac 81155 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 205 catcacccgtggcttcccccacccgaagt 233 |||| ||| |||||||||||||||||||| Sbjct: 80903 catcgcccatggcttcccccacccgaagt 80931
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 412 ggccagcgtccccgacacgacgtccttcaccgcggcgctggcgaac 457 ||||||||||||||| |||| ||||| |||||||||| ||||||| Sbjct: 4109448 ggccagcgtccccgatacgatgtcctccaccgcggcggcggcgaac 4109493 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 205 catcacccgtggcttcccccacccgaagt 233 |||| ||| |||||||||||||||||||| Sbjct: 4109241 catcgcccatggcttcccccacccgaagt 4109269
>dbj|AK104889.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C12, full insert sequence Length = 1440 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 412 ggccagcgtccccgacacgacgtccttcaccgcggcgctggcgaac 457 ||||||||||||||| |||| ||||| |||||||||| ||||||| Sbjct: 949 ggccagcgtccccgatacgatgtcctccaccgcggcggcggcgaac 904 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 catcacccgtggcttcccccacccgaagt 233 |||| ||| |||||||||||||||||||| Sbjct: 1156 catcgcccatggcttcccccacccgaagt 1128
>dbj|AK099589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043H09, full insert sequence Length = 1493 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 412 ggccagcgtccccgacacgacgtccttcaccgcggcgctggcgaac 457 ||||||||||||||| |||| ||||| |||||||||| ||||||| Sbjct: 976 ggccagcgtccccgatacgatgtcctccaccgcggcggcggcgaac 931 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 catcacccgtggcttcccccacccgaagt 233 |||| ||| |||||||||||||||||||| Sbjct: 1183 catcgcccatggcttcccccacccgaagt 1155
>dbj|AK060023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H06, full insert sequence Length = 1442 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 412 ggccagcgtccccgacacgacgtccttcaccgcggcgctggcgaac 457 ||||||||||||||| |||| ||||| |||||||||| ||||||| Sbjct: 972 ggccagcgtccccgatacgatgtcctccaccgcggcggcggcgaac 927 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 catcacccgtggcttcccccacccgaagt 233 |||| ||| |||||||||||||||||||| Sbjct: 1179 catcgcccatggcttcccccacccgaagt 1151
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 412 ggccagcgtccccgacacgacgtccttcaccgcggcgctggcgaac 457 ||||||||||||||| |||| ||||| |||||||||| ||||||| Sbjct: 4118142 ggccagcgtccccgatacgatgtcctccaccgcggcggcggcgaac 4118187 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 205 catcacccgtggcttcccccacccgaagt 233 |||| ||| |||||||||||||||||||| Sbjct: 4117935 catcgcccatggcttcccccacccgaagt 4117963
>emb|AL354758.14| Human DNA sequence from clone RP11-29P12 on chromosome 9, complete sequence Length = 92625 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 12 ttttatttaaaaataaaagaatatatga 39 ||||||||||||||||| |||||||||| Sbjct: 65419 ttttatttaaaaataaaggaatatatga 65392
>gb|DQ158858.1| Bigelowiella natans nucleomorph chromosome 3, partial sequence Length = 98136 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 14 ttatttaaaaataaaagaatata 36 ||||||||||||||||||||||| Sbjct: 85641 ttatttaaaaataaaagaatata 85619
>gb|AC183919.2| Pan troglodytes BAC clone CH251-691O9 from chromosome 7, complete sequence Length = 188947 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatatat 37 |||||||||||||||||||||| Sbjct: 108667 atttaaaaataaaagaatatat 108646
>gb|AC092439.4| Homo sapiens BAC clone RP11-385C9 from 7, complete sequence Length = 35550 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatatat 37 |||||||||||||||||||||| Sbjct: 17376 atttaaaaataaaagaatatat 17355
>gb|AY364535.1| Homo sapiens coagulation factor V (proaccelerin, labile factor) (F5) gene, complete cds Length = 75774 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 ttatttaaaaataaaagaatat 35 |||||||||||||||||||||| Sbjct: 7716 ttatttaaaaataaaagaatat 7695
>emb|Z99572.1|HS86F14 Human DNA sequence from clone RP1-86F14 on chromosome 1q23-24 Contains the F5 gene for coagulation factor V (proaccelerin labile factor) and the 3' end of the SELP gene for selectin P (granule membrane protein 140kDa antigen CD62), complete sequence Length = 106571 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 ttatttaaaaataaaagaatat 35 |||||||||||||||||||||| Sbjct: 93800 ttatttaaaaataaaagaatat 93821
>emb|AL513318.8| Human DNA sequence from clone RP11-276H19 on chromosome 9 Contains the 3' end of a novel gene, a novel pseudogene, CDC20 pseudogene, and a nuclear transcription factor Y, gamma (HSM, CBFC, HAP5) (NFYC) pseudogene, complete sequence Length = 153292 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 gaaacctcttttatttaaaaat 25 |||||||||||||||||||||| Sbjct: 41529 gaaacctcttttatttaaaaat 41508
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatatat 37 |||||||||||||||||||||| Sbjct: 2019725 atttaaaaataaaagaatatat 2019704
>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome Length = 641454 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 11 cttttatttaaaaataaaagaa 32 |||||||||||||||||||||| Sbjct: 634319 cttttatttaaaaataaaagaa 634298
>gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence Length = 170283 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 tcttttatttaaaaataaaaga 31 |||||||||||||||||||||| Sbjct: 44255 tcttttatttaaaaataaaaga 44234
>gb|AF210071.1|AF210071 Tsuga heterophylla dirigent-like protein (psd_Th1) mRNA, complete cds Length = 948 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 cttttatttaaaaataaaagaa 32 |||||||||||||||||||||| Sbjct: 899 cttttatttaaaaataaaagaa 920
>gb|AF008210.1|AF008210 Buchnera aphidicola genomic fragment containing (chaperone Hsp60) groEL, DNA biosynthesis initiating protein (dnaA), ATP operon (atpCDGAHFEB), and putative chromosome replication protein (gidA) genes, complete cds; and termination factor Rho (rho) gene, partial cds Length = 34699 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 cttttatttaaaaataaaagaa 32 |||||||||||||||||||||| Sbjct: 27959 cttttatttaaaaataaaagaa 27980
>gb|AC122752.10| Mus musculus chromosome 8, clone RP24-358A6, complete sequence Length = 155477 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ctcttttatttaaaaataaaa 29 ||||||||||||||||||||| Sbjct: 153905 ctcttttatttaaaaataaaa 153925
>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence Length = 230236 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 ctcttttatttaaaaataaaa 29 ||||||||||||||||||||| Sbjct: 222719 ctcttttatttaaaaataaaa 222699
>gb|U13642.1| Caenorhabditis elegans cosmid ZC395, complete sequence Length = 28883 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 cttttatttaaaaataaaagaatat 35 |||||||||||||| |||||||||| Sbjct: 1378 cttttatttaaaaaaaaaagaatat 1402
>gb|AC122224.4| Mus musculus BAC clone RP23-130L16 from chromosome 9, complete sequence Length = 200246 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 ctcttttatttaaaaataaaa 29 ||||||||||||||||||||| Sbjct: 186373 ctcttttatttaaaaataaaa 186353
>ref|XM_974961.1| PREDICTED: Mus musculus procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III (P4ha3), mRNA Length = 1863 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 cgcccgcccttggccgcctcc 331 ||||||||||||||||||||| Sbjct: 131 cgcccgcccttggccgcctcc 111
>gb|AC118000.14| Mus musculus chromosome 3, clone RP23-33M9, complete sequence Length = 167218 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 tatttaaaaataaaagaatatatga 39 |||||||||||||||| |||||||| Sbjct: 22005 tatttaaaaataaaagtatatatga 22029
>gb|AC121984.3| Mus musculus BAC clone RP24-292L23 from chromosome 3, complete sequence Length = 145348 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 tatttaaaaataaaagaatatatga 39 |||||||||||||||| |||||||| Sbjct: 52930 tatttaaaaataaaagtatatatga 52906
>gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome 1, complete sequence Length = 213412 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 taaaaataaaagaatatatga 39 ||||||||||||||||||||| Sbjct: 22342 taaaaataaaagaatatatga 22322
>gb|AC122269.4| Mus musculus chromosome 7 clone RP23-220G20, complete sequence Length = 166529 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 cgcccgcccttggccgcctcc 331 ||||||||||||||||||||| Sbjct: 63887 cgcccgcccttggccgcctcc 63867
>emb|AL391500.13| Human DNA sequence from clone RP11-707M13 on chromosome 6 Contains a novel pseudogene and an ADH5 (alcohol dehydrogenase 5 (class III) chi polypeptide) pseudogene, complete sequence Length = 171220 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 124650 aaacctcttttatttaaaaat 124630
>emb|AL445238.12| Human DNA sequence from clone RP11-394A14 on chromosome 13 Contains a protein phosphatase 1, regulatory (inhibitor) subunit 2 (PPP1R2) pseudogene, a novel gene and an olfactory receptor pseudogene, complete sequence Length = 174801 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ttttatttaaaaataaaagaa 32 ||||||||||||||||||||| Sbjct: 128061 ttttatttaaaaataaaagaa 128081
>emb|AL390966.14| Human DNA sequence from clone RP11-155I19 on chromosome X, complete sequence Length = 160942 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 48785 aaacctcttttatttaaaaat 48765
>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence Length = 253924 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 tttatttaaaaataaaagaatatat 37 |||||||||||| |||||||||||| Sbjct: 30895 tttatttaaaaaaaaaagaatatat 30919
>gb|AC087262.2| Rattus norvegicus strain Brown Norway clone RP31-151E23, complete sequence Length = 132809 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ttttatttaaaaataaaagaa 32 ||||||||||||||||||||| Sbjct: 11460 ttttatttaaaaataaaagaa 11480
>emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393J16 on chromosome 10 Contains a zinc finger protein pseudogene, the ZNF25 gene for zinc finger protein 25 (KOX 19), the 5' end of the ZNF33A gene for zinc finger protein 33a (KOX 31) and two CpG islands, complete sequence Length = 161452 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaaa 29 ||||||||||| ||||||||||||| Sbjct: 17306 aaacctcttttctttaaaaataaaa 17330
>emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in linkage group 13, complete sequence Length = 219709 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 acctcttttatttaaaaataaaaga 31 |||||||||||||||||| |||||| Sbjct: 148034 acctcttttatttaaaaaaaaaaga 148010
>emb|BX927279.15| Zebrafish DNA sequence from clone CH211-101N16 in linkage group 13, complete sequence Length = 182020 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 ctcttttatttaaaaataaaa 29 ||||||||||||||||||||| Sbjct: 53730 ctcttttatttaaaaataaaa 53710
>gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complete sequence Length = 151389 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 81035 aaacctcttttatttaaaaat 81055
>gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, complete sequence Length = 128335 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 aaaaataaaagaatatatgat 40 ||||||||||||||||||||| Sbjct: 90888 aaaaataaaagaatatatgat 90908
>gb|AY052772.1| Caenorhabditis elegans HAM-1-like protein (hap-1) mRNA, complete cds Length = 655 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 cttttatttaaaaataaaagaatat 35 |||||||||||||| |||||||||| Sbjct: 625 cttttatttaaaaaaaaaagaatat 649
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ttttatttaaaaataaaagaa 32 ||||||||||||||||||||| Sbjct: 139971 ttttatttaaaaataaaagaa 139951
>ref|NM_065720.2| Caenorhabditis elegans yeast HAM (HydroxylAminoPurine sensitivity) related family member (hap-1) (hap-1) mRNA, complete cds Length = 655 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 cttttatttaaaaataaaagaatat 35 |||||||||||||| |||||||||| Sbjct: 625 cttttatttaaaaaaaaaagaatat 649
>gb|AC066611.6|AC066611 Homo sapiens chromosome 15 clone RP11-348P16 map 15q21.3, complete sequence Length = 184355 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 138935 aaacctcttttatttaaaaat 138915
>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence Length = 176008 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 116256 aaacctcttttatttaaaaat 116236
>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence Length = 132623 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 66473 aaacctcttttatttaaaaat 66453
>gb|AC104842.4| Homo sapiens BAC clone RP11-544D5 from 2, complete sequence Length = 150622 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 122143 aaacctcttttatttaaaaat 122163
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 caccctgctcgcgacggaggc 414 ||||||||||||||||||||| Sbjct: 365662 caccctgctcgcgacggaggc 365642
>gb|AC118060.4| Homo sapiens BAC clone RP11-16O5 from 2, complete sequence Length = 30101 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaaa 29 |||||||||||||||||||| |||| Sbjct: 12231 aaacctcttttatttaaaaagaaaa 12207
>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete sequence Length = 312283 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaaa 29 ||||||||||| ||||||||||||| Sbjct: 96814 aaacctcttttctttaaaaataaaa 96838
>gb|AC134787.6| Mus musculus chromosome 1, clone RP24-477E13, complete sequence Length = 150960 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 taaaaataaaagaatatatga 39 ||||||||||||||||||||| Sbjct: 64673 taaaaataaaagaatatatga 64693
>dbj|AP001591.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-838I13, complete sequence Length = 178982 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatata 36 ||||||||||||||||||||| Sbjct: 18207 atttaaaaataaaagaatata 18187
>gb|AC145743.4| Mus musculus BAC clone RP24-171K11 from 3, complete sequence Length = 174136 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 tatttaaaaataaaagaatatatga 39 |||||||||||||||| |||||||| Sbjct: 67016 tatttaaaaataaaagtatatatga 66992
>emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12 Length = 260050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 gcagctcgtcgtcgagctgct 380 ||||||||||||||||||||| Sbjct: 62734 gcagctcgtcgtcgagctgct 62714
>emb|AL935040.6| Zebrafish DNA sequence from clone CH211-176L21, complete sequence Length = 159468 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaaa 29 |||||| |||||||||||||||||| Sbjct: 123630 aaaccttttttatttaaaaataaaa 123606
>gb|AC022294.15| Homo sapiens 3 BAC RP11-4B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153940 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 49184 aaacctcttttatttaaaaat 49164
>dbj|AP002350.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2552C2 Length = 109381 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaat 25 ||||||||||||||||||||| Sbjct: 13816 aaacctcttttatttaaaaat 13836
>gb|AY549196.1| Streptomyces tubercidicus cytochrome P450 monooxygenase CYP107Z7 (ema17) gene, complete cds Length = 2668 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 cagcagctcgtcgtcgagctgctc 381 ||||||||||||| |||||||||| Sbjct: 1258 cagcagctcgtcggcgagctgctc 1235
>gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosome 8, complete sequence Length = 207917 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 79974 ttaaaaataaaagaatatat 79993
>gb|AC158141.8| Mus musculus chromosome 5, clone RP23-281M20, complete sequence Length = 220396 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttttatttaaaaataaaaga 31 |||||||||||||||||||| Sbjct: 125114 ttttatttaaaaataaaaga 125095
>gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaa 24 |||||||||||||||||||| Sbjct: 49451 aaacctcttttatttaaaaa 49470
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 2598028 tcttttatttaaaaataaaa 2598047
>gb|AC101831.7| Mus musculus chromosome 15, clone RP24-491D12, complete sequence Length = 129818 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 3559 tcttttatttaaaaataaaa 3578
>gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, complete sequence Length = 183930 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaa 24 |||||||||||||||||||| Sbjct: 110178 aaacctcttttatttaaaaa 110197
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttatttaaaaataaaaga 31 |||||||||||||||||||| Sbjct: 919023 ttttatttaaaaataaaaga 919042
>gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromosome 2, complete sequence Length = 211457 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 206936 aaacctcttttattaaaaaataaa 206959
>gb|AC120085.5| Rattus norvegicus 10 BAC CH230-490B8 (Children's Hospital Oakland Research Institute) complete sequence Length = 157493 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tttatttaaaaataaaagaa 32 |||||||||||||||||||| Sbjct: 123223 tttatttaaaaataaaagaa 123242
>gb|AC168278.2| Mus musculus BAC RP24-83C9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 247493 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 atcacaacctagcatgtact 58 |||||||||||||||||||| Sbjct: 27552 atcacaacctagcatgtact 27533
>gb|AC125124.4| Mus musculus BAC clone RP24-273N19 from chromosome 16, complete sequence Length = 188199 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 ttatttaaaaataaaagaatatat 37 ||||||||||||||||||| |||| Sbjct: 121095 ttatttaaaaataaaagaaaatat 121118
>gb|AY176327.1| Staphylococcus phage K, complete genome Length = 127395 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttatttaaaaataaaaga 31 |||||||||||||||||||| Sbjct: 80918 ttttatttaaaaataaaaga 80937
>gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complete sequence Length = 205216 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatat 35 |||||||||||||||||||| Sbjct: 145526 atttaaaaataaaagaatat 145507
>gb|AC112791.3| Mus musculus BAC clone RP23-182O1 from 13, complete sequence Length = 208443 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tttatttaaaaataaaagaa 32 |||||||||||||||||||| Sbjct: 98716 tttatttaaaaataaaagaa 98697
>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence Length = 168415 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttttatttaaaaataaaaga 31 |||||||||||||||||||| Sbjct: 68430 ttttatttaaaaataaaaga 68411
>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence Length = 178111 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaa 24 |||||||||||||||||||| Sbjct: 38507 aaacctcttttatttaaaaa 38526
>gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence Length = 259603 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 92188 ttaaaaataaaagaatatat 92169
>emb|BX664727.7| Human DNA sequence from clone RP11-146D12 on chromosome 9 Contains the 3' end of a novel gene similar to ankyrin repeat domain 20A (ANKRD20A), a novel zinc finger pseudogene, a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1), a melanoma antigen (LOC51152) pseudogene and three novel genes, complete sequence Length = 105929 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 103512 aaacctcttttattaaaaaataaa 103535
>emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chromosome 9 Contains a calponin 2 (CNN2) pseudogene, a novel zinc finger pseudogene, a pseudogene similar to part of cytochrome P450, subfamily IVF, a chromosome 2 open reading frame 14 (C2orf14) pseudogene, a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1), a melanoma antigen (LOC51152) pseudogene, four novel pseudogenes and an ankyrin repeat domain 20A (ANKRD20A) pseudogene, complete sequence Length = 149891 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 11611 aaacctcttttattaaaaaataaa 11588
>emb|AL669942.7| Human DNA sequence from clone RP11-399F4 on chromosome 9 Contains two novel psuedogenes, a calponin 2 (CNN2) psuedogene and a novel gene, complete sequence Length = 87140 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 72186 aaacctcttttattaaaaaataaa 72163
>emb|AL591441.11| Human DNA sequence from clone RP11-459O16 on chromosome 9 Contains a novel pseudogene (LOC283464), a calponin 2 (CNN2) pseudogene, a novel zinc finger protein pseudogene, a pseudogene similar to part of cytochrome P450 family protein, a novel pseudogene, a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1) and a melanoma antigen (LOC51152) pseudogene, complete sequence Length = 162441 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 113403 aaacctcttttattaaaaaataaa 113380
>emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on chromosome 10 Contains the gene for a novel OTU-like cysteine protease domain containing protein (LOC220213) and a CpG island, complete sequence Length = 182917 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttatttaaaaataaaaga 31 |||||||||||||||||||| Sbjct: 141941 ttttatttaaaaataaaaga 141960
>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a nicotinamide nucleotide adenylyltransferase 1 (NMNAT1) pseudogene and a high-mobility group box 3 (HMGB3) pseudogene, complete sequence Length = 184024 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatat 35 |||||||||||||||||||| Sbjct: 101522 atttaaaaataaaagaatat 101503
>emb|AL357333.14| Human DNA sequence from clone RP11-699H2 on chromosome 10 Contains part of the gene for VPS10 domain receptor protein SORCS 1, complete sequence Length = 87039 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cctcttttatttaaaaataa 27 |||||||||||||||||||| Sbjct: 8332 cctcttttatttaaaaataa 8313
>gb|AC079271.4| Homo sapiens chromosome 10 clone RP11-455I1, complete sequence Length = 200476 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cctcttttatttaaaaataa 27 |||||||||||||||||||| Sbjct: 92212 cctcttttatttaaaaataa 92231
>emb|AL137244.28| Human DNA sequence from clone RP11-173B14 on chromosome 13 Contains 2 novel genes, the UCHL3 gene for ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), the 5' end of the LMO7 gene for LIM domain only 7 (KIAA0858) and 2 CpG islands, complete sequence Length = 183358 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tttaaaaataaaagaatata 36 |||||||||||||||||||| Sbjct: 44666 tttaaaaataaaagaatata 44685
>emb|AL132774.20|HSDJ402L9 Human DNA sequence from clone RP3-402L9 on chromosome 6q25-26.1 Contains the 3' end of the OPRM1 gene for opiate receptor, mu 1 (MOR-1) and the 3' end of the gene for phosphoinositide-binding protein PIP3-E (KIAA0403), complete sequence Length = 98104 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 51652 tcttttatttaaaaataaaa 51671
>emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 on chromosome 11p13 Contains the RCN1 gene for EF-hand calcium binding domain protein reticulocalbin 1, a seudogene similar to part of EIF4A (Eukaryotic Initiation Factor 4A), ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 94497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaa 24 |||||||||||||||||||| Sbjct: 48319 aaacctcttttatttaaaaa 48300
>gb|AC162364.6| Mus musculus chromosome 15, clone RP24-117M19, complete sequence Length = 164862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 79610 tcttttatttaaaaataaaa 79629
>gb|AC166741.1| Brassica rapa subsp. pekinensis clone KBrH080C09, complete sequence Length = 132099 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 88540 tcttttatttaaaaataaaa 88521
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 2583975 tcttttatttaaaaataaaa 2583994
>gb|AY993270.1| Uncultured bacterium clone C21_l21 16S ribosomal RNA gene, partial sequence Length = 1345 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 975 gtctctgcccgcgtcatctcccgt 952
>gb|AY993259.1| Uncultured bacterium clone C21_l09 16S ribosomal RNA gene, partial sequence Length = 1345 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 992 gtctctgcccgcgtcatctcccgt 969
>gb|AY993216.1| Uncultured bacterium clone C21_j11 16S ribosomal RNA gene, partial sequence Length = 1346 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 976 gtctctgcccgcgtcatctcccgt 953
>gb|AY992416.1| Uncultured bacterium clone C23_c18 16S ribosomal RNA gene, partial sequence Length = 1351 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 981 gtctctgcccgcgtcatctcccgt 958
>gb|AY991992.1| Uncultured bacterium clone C20_o16 16S ribosomal RNA gene, partial sequence Length = 1349 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 979 gtctctgcccgcgtcatctcccgt 956
>gb|AY991873.1| Uncultured bacterium clone C20_i16 16S ribosomal RNA gene, partial sequence Length = 1335 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 975 gtctctgcccgcgtcatctcccgt 952
>gb|AY990212.1| Uncultured bacterium clone C12_N08 16S ribosomal RNA gene, partial sequence Length = 1284 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 953 gtctctgcccgcgtcatctcccgt 930
>gb|AY990182.1| Uncultured bacterium clone C12_H16 16S ribosomal RNA gene, partial sequence Length = 1286 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 955 gtctctgcccgcgtcatctcccgt 932
>gb|AY990122.1| Uncultured bacterium clone C12_K18 16S ribosomal RNA gene, partial sequence Length = 1285 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 953 gtctctgcccgcgtcatctcccgt 930
>gb|AY990100.1| Uncultured bacterium clone C12_G14 16S ribosomal RNA gene, partial sequence Length = 1287 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 956 gtctctgcccgcgtcatctcccgt 933
>gb|AY990079.1| Uncultured bacterium clone C12_C06 16S ribosomal RNA gene, partial sequence Length = 1284 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 954 gtctctgcccgcgtcatctcccgt 931
>gb|AY989975.1| Uncultured bacterium clone C12_M15 16S ribosomal RNA gene, partial sequence Length = 1283 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gtctctgcccgcgtcatcacccgt 214 |||||||||||||||||| ||||| Sbjct: 951 gtctctgcccgcgtcatctcccgt 928
>emb|AL604031.10| Mouse DNA sequence from clone RP23-24O5 on chromosome 11 Contains a ribosomal protein L13 (Rpl13) pseudogene, a novel gene and two CpG islands, complete sequence Length = 215675 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 aaataaaagaatatatgatc 41 |||||||||||||||||||| Sbjct: 135855 aaataaaagaatatatgatc 135836
>emb|AL161513.2|ATCHRIV25 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 25 Length = 179771 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 92868 ttaaaaataaaagaatatat 92849
>emb|AL137070.9| Human DNA sequence from clone RP11-251O17 on chromosome 9 Contains 2 calponin 2 (CNN2) pseudogenes, a gene for a novel protein similar to aquaporin 7 (AQP7), part of gene for a novel protein similar to methylenetetrahydrofolate dehydrogenase(NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase (MTHFD1) and a CpG island, complete sequence Length = 170237 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 4955 aaacctcttttattaaaaaataaa 4978
>emb|AJ003222.1|BBAJ3222 Borrelia burgdorferi flgK, flbF, thdF, gidA, gidB, moxR, orf1, orf2, orf3, orf4 and orf5 genes Length = 10479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 1184 ttaaaaataaaagaatatat 1165
>emb|CR759927.12| Zebrafish DNA sequence from clone CH211-196C10 in linkage group 8, complete sequence Length = 205716 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atttaaaaataaaagaatat 35 |||||||||||||||||||| Sbjct: 69852 atttaaaaataaaagaatat 69871
>emb|CR859240.1| Pongo pygmaeus mRNA; cDNA DKFZp459K071 (from clone DKFZp459K071) Length = 4447 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ccgaaacctcttttatttaa 21 |||||||||||||||||||| Sbjct: 4315 ccgaaacctcttttatttaa 4334
>emb|CR859715.1| Pongo pygmaeus mRNA; cDNA DKFZp469I146 (from clone DKFZp469I146) Length = 4572 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ccgaaacctcttttatttaa 21 |||||||||||||||||||| Sbjct: 4439 ccgaaacctcttttatttaa 4458
>emb|BX511029.9| Zebrafish DNA sequence from clone DKEY-18H21 in linkage group 3, complete sequence Length = 151867 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 8698 tcttttatttaaaaataaaa 8717
>emb|BX530071.7| Zebrafish DNA sequence from clone CH211-189P14 in linkage group 10, complete sequence Length = 148539 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 145655 tcttttatttaaaaataaaa 145674
>gb|AC128639.13| Papio anubis clone rp41-2d18, complete sequence Length = 173331 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 67678 tcttttatttaaaaataaaa 67697
>gb|AC026712.7| Homo sapiens chromosome 5 clone CTD-2121K20, complete sequence Length = 112085 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 ||||||||||| |||||||||||| Sbjct: 40550 aaacctcttttttttaaaaataaa 40573
>gb|AC022132.6| Homo sapiens chromosome 5 clone CTD-2201J22, complete sequence Length = 112085 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 ||||||||||| |||||||||||| Sbjct: 40550 aaacctcttttttttaaaaataaa 40573
>gb|AC009989.12| Homo sapiens chromosome 10 clone RP11-7P17, complete sequence Length = 175690 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 150930 tcttttatttaaaaataaaa 150949
>gb|AC098866.3| Homo sapiens BAC clone RP11-404F3 from 4, complete sequence Length = 144290 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ttatttaaaaataaaagaat 33 |||||||||||||||||||| Sbjct: 115246 ttatttaaaaataaaagaat 115265
>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence Length = 150214 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ccgaaacctcttttatttaa 21 |||||||||||||||||||| Sbjct: 25236 ccgaaacctcttttatttaa 25217
>gb|AC098648.2| Homo sapiens chromosome 3 clone RP11-240N7, complete sequence Length = 151924 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 agcatgtactatgctggttt 68 |||||||||||||||||||| Sbjct: 81775 agcatgtactatgctggttt 81794
>gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, complete sequence Length = 137716 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tatttaaaaataaaagaata 34 |||||||||||||||||||| Sbjct: 48482 tatttaaaaataaaagaata 48463
>gb|AC008768.8| Homo sapiens chromosome 5 clone CTD-2005G16, complete sequence Length = 139111 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 ||||||||||| |||||||||||| Sbjct: 83304 aaacctcttttttttaaaaataaa 83327
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 acagtctctgcccgcgtcat 207 |||||||||||||||||||| Sbjct: 4983679 acagtctctgcccgcgtcat 4983660
>gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-32i15, complete sequence Length = 96221 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tatttaaaaataaaagaata 34 |||||||||||||||||||| Sbjct: 34492 tatttaaaaataaaagaata 34473
>gb|U23440.1|TTU23440 Tetrahymena thermophila RP internal deletion sequence Length = 2779 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 2455 ttaaaaataaaagaatatat 2436
>ref|XM_396799.2| PREDICTED: Apis mellifera similar to ENSANGP00000011464 (LOC413354), mRNA Length = 2240 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gcgtcatatatgggcagatg 255 |||||||||||||||||||| Sbjct: 27 gcgtcatatatgggcagatg 46
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 220 cccccacccgaagttggcgtcatatatgggca 251 |||||||||||||| |||||| || ||||||| Sbjct: 15197832 cccccacccgaagtcggcgtcgtagatgggca 15197863
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctcgtcgtcgagctgctccg 383 |||||||||||||||||||| Sbjct: 1805428 ctcgtcgtcgagctgctccg 1805447
>gb|AC007809.8|AC007809 Drosophila melanogaster, chromosome 3R, region 88C-88C, BAC clone BACR45M03, complete sequence Length = 183439 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ttatttaaaaataaaagaat 33 |||||||||||||||||||| Sbjct: 129526 ttatttaaaaataaaagaat 129507
>gb|AC020717.3|AC020717 Homo sapiens BAC clone RP11-451L9 from Xq23, complete sequence Length = 166434 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 ||||||||||| |||||||||||| Sbjct: 36790 aaacctcttttctttaaaaataaa 36813
>gb|AC073464.5| Homo sapiens BAC clone RP11-134N21 from 2, complete sequence Length = 168862 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 87279 aaacctcttttattaaaaaataaa 87256
>gb|AE000783.1| Borrelia burgdorferi B31, complete genome Length = 910724 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 182967 ttaaaaataaaagaatatat 182986
>gb|AY954969.1| Bacteriophage G1, complete genome Length = 138715 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttatttaaaaataaaaga 31 |||||||||||||||||||| Sbjct: 46096 ttttatttaaaaataaaaga 46115
>gb|AC016691.10| Homo sapiens BAC clone RP11-85B19 from 2, complete sequence Length = 181737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tcttttatttaaaaataaaa 29 |||||||||||||||||||| Sbjct: 101535 tcttttatttaaaaataaaa 101516
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 220 cccccacccgaagttggcgtcatatatgggca 251 |||||||||||||| |||||| || ||||||| Sbjct: 91808 cccccacccgaagtcggcgtcgtagatgggca 91839
>gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete sequence Length = 165359 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 ttttatttaaaaataaaagaatat 35 ||||||||||||| |||||||||| Sbjct: 115927 ttttatttaaaaaaaaaagaatat 115904
>dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full insert sequence Length = 1707 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 220 cccccacccgaagttggcgtcatatatgggca 251 |||||||||||||| |||||| || ||||||| Sbjct: 1235 cccccacccgaagtcggcgtcgtagatgggca 1204
>dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D08, full insert sequence Length = 1706 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 220 cccccacccgaagttggcgtcatatatgggca 251 |||||||||||||| |||||| || ||||||| Sbjct: 1234 cccccacccgaagtcggcgtcgtagatgggca 1203
>gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 146781 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 atcacaacctagcatgtact 58 |||||||||||||||||||| Sbjct: 78397 atcacaacctagcatgtact 78416
>gb|AE003705.3| Drosophila melanogaster chromosome 3R, section 43 of 118 of the complete sequence Length = 216741 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ttatttaaaaataaaagaat 33 |||||||||||||||||||| Sbjct: 169257 ttatttaaaaataaaagaat 169238
>gb|AF128396.1|T3H13 Arabidopsis thaliana BAC T3H13 Length = 118737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 59162 ttaaaaataaaagaatatat 59143
>gb|AC118680.7| Mus musculus chromosome 8, clone RP24-381G7, complete sequence Length = 188031 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tttatttaaaaataaaagaa 32 |||||||||||||||||||| Sbjct: 118299 tttatttaaaaataaaagaa 118318
>gb|AC158785.5| Mus musculus chromosome 8, clone RP23-182G15, complete sequence Length = 208815 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tttatttaaaaataaaagaa 32 |||||||||||||||||||| Sbjct: 9910 tttatttaaaaataaaagaa 9929
>dbj|AP002387.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-660L16, complete sequence Length = 170523 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 ||||||||||| |||||||||||| Sbjct: 922 aaacctcttttctttaaaaataaa 945
>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete sequence Length = 189998 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 57810 ttaaaaataaaagaatatat 57829
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 362 agctcgtcgtcgagctgctccgtcgtgg 389 |||||| |||||| |||||||||||||| Sbjct: 92307 agctcggcgtcgacctgctccgtcgtgg 92280
>emb|AL929025.14| Mouse DNA sequence from clone RP23-288B11 on chromosome 2, complete sequence Length = 81735 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatat 35 |||||||||||||||||||| Sbjct: 29627 atttaaaaataaaagaatat 29608
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 1434615 ttaaaaataaaagaatatat 1434634
>gb|BC047057.1| Homo sapiens phosphodiesterase 1A, calmodulin-dependent, mRNA (cDNA clone IMAGE:5275668) Length = 1161 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ccgaaacctcttttatttaa 21 |||||||||||||||||||| Sbjct: 1027 ccgaaacctcttttatttaa 1046
>emb|CT025642.13| Mouse DNA sequence from clone RP23-471B6 on chromosome 13, complete sequence Length = 175367 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atttaaaaataaaagaatat 35 |||||||||||||||||||| Sbjct: 133738 atttaaaaataaaagaatat 133719
>emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, complete sequence Length = 209875 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 gaaacctcttttatttaaaaataa 27 |||||||||||||||| ||||||| Sbjct: 42045 gaaacctcttttattttaaaataa 42022
>gb|U62901.1|BBU62901 Borrelia burgdorferi thdF gene, partial cds, putative motility protein (flbF), flagellar hook associated proteins FlgK (flgK) and FlgL (flgL) genes, complete cds Length = 4239 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttaaaaataaaagaatatat 37 |||||||||||||||||||| Sbjct: 587 ttaaaaataaaagaatatat 606
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 ttttatttaaaaataaaagaatat 35 ||||||||||||| |||||||||| Sbjct: 945100 ttttatttaaaaaaaaaagaatat 945077
>emb|AL078614.2|HS82L10 Homo sapiens chromosome 21 PAC RPCIP704L1082Q2, complete sequence Length = 112597 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaacctcttttatttaaaaataaa 28 |||||||||||||| ||||||||| Sbjct: 48512 aaacctcttttattaaaaaataaa 48489
>emb|AJ132598.1|DME132598 Drosophila melanogaster H4r gene,3'-flanking region, 12670 BP Length = 12670 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ttatttaaaaataaaagaat 33 |||||||||||||||||||| Sbjct: 5921 ttatttaaaaataaaagaat 5902
>dbj|AP004370.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-512I24, complete sequences Length = 193212 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aaacctcttttatttaaaaataaa 28 ||||||||||| |||||||||||| Sbjct: 170925 aaacctcttttctttaaaaataaa 170948 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,486,234 Number of Sequences: 3902068 Number of extensions: 4486234 Number of successful extensions: 133657 Number of sequences better than 10.0: 150 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132594 Number of HSP's gapped (non-prelim): 1063 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
