ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24h12 |
|---|---|
| Clone Library Name | barley_pub |
>CTNS_ARATH (P57758) Cystinosin homolog| Length = 270 Score = 117 bits (294), Expect = 1e-26 Identities = 58/94 (61%), Positives = 70/94 (74%) Frame = -2 Query: 453 MNFKRKSTVGWSIGNILLDLTGGVLNFGQMGVQAIDQHTLVNFYGNIGKTLLSLETVFFD 274 MNF RKSTVGWSIGNILLD TGG+ N+ QM +Q+IDQ++ NFYGN+GKTLLSL ++FFD Sbjct: 173 MNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFD 232 Query: 273 LLFIIQHYVLYPVKRDENGKAIISERIAPLIRPS 172 +LF+ QHYVLYP K+ E PLI S Sbjct: 233 ILFMFQHYVLYPEKKVSKSPETGEESNEPLIDSS 266
>CTNS_CAEEL (Q09500) Cystinosin homolog| Length = 404 Score = 84.0 bits (206), Expect = 2e-16 Identities = 39/71 (54%), Positives = 52/71 (73%) Frame = -2 Query: 450 NFKRKSTVGWSIGNILLDLTGGVLNFGQMGVQAIDQHTLVNFYGNIGKTLLSLETVFFDL 271 N+ RKSTVGWSIGNI+LD TGG L+ QM +QA++ + FY N K L ++FFD+ Sbjct: 290 NYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDI 349 Query: 270 LFIIQHYVLYP 238 +F++QHYVLYP Sbjct: 350 IFMVQHYVLYP 360
>CTNS_DROME (Q9VCR7) Cystinosin homolog| Length = 397 Score = 76.3 bits (186), Expect = 4e-14 Identities = 38/79 (48%), Positives = 53/79 (67%) Frame = -2 Query: 456 VMNFKRKSTVGWSIGNILLDLTGGVLNFGQMGVQAIDQHTLVNFYGNIGKTLLSLETVFF 277 +MN++RKST GWSIGNILLD TGG L+ QM + A + V+ +G+ K L L +V F Sbjct: 291 LMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF 350 Query: 276 DLLFIIQHYVLYPVKRDEN 220 D+ F++QHYV Y R+ + Sbjct: 351 DVFFMLQHYVFYRHSRESS 369
>CTNS_MOUSE (P57757) Cystinosin| Length = 367 Score = 67.8 bits (164), Expect = 1e-11 Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Frame = -2 Query: 453 MNFKRKSTVGWSIGNILLDLTGGVLNFGQMGVQAI--DQHTLVNFYGNIGKTLLSLETVF 280 MNF KST GWSIG +LLD TGG + QM +Q+ DQ TL+ +G+ K L + T+F Sbjct: 287 MNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLI--FGDPTKFGLGVFTIF 344 Query: 279 FDLLFIIQHYVLYPVK 232 FD++F IQH+ LY K Sbjct: 345 FDVVFFIQHFYLYRKK 360 Score = 33.1 bits (74), Expect = 0.34 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Frame = -2 Query: 456 VMNFKRKSTVGWSIGNILLDLTG----GVLNFGQMGVQAIDQHTLVNFYGNI-----GKT 304 + N++RKS +G S + L+LTG V N G + V I + L+ + + Sbjct: 147 IQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNGVNPVDSNDA 206 Query: 303 LLSLETVFFDLLFIIQ 256 SL V L+ I+Q Sbjct: 207 FFSLHAVALTLIVILQ 222
>CTNS_HUMAN (O60931) Cystinosin| Length = 367 Score = 65.5 bits (158), Expect = 6e-11 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Frame = -2 Query: 453 MNFKRKSTVGWSIGNILLDLTGGVLNFGQMGVQAI--DQHTLVNFYGNIGKTLLSLETVF 280 MNF KST GWSIGN+LLD TGG + QM +Q+ DQ TL+ +G+ K L + ++ Sbjct: 287 MNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLI--FGDPTKFGLGVFSIV 344 Query: 279 FDLLFIIQHYVLY 241 FD++F IQH+ LY Sbjct: 345 FDVVFFIQHFCLY 357 Score = 36.6 bits (83), Expect = 0.031 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 9/76 (11%) Frame = -2 Query: 456 VMNFKRKSTVGWSIGNILLDLTG----GVLNFGQMGVQAIDQHTLVNFYG-----NIGKT 304 +MN++RKS +G S + L+LTG V N G + V I + L+ + N Sbjct: 147 IMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDV 206 Query: 303 LLSLETVFFDLLFIIQ 256 SL V L+ I+Q Sbjct: 207 FFSLHAVVLTLIIIVQ 222
>ERS1_YEAST (P17261) Transmembrane protein ERS1 (ERD suppressor)| Length = 260 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = -2 Query: 450 NFKRKSTVGWSIGNILLDLTGGVLNFGQMGVQAIDQH--TLVNFYGNIGKTLLSLETVFF 277 N RKS + I + LD+TGG+ + Q+ Q + +L F N GK LS+ T+ F Sbjct: 177 NSTRKSMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTFVTNFGKVGLSMVTLIF 236 Query: 276 DLLFIIQHYV 247 + +FI+Q +V Sbjct: 237 NFIFIMQWFV 246
>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B antigen)| Length = 1164 Score = 31.2 bits (69), Expect = 1.3 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 15/74 (20%) Frame = +1 Query: 199 LRNDGLT------ILIPFDRVQHIVLNYEEKVE--------ENS-FQRKKSLADISIEIH 333 L ND L L PF++++ IV + ++KVE ENS + K A I++ + Sbjct: 694 LENDALKGYFEKYFLTPFNKIKQIVDDLDKKVEQDQPAPIPENSEMDQAKEKAKIAVSKY 753 Query: 334 *SVLINSLHTHLTK 375 S +++ +H HL K Sbjct: 754 MSKVLDGVHQHLQK 767
>DPOL_METJA (Q58295) DNA polymerase (EC 2.7.7.7) [Contains: Mja pol-1 intein; Mja| pol-2 intein] Length = 1634 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +1 Query: 154 IFFRLI*GPDQRSYPLRNDG--LTILIPFDRVQHIVLNYEEKVEENSFQRKKSLADISIE 327 I F L+ G R P++N G LT+ + V+ ++L+ +++E +F+ + D+S+E Sbjct: 1288 ILFNLV-GIPTRFTPVKNKGYKLTLNPKYGTVKDLMLDEVKEIE--AFEYSGYVYDLSVE 1344 Query: 328 IH*SVLINSLHTH 366 + + L+N+++ H Sbjct: 1345 DNENFLVNNIYAH 1357
>ETV6_MOUSE (P97360) Transcription factor ETV6 (ETS-related protein Tel1) (Tel)| (ETS translocation variant 6) Length = 485 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 435 STVGWSIGNILLDLTGGVLNFGQMGVQAIDQHT 337 S VGW GN+ GGV+ G++GV A+ + T Sbjct: 452 SPVGWPRGNLPTGTAGGVMEAGELGV-AVKEET 483
>TRAF2_MOUSE (P39429) TNF receptor-associated factor 2| Length = 501 Score = 29.3 bits (64), Expect = 4.9 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +1 Query: 88 CIFVQTNSN*DSTARTVYISYTIFFRLI*GPDQR--SYPLRNDGLTILIPFDRVQHIVLN 261 C+ V N D T R ++S +FF ++ GP+ +P +L+ + +H++ Sbjct: 391 CLRVYLNG--DGTGRGTHLS--LFFVVMKGPNDALLQWPFNQKVTLMLLDHNNREHVIDA 446 Query: 262 YEEKVEENSFQRKKSLADIS 321 + V +SFQR S +I+ Sbjct: 447 FRPDVTSSSFQRPVSDMNIA 466
>L2GL_DROPS (Q08470) Protein lethal(2) giant larvae (P127)| Length = 1166 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 393 TGGVLNFGQMGVQAIDQHTLVN 328 TG + FGQ GV+ QHTLVN Sbjct: 56 TGAIKVFGQPGVELYAQHTLVN 77
>CD40L_MACMU (P63304) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 241 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 333 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>CD40L_CERTO (P63305) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 241 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 333 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>CD40L_CALJA (Q9BDN3) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 241 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 333 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>CD40L_AOTTR (Q9BDM3) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 241 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 333 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,890,992 Number of Sequences: 219361 Number of extensions: 1231020 Number of successful extensions: 2956 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2954 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
