ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
2dbj|AK071421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 9e-64
3gb|AY108833.1| Zea mays PCO143034 mRNA sequence 250 3e-63
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 176 4e-41
6emb|AL831801.4|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb... 176 4e-41
7emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E1... 48 0.025
8ref|XM_394902.2| PREDICTED: Apis mellifera similar to CG17119-PA... 46 0.100
9emb|AL589693.3| Human DNA sequence from clone RP11-19F10 on chro... 44 0.39
10emb|AJ586737.2| Drosophila virilis partial mod(mdg4) gene 44 0.39
11ref|NM_123432.2| Arabidopsis thaliana unknown protein AT5G40670 ... 42 1.6
12gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 geno... 42 1.6
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
14emb|CT025174.2| Xenopus tropicalis finished cDNA, clone TNeu070d14 42 1.6
15gb|AC078848.3| Homo sapiens BAC clone CTD-2220I23 from 7, comple... 42 1.6
16gb|AY060522.1| Arabidopsis thaliana AT5g40670/MNF13_190 mRNA, co... 42 1.6
17gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 42 1.6
18gb|AY052257.1| Arabidopsis thaliana AT5g40670/MNF13_190 mRNA, co... 42 1.6
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20emb|BX832239.1|CNS09ZRA Arabidopsis thaliana Full-length cDNA Co... 42 1.6
21gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence 42 1.6
22dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.6
23gb|AC005016.1|AC005016 Homo sapiens BAC clone GS1-180J15 from 7q... 42 1.6
24gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 42 1.6
25gb|AC101593.16| Mus musculus chromosome 18, clone RP23-198A7, co... 40 6.2
26gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 40 6.2
27gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome ... 40 6.2
28gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosom... 40 6.2
29gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complet... 40 6.2
30emb|AL354916.16| Human DNA sequence from clone RP11-26K22 on chr... 40 6.2
31gb|AC107072.3| Homo sapiens BAC clone RP11-359D14 from 4, comple... 40 6.2
32gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete... 40 6.2
33gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map... 40 6.2
34gb|AC097469.2| Homo sapiens BAC clone RP11-55N4 from 4, complete... 40 6.2
35emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in ... 40 6.2
36gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, compl... 40 6.2
37gb|AC104607.15| Drosophila melanogaster X BAC RP98-19G9 (Roswell... 40 6.2
38gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, comple... 40 6.2
39emb|AL929208.9| Zebrafish DNA sequence from clone DKEY-56P7 in l... 40 6.2
40emb|CR848671.5| Zebrafish DNA sequence from clone CH211-274P22 i... 40 6.2
41gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 ... 40 6.2
42emb|AL953904.10| Zebrafish DNA sequence from clone CH211-266I6, ... 40 6.2 
>dbj|AK068027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134P03, full
            insert sequence
          Length = 1373

 Score =  351 bits (177), Expect = 1e-93
 Identities = 279/313 (89%)
 Strand = Plus / Minus

                                                                        
Query: 141  tatatcatacactatcttcttcaggcttatctgagggcctgatcagaggagctatcctct 200
            ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||| ||| |
Sbjct: 1165 tatatcacacactatcttcttcaggcttgtctgaaggcctgataagaggagctacccttt 1106

                                                                        
Query: 201  cagaaatgatggccttaccattctcatcccgtttgacagggtacaacacatagtgttgaa 260
            |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct: 1105 cagaaatgatagccttaccattctcatctcgtttgacagggtacagcacatagtgttgga 1046

                                                                        
Query: 261  ttatgaagagaaggtcgaagaaaacagtttccaacgaaagaagagtcttgccgatatttc 320
            ||||||| |  | ||||||||||||   |||||| |||||||| || || || |||||||
Sbjct: 1045 ttatgaataagatgtcgaagaaaacgacttccaatgaaagaagggttttcccaatatttc 986

                                                                        
Query: 321  catagaaattcactaaagtgtgctgatcaatagcttgcacacccatctgaccaaagttta 380
            ||||||| |||||||  ||||| ||||| || | ||||||||||||||| ||||||||||
Sbjct: 985  catagaagttcactagcgtgtgttgatctattgattgcacacccatctggccaaagttta 926

                                                                        
Query: 381  gcacccctcctgtaagatcaagtaaaatattgccaatactccaaccaactgtgctcttcc 440
            |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 925  gcacccctcctgtaagatcaagtaaaatattgccaatactccaaccaattgtactcttcc 866

                         
Query: 441  gcttgaagttcat 453
             | ||||||||||
Sbjct: 865  tcctgaagttcat 853
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>dbj|AK071421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092B19, full
           insert sequence
          Length = 1157

 Score =  252 bits (127), Expect = 9e-64
 Identities = 208/235 (88%)
 Strand = Plus / Minus

                                                                       
Query: 219 cattctcatcccgtttgacagggtacaacacatagtgttgaattatgaagagaaggtcga 278
           |||||||||| |||||||||||||||| |||||||||||| |||||||| |  | |||||
Sbjct: 847 cattctcatctcgtttgacagggtacagcacatagtgttggattatgaataagatgtcga 788

                                                                       
Query: 279 agaaaacagtttccaacgaaagaagagtcttgccgatatttccatagaaattcactaaag 338
           |||||||   |||||| |||||||| || || || |||||||||||||| |||||||  |
Sbjct: 787 agaaaacgacttccaatgaaagaagggttttcccaatatttccatagaagttcactagcg 728

                                                                       
Query: 339 tgtgctgatcaatagcttgcacacccatctgaccaaagtttagcacccctcctgtaagat 398
           |||| ||||| || | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 727 tgtgttgatctattgattgcacacccatctggccaaagtttagcacccctcctgtaagat 668

                                                                  
Query: 399 caagtaaaatattgccaatactccaaccaactgtgctcttccgcttgaagttcat 453
           |||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||
Sbjct: 667 caagtaaaatattgccaatactccaaccaattgtactcttcctcctgaagttcat 613
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>gb|AY108833.1| Zea mays PCO143034 mRNA sequence
          Length = 869

 Score =  250 bits (126), Expect = 3e-63
 Identities = 264/310 (85%)
 Strand = Plus / Minus

                                                                       
Query: 144 atcatacactatcttcttcaggcttatctgagggcctgatcagaggagctatcctctcag 203
           |||||||  |||||||||||||||| || || |||||||| || || |||| ||| ||||
Sbjct: 572 atcatacgttatcttcttcaggcttgtccgaaggcctgataaggggggctaccctttcag 513

                                                                       
Query: 204 aaatgatggccttaccattctcatcccgtttgacagggtacaacacatagtgttgaatta 263
           ||||||| |||||||||||||| |||   ||||||||||||||||| |||||||| || |
Sbjct: 512 aaatgattgccttaccattctcgtccttcttgacagggtacaacacgtagtgttggataa 453

                                                                       
Query: 264 tgaagagaaggtcgaagaaaacagtttccaacgaaagaagagtcttgccgatatttccat 323
           |||| || |  || |||||||| || ||||| |||||||| || || || || |||||||
Sbjct: 452 tgaacaggacatcaaagaaaaccgtctccaatgaaagaagggttttcccaatgtttccat 393

                                                                       
Query: 324 agaaattcactaaagtgtgctgatcaatagcttgcacacccatctgaccaaagtttagca 383
           |||||||||| ||||| || ||||| ||||  |||||||||||||||| ||| || ||||
Sbjct: 392 agaaattcaccaaagtatgttgatctatagactgcacacccatctgacaaaaattcagca 333

                                                                       
Query: 384 cccctcctgtaagatcaagtaaaatattgccaatactccaaccaactgtgctcttccgct 443
           |||||||||| ||||||||||| ||||||||||  |||||||||| ||||||||||||| 
Sbjct: 332 cccctcctgtgagatcaagtaatatattgccaacgctccaaccaattgtgctcttccgcc 273

                     
Query: 444 tgaagttcat 453
           ||||||||||
Sbjct: 272 tgaagttcat 263
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  176 bits (89), Expect = 4e-41
 Identities = 131/145 (90%)
 Strand = Plus / Plus

                                                                            
Query: 141      tatatcatacactatcttcttcaggcttatctgagggcctgatcagaggagctatcctct 200
                ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||| ||| |
Sbjct: 10419379 tatatcacacactatcttcttcaggcttgtctgaaggcctgataagaggagctacccttt 10419438

                                                                            
Query: 201      cagaaatgatggccttaccattctcatcccgtttgacagggtacaacacatagtgttgaa 260
                |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct: 10419439 cagaaatgatagccttaccattctcatctcgtttgacagggtacagcacatagtgttgga 10419498

                                         
Query: 261      ttatgaagagaaggtcgaagaaaac 285
                ||||||| |  | ||||||||||||
Sbjct: 10419499 ttatgaataagatgtcgaagaaaac 10419523



 Score =  157 bits (79), Expect = 4e-35
 Identities = 94/99 (94%)
 Strand = Plus / Plus

                                                                            
Query: 355      ttgcacacccatctgaccaaagtttagcacccctcctgtaagatcaagtaaaatattgcc 414
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10419834 ttgcacacccatctggccaaagtttagcacccctcctgtaagatcaagtaaaatattgcc 10419893

                                                       
Query: 415      aatactccaaccaactgtgctcttccgcttgaagttcat 453
                |||||||||||||| ||| ||||||| | ||||||||||
Sbjct: 10419894 aatactccaaccaattgtactcttcctcctgaagttcat 10419932



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 291      ccaacgaaagaagagtcttgccgatatttccatagaaattcacta 335
                |||| |||||||| || || || |||||||||||||| |||||||
Sbjct: 10419683 ccaatgaaagaagggttttcccaatatttccatagaagttcacta 10419727
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  176 bits (89), Expect = 4e-41
 Identities = 131/145 (90%)
 Strand = Plus / Plus

                                                                            
Query: 141      tatatcatacactatcttcttcaggcttatctgagggcctgatcagaggagctatcctct 200
                ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||| ||| |
Sbjct: 10419261 tatatcacacactatcttcttcaggcttgtctgaaggcctgataagaggagctacccttt 10419320

                                                                            
Query: 201      cagaaatgatggccttaccattctcatcccgtttgacagggtacaacacatagtgttgaa 260
                |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct: 10419321 cagaaatgatagccttaccattctcatctcgtttgacagggtacagcacatagtgttgga 10419380

                                         
Query: 261      ttatgaagagaaggtcgaagaaaac 285
                ||||||| |  | ||||||||||||
Sbjct: 10419381 ttatgaataagatgtcgaagaaaac 10419405



 Score =  157 bits (79), Expect = 4e-35
 Identities = 94/99 (94%)
 Strand = Plus / Plus

                                                                            
Query: 355      ttgcacacccatctgaccaaagtttagcacccctcctgtaagatcaagtaaaatattgcc 414
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10419716 ttgcacacccatctggccaaagtttagcacccctcctgtaagatcaagtaaaatattgcc 10419775

                                                       
Query: 415      aatactccaaccaactgtgctcttccgcttgaagttcat 453
                |||||||||||||| ||| ||||||| | ||||||||||
Sbjct: 10419776 aatactccaaccaattgtactcttcctcctgaagttcat 10419814



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 291      ccaacgaaagaagagtcttgccgatatttccatagaaattcacta 335
                |||| |||||||| || || || |||||||||||||| |||||||
Sbjct: 10419565 ccaatgaaagaagggttttcccaatatttccatagaagttcacta 10419609
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>emb|AL831801.4|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb0094I20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130454

 Score =  176 bits (89), Expect = 4e-41
 Identities = 131/145 (90%)
 Strand = Plus / Plus

                                                                         
Query: 141   tatatcatacactatcttcttcaggcttatctgagggcctgatcagaggagctatcctct 200
             ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||| ||| |
Sbjct: 71880 tatatcacacactatcttcttcaggcttgtctgaaggcctgataagaggagctacccttt 71939

                                                                         
Query: 201   cagaaatgatggccttaccattctcatcccgtttgacagggtacaacacatagtgttgaa 260
             |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct: 71940 cagaaatgatagccttaccattctcatctcgtttgacagggtacagcacatagtgttgga 71999

                                      
Query: 261   ttatgaagagaaggtcgaagaaaac 285
             ||||||| |  | ||||||||||||
Sbjct: 72000 ttatgaataagatgtcgaagaaaac 72024



 Score =  157 bits (79), Expect = 4e-35
 Identities = 94/99 (94%)
 Strand = Plus / Plus

                                                                         
Query: 355   ttgcacacccatctgaccaaagtttagcacccctcctgtaagatcaagtaaaatattgcc 414
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72335 ttgcacacccatctggccaaagtttagcacccctcctgtaagatcaagtaaaatattgcc 72394

                                                    
Query: 415   aatactccaaccaactgtgctcttccgcttgaagttcat 453
             |||||||||||||| ||| ||||||| | ||||||||||
Sbjct: 72395 aatactccaaccaattgtactcttcctcctgaagttcat 72433



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 291   ccaacgaaagaagagtcttgccgatatttccatagaaattcacta 335
             |||| |||||||| || || || |||||||||||||| |||||||
Sbjct: 72184 ccaatgaaagaagggttttcccaatatttccatagaagttcacta 72228
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>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23
             Contains the 5' end of a novel gene, the C1orf33 gene for
             chromosome 1 open reading frame 33, four novel genes, the 
             AKR7A3 gene for aldo-keto reductase family 7, member A3
             (aflatoxin aldehyde reductase), the  AKR7A2 gene for
             aldo-keto reductase family 7, member A2 (aflatoxin
             aldehyde reductase), the 3' end of the CAPZB gene for
             capping protein (actin filament) muscle Z-line, beta and
             two CpG islands, complete sequence
          Length = 154130

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 59    tcaaaatacatgaaaaacaataat 82
             ||||||||||||||||||||||||
Sbjct: 80071 tcaaaatacatgaaaaacaataat 80048



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    aaatacatgaaaaacaataat 82
             |||||||||||||||||||||
Sbjct: 94347 aaatacatgaaaaacaataat 94327
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>ref|XM_394902.2| PREDICTED: Apis mellifera similar to CG17119-PA, isoform A
           (LOC411429), mRNA
          Length = 1134

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 407 atattgccaatactccaaccaac 429
           |||||||||||||||||||||||
Sbjct: 644 atattgccaatactccaaccaac 622
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>emb|AL589693.3| Human DNA sequence from clone RP11-19F10 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 165203

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 57     attcaaaatacatgaaaaacaataat 82
              ||||| ||||||||||||||||||||
Sbjct: 133138 attcagaatacatgaaaaacaataat 133113
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>emb|AJ586737.2| Drosophila virilis partial mod(mdg4) gene
          Length = 24391

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 135   tgtatatatatcatacactatc 156
             ||||||||||||||||||||||
Sbjct: 23399 tgtatatatatcatacactatc 23378
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>ref|NM_123432.2| Arabidopsis thaliana unknown protein AT5G40670 mRNA, complete cds
          Length = 1264

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 239 gggtacaacacatagtgttgaattatgaagagaaggtcgaa 279
           ||||| ||||||||||||||||  |||||||| | ||||||
Sbjct: 988 gggtataacacatagtgttgaaacatgaagaggatgtcgaa 948
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>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete
              sequence
          Length = 163712

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 134    ctgtatatatatcatacacta 154
              |||||||||||||||||||||
Sbjct: 157614 ctgtatatatatcatacacta 157634
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 134      ctgtatatatatcatacacta 154
                |||||||||||||||||||||
Sbjct: 29613763 ctgtatatatatcatacacta 29613743
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>emb|CT025174.2| Xenopus tropicalis finished cDNA, clone TNeu070d14
          Length = 3452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 263 atgaagagaaggtcgaagaaaacag 287
           |||||||||||| ||||||||||||
Sbjct: 726 atgaagagaaggccgaagaaaacag 702
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>gb|AC078848.3| Homo sapiens BAC clone CTD-2220I23 from 7, complete sequence
          Length = 134778

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   atttccatagaaattcactaa 336
             |||||||||||||||||||||
Sbjct: 81996 atttccatagaaattcactaa 82016
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>gb|AY060522.1| Arabidopsis thaliana AT5g40670/MNF13_190 mRNA, complete cds
          Length = 813

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 239 gggtacaacacatagtgttgaattatgaagagaaggtcgaa 279
           ||||| ||||||||||||||||  |||||||| | ||||||
Sbjct: 731 gggtataacacatagtgttgaaacatgaagaggatgtcgaa 691
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    tagtaactgagacagcactgc 128
              |||||||||||||||||||||
Sbjct: 617302 tagtaactgagacagcactgc 617322
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>gb|AY052257.1| Arabidopsis thaliana AT5g40670/MNF13_190 mRNA, complete cds
          Length = 1109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 239 gggtacaacacatagtgttgaattatgaagagaaggtcgaa 279
           ||||| ||||||||||||||||  |||||||| | ||||||
Sbjct: 835 gggtataacacatagtgttgaaacatgaagaggatgtcgaa 795
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 134      ctgtatatatatcatacacta 154
                |||||||||||||||||||||
Sbjct: 29705185 ctgtatatatatcatacacta 29705165
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>emb|BX832239.1|CNS09ZRA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH60ZD04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1022

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 239 gggtacaacacatagtgttgaattatgaagagaaggtcgaa 279
           ||||| ||||||||||||||||  |||||||| | ||||||
Sbjct: 792 gggtataacacatagtgttgaaacatgaagaggatgtcgaa 752
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>gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence
          Length = 160850

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   tagtaactgagacagcactgc 128
             |||||||||||||||||||||
Sbjct: 16957 tagtaactgagacagcactgc 16977
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>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13
          Length = 85992

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 239   gggtacaacacatagtgttgaattatgaagagaaggtcgaa 279
             ||||| ||||||||||||||||  |||||||| | ||||||
Sbjct: 62270 gggtataacacatagtgttgaaacatgaagaggatgtcgaa 62230
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>gb|AC005016.1|AC005016 Homo sapiens BAC clone GS1-180J15 from 7q31, complete sequence
          Length = 123277

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   atttccatagaaattcactaa 336
             |||||||||||||||||||||
Sbjct: 75411 atttccatagaaattcactaa 75431
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 387     ctcctgtaagatcaagtaaaatatt 411
               |||||||||||||||| ||||||||
Sbjct: 1488797 ctcctgtaagatcaagaaaaatatt 1488821
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>gb|AC101593.16| Mus musculus chromosome 18, clone RP23-198A7, complete sequence
          Length = 206936

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   acccatctgaccaaagttta 380
             ||||||||||||||||||||
Sbjct: 20914 acccatctgaccaaagttta 20895
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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    caagtaaaatattgccaata 418
              ||||||||||||||||||||
Sbjct: 168808 caagtaaaatattgccaata 168789
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>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence
          Length = 236342

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    caagtaaaatattgccaata 418
              ||||||||||||||||||||
Sbjct: 145547 caagtaaaatattgccaata 145528
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>gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosome 13, complete sequence
          Length = 175354

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     agttaattcaaaatacatga 71
              ||||||||||||||||||||
Sbjct: 120412 agttaattcaaaatacatga 120393
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>gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complete sequence
          Length = 179728

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 59    tcaaaatacatgaaaaacaataat 82
             ||||||||||| ||||||||||||
Sbjct: 43131 tcaaaatacataaaaaacaataat 43108
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>emb|AL354916.16| Human DNA sequence from clone RP11-26K22 on chromosome 10 Contains a CpG
              island, complete sequence
          Length = 140148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 4      ctgcaatatttaaatttttacagtaatc 31
              ||||||||||| |||| |||||||||||
Sbjct: 107456 ctgcaatattttaattattacagtaatc 107429
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>gb|AC107072.3| Homo sapiens BAC clone RP11-359D14 from 4, complete sequence
          Length = 152824

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     attcaaaatacatgaaaaac 76
              ||||||||||||||||||||
Sbjct: 142093 attcaaaatacatgaaaaac 142074
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>gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete sequence
          Length = 111147

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tttaaatttttacagtaatc 31
             ||||||||||||||||||||
Sbjct: 76732 tttaaatttttacagtaatc 76751
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>gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map mi421, complete
             sequence
          Length = 113960

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tcgaagaaaacagtttccaa 294
             ||||||||||||||||||||
Sbjct: 90534 tcgaagaaaacagtttccaa 90515
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>gb|AC097469.2| Homo sapiens BAC clone RP11-55N4 from 4, complete sequence
          Length = 191883

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aattcaaaatacatgaaaaa 75
             ||||||||||||||||||||
Sbjct: 69381 aattcaaaatacatgaaaaa 69400
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>emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in linkage group 14,
             complete sequence
          Length = 243729

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   taagatcaagtaaaatattg 412
             ||||||||||||||||||||
Sbjct: 39310 taagatcaagtaaaatattg 39329
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>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence
          Length = 197775

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aatatttaaatttttacagt 27
             ||||||||||||||||||||
Sbjct: 86285 aatatttaaatttttacagt 86304
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>gb|AC104607.15| Drosophila melanogaster X BAC RP98-19G9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 137639

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ctttgttcaaacaaatagta 112
             ||||||||||||||||||||
Sbjct: 73584 ctttgttcaaacaaatagta 73603
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>gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, complete sequence
          Length = 210109

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 397    atcaagtaaaatattgccaatact 420
              ||||||||||| ||||||||||||
Sbjct: 148477 atcaagtaaaaaattgccaatact 148500
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>emb|AL929208.9| Zebrafish DNA sequence from clone DKEY-56P7 in linkage group 7,
             complete sequence
          Length = 189608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tatatatcatacactatctt 158
             ||||||||||||||||||||
Sbjct: 72708 tatatatcatacactatctt 72727
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>emb|CR848671.5| Zebrafish DNA sequence from clone CH211-274P22 in linkage group 11,
             complete sequence
          Length = 76453

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    gaaatatgtacatcagttaa 57
             ||||||||||||||||||||
Sbjct: 70681 gaaatatgtacatcagttaa 70700
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>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete
              sequence
          Length = 318665

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     ctttgttcaaacaaatagta 112
              ||||||||||||||||||||
Sbjct: 214227 ctttgttcaaacaaatagta 214246
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>emb|AL953904.10| Zebrafish DNA sequence from clone CH211-266I6, complete sequence
          Length = 166088

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  atcaagtaaaatattgccaa 416
            ||||||||||||||||||||
Sbjct: 4468 atcaagtaaaatattgccaa 4487


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,731,337
Number of Sequences: 3902068
Number of extensions: 5731337
Number of successful extensions: 114577
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114342
Number of HSP's gapped (non-prelim): 235
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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