ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predic... 167 4e-38
2emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4,... 167 4e-38
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
4dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
5dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
6gb|AY110878.1| Zea mays CL16535_1 mRNA sequence 121 2e-24
7ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative... 50 0.006
8gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
9gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, comp... 50 0.006
10gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 50 0.006
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
12dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
14ref|XM_479649.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.096
15ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.096
16ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.096
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
18dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
19dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
20dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.096
21dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.096
22dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.096
23gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence 44 0.38
24gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence 42 1.5
25gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.5
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
28gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 42 1.5
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
30emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115... 42 1.5
31gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene,... 40 5.9
32gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete... 40 5.9
33ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 5.9
34ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (... 40 5.9
35gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, comple... 40 5.9
36emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate d... 40 5.9
37gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.9
38emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.9
39emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 40 5.9
40emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene 40 5.9
41dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.9
42gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 5.9
43gb|AC092074.3| Homo sapiens chromosome 19 clone X200282, complet... 40 5.9
44gb|AC022370.28| Homo sapiens chromosome UL clone RP11-22O10, com... 40 5.9
45gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.9
46dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
47emb|BX649480.3| Human DNA sequence from clone RP11-22O10 on chro... 40 5.9
48emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 5.9
49emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 i... 40 5.9
50gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Can... 40 5.9
51gb|BC083571.1| Rattus norvegicus progesterone receptor membrane ... 40 5.9
52dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full ... 40 5.9
53gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dik... 40 5.9
54ref|NM_001008374.1| Rattus norvegicus progesterone receptor memb... 40 5.9

>ref|XM_473298.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 711

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 289 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 348
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 659 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 600

                                                                       
Query: 349 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 408
           ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 599 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 540

                                           
Query: 409 tccaggaacccgagctccgccgtcgccagcgt 440
           ||||||| ||||||||||||||||||||||||
Sbjct: 539 tccaggagcccgagctccgccgtcgccagcgt 508



to top

>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
             complete sequence
          Length = 121056

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Plus

                                                                         
Query: 289   gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 348
             |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 87576 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 87635

                                                                         
Query: 349   accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 408
             ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 87636 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 87695

                                             
Query: 409   tccaggaacccgagctccgccgtcgccagcgt 440
             ||||||| ||||||||||||||||||||||||
Sbjct: 87696 tccaggagcccgagctccgccgtcgccagcgt 87727



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Plus

                                                                            
Query: 289      gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 348
                |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 26648018 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 26648077

                                                                            
Query: 349      accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 408
                ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 26648078 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 26648137

                                                
Query: 409      tccaggaacccgagctccgccgtcgccagcgt 440
                ||||||| ||||||||||||||||||||||||
Sbjct: 26648138 tccaggagcccgagctccgccgtcgccagcgt 26648169



to top

>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full
           insert sequence
          Length = 1046

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 289 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 348
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 842 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 783

                                                                       
Query: 349 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 408
           ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 782 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 723

                                           
Query: 409 tccaggaacccgagctccgccgtcgccagcgt 440
           ||||||| ||||||||||||||||||||||||
Sbjct: 722 tccaggagcccgagctccgccgtcgccagcgt 691



to top

>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full
           insert sequence
          Length = 1078

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 289 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 348
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 840 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 781

                                                                       
Query: 349 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 408
           ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 780 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 721

                                           
Query: 409 tccaggaacccgagctccgccgtcgccagcgt 440
           ||||||| ||||||||||||||||||||||||
Sbjct: 720 tccaggagcccgagctccgccgtcgccagcgt 689



to top

>gb|AY110878.1| Zea mays CL16535_1 mRNA sequence
          Length = 1068

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/103 (88%)
 Strand = Plus / Minus

                                                                       
Query: 337 gccgtgaagttgaccaggagcgcctccgggccgtacttgtcgagcccggagctctgcagg 396
           ||||||||||||||||||| |||||| | |||||||||||||||      ||||| ||||
Sbjct: 801 gccgtgaagttgaccaggaacgcctcggcgccgtacttgtcgagnnnnnngctctccagg 742

                                                      
Query: 397 aaggtcatcttctccaggaacccgagctccgccgtcgccagcg 439
           ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 741 aaggtcagcttctccaggaacccgagctccgcggtcgccagcg 699



to top

>ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative cytochrome b-561
           (OSJNBb0073N24.15), mRNA
          Length = 693

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 394 aggaaggtcatcttctccaggaacccgagctccgccg 430
           |||||||| | ||||||||||||||| ||||||||||
Sbjct: 536 aggaaggtgagcttctccaggaaccccagctccgccg 500



to top

>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 394   aggaaggtcatcttctccaggaacccgagctccgccg 430
             |||||||| | ||||||||||||||| ||||||||||
Sbjct: 34668 aggaaggtgagcttctccaggaaccccagctccgccg 34704



to top

>gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, complete sequence
          Length = 197630

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 392    gcaggaaggtcatcttctccaggaa 416
              |||||||||||||||||||||||||
Sbjct: 135415 gcaggaaggtcatcttctccaggaa 135391



to top

>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
              sequence
          Length = 130058

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 394    aggaaggtcatcttctccaggaacccgagctccgccg 430
              |||||||| | ||||||||||||||| ||||||||||
Sbjct: 100526 aggaaggtgagcttctccaggaaccccagctccgccg 100562



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 394      aggaaggtcatcttctccaggaacccgagctccgccg 430
                |||||||| | ||||||||||||||| ||||||||||
Sbjct: 18739248 aggaaggtgagcttctccaggaaccccagctccgccg 18739284



to top

>dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full
           insert sequence
          Length = 946

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 394 aggaaggtcatcttctccaggaacccgagctccgccg 430
           |||||||| | ||||||||||||||| ||||||||||
Sbjct: 615 aggaaggtgagcttctccaggaaccccagctccgccg 579



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 394      aggaaggtcatcttctccaggaacccgagctccgccg 430
                |||||||| | ||||||||||||||| ||||||||||
Sbjct: 18750101 aggaaggtgagcttctccaggaaccccagctccgccg 18750137



to top

>ref|XM_479649.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 968

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684

                  
Query: 358 gcctccg 364
           |||||||
Sbjct: 683 gcctccg 677



to top

>ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694

                  
Query: 358 gcctccg 364
           |||||||
Sbjct: 693 gcctccg 687



to top

>ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA
          Length = 1158

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690

                  
Query: 358 gcctccg 364
           |||||||
Sbjct: 689 gcctccg 683



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 298   gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
             |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897

                    
Query: 358   gcctccg 364
             |||||||
Sbjct: 89898 gcctccg 89904



to top

>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0015C07
          Length = 149079

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 298  gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
            |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 5173 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 5232

                   
Query: 358  gcctccg 364
            |||||||
Sbjct: 5233 gcctccg 5239



to top

>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 298   gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
             |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897

                    
Query: 358   gcctccg 364
             |||||||
Sbjct: 89898 gcctccg 89904



to top

>dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D02, full
           insert sequence
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694

                  
Query: 358 gcctccg 364
           |||||||
Sbjct: 693 gcctccg 687



to top

>dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047K10, full
           insert sequence
          Length = 968

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684

                  
Query: 358 gcctccg 364
           |||||||
Sbjct: 683 gcctccg 677



to top

>dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B08, full
           insert sequence
          Length = 1160

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 357
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690

                  
Query: 358 gcctccg 364
           |||||||
Sbjct: 689 gcctccg 683



to top

>gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence
          Length = 227

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 334 agggccgtgaagttgaccagga 355
           ||||||||||||||||||||||
Sbjct: 144 agggccgtgaagttgaccagga 165



to top

>gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence
          Length = 34861

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 62   agtgcagttttcagtaatcaa 82
            |||||||||||||||||||||
Sbjct: 6299 agtgcagttttcagtaatcaa 6319



to top

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     cgacgaccacggcggcgccga 319
               |||||||||||||||||||||
Sbjct: 3806661 cgacgaccacggcggcgccga 3806641



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 298      gcgacgaccacggcggcgccg 318
                |||||||||||||||||||||
Sbjct: 10623378 gcgacgaccacggcggcgccg 10623398



to top

>dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M23, full
           insert sequence
          Length = 3395

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 298 gcgacgaccacggcggcgccg 318
           |||||||||||||||||||||
Sbjct: 322 gcgacgaccacggcggcgccg 342



to top

>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 379    agcccggagctctgcaggaag 399
              |||||||||||||||||||||
Sbjct: 103661 agcccggagctctgcaggaag 103681



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 298      gcgacgaccacggcggcgccg 318
                |||||||||||||||||||||
Sbjct: 10623260 gcgacgaccacggcggcgccg 10623280



to top

>emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115_G02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 112916

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   gcgacgaccacggcggcgccg 318
             |||||||||||||||||||||
Sbjct: 86681 gcgacgaccacggcggcgccg 86701



to top

>gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene, complete cds
          Length = 2096

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 ccgcgggagcgacggcagcg 300
           ||||||||||||||||||||
Sbjct: 567 ccgcgggagcgacggcagcg 586



to top

>gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete sequence
          Length = 183847

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 417    cccgagctccgccgtcgccagcgt 440
              ||||||||||||| ||||||||||
Sbjct: 177195 cccgagctccgccttcgccagcgt 177172



to top

>ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_56_51041_50559) partial mRNA
          Length = 483

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 cggagctctgcaggaaggtc 402
           ||||||||||||||||||||
Sbjct: 268 cggagctctgcaggaaggtc 249



to top

>ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (GLP_56_50716_53370)
           partial mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 cggagctctgcaggaaggtc 402
           ||||||||||||||||||||
Sbjct: 59  cggagctctgcaggaaggtc 78



to top

>gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, complete sequence
          Length = 192556

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 417    cccgagctccgccgtcgccagcgt 440
              ||||||||||||| ||||||||||
Sbjct: 110030 cccgagctccgccttcgccagcgt 110053



to top

>emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate dikinase
          Length = 4212

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 383  cggagctctgcaggaaggtc 402
            ||||||||||||||||||||
Sbjct: 1209 cggagctctgcaggaaggtc 1228



to top

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     cgaggagcaccacgacgagg 336
               ||||||||||||||||||||
Sbjct: 1219685 cgaggagcaccacgacgagg 1219666



to top

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     acgaccacggcggcgccgag 320
               ||||||||||||||||||||
Sbjct: 2117350 acgaccacggcggcgccgag 2117331



to top

>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   ccaggagcgcctccgggccg 369
             ||||||||||||||||||||
Sbjct: 60989 ccaggagcgcctccgggccg 61008



to top

>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene
          Length = 20394

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ccaggagcgcctccgggccg 369
             ||||||||||||||||||||
Sbjct: 20164 ccaggagcgcctccgggccg 20145



to top

>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     agcgacgaccacggcggcgc 316
               ||||||||||||||||||||
Sbjct: 3028884 agcgacgaccacggcggcgc 3028903



to top

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 299     cgacgaccacggcggcgccg 318
               ||||||||||||||||||||
Sbjct: 2489130 cgacgaccacggcggcgccg 2489111



to top

>gb|AC092074.3| Homo sapiens chromosome 19 clone X200282, complete sequence
          Length = 38986

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 108  aaaccagacgtgaatcctgtgctc 131
            ||||||||||||||||||| ||||
Sbjct: 3558 aaaccagacgtgaatcctgggctc 3535



to top

>gb|AC022370.28| Homo sapiens chromosome UL clone RP11-22O10, complete sequence
          Length = 179013

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    aaaccagacgtgaatcctgtgctc 131
              ||||||||||||||||||| ||||
Sbjct: 124651 aaaccagacgtgaatcctgggctc 124628



to top

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    cgaccacggcggcgccgagg 321
              ||||||||||||||||||||
Sbjct: 462681 cgaccacggcggcgccgagg 462662



to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 299     cgacgaccacggcggcgccgaggagcac 326
               ||||||||||||||| ||||||| ||||
Sbjct: 1127665 cgacgaccacggcggagccgaggggcac 1127638



to top

>emb|BX649480.3| Human DNA sequence from clone RP11-22O10 on chromosome 10, complete
              sequence
          Length = 181432

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    aaaccagacgtgaatcctgtgctc 131
              ||||||||||||||||||| ||||
Sbjct: 124649 aaaccagacgtgaatcctgggctc 124626



to top

>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 417     cccgagctccgccgtcgccagcgt 440
               |||||||||||| |||||||||||
Sbjct: 1568981 cccgagctccgctgtcgccagcgt 1568958



to top

>emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 in linkage group 25,
             complete sequence
          Length = 193619

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   acacacaaaccagacgtgaa 121
             ||||||||||||||||||||
Sbjct: 36775 acacacaaaccagacgtgaa 36756



to top

>gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cagacgttcaacaatcagca 202
             ||||||||||||||||||||
Sbjct: 96679 cagacgttcaacaatcagca 96698



to top

>gb|BC083571.1| Rattus norvegicus progesterone receptor membrane component 2, mRNA
           (cDNA clone MGC:93874 IMAGE:7112203), complete cds
          Length = 1974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 cgcgggagcgacggcagcga 301
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107



to top

>dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full insert sequence
          Length = 2701

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 gttgaccaggagcgcctccg 364
           ||||||||||||||||||||
Sbjct: 461 gttgaccaggagcgcctccg 480



to top

>gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dikinase gene, complete cds
          Length = 2803

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 cggagctctgcaggaaggtc 402
           ||||||||||||||||||||
Sbjct: 185 cggagctctgcaggaaggtc 204



to top

>ref|NM_001008374.1| Rattus norvegicus progesterone receptor membrane component 2
           (Pgrmc2), mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 cgcgggagcgacggcagcga 301
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,850,996
Number of Sequences: 3902068
Number of extensions: 2850996
Number of successful extensions: 59475
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58828
Number of HSP's gapped (non-prelim): 646
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top