ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24h09 |
|---|---|
| Clone Library Name | barley_pub |
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 32.7 bits (73), Expect = 0.21 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 402 AGSGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHG 280 +G G VA QG +T GFG+ P+ + P G+P G Sbjct: 1949 SGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFG 1989
>NFKB2_HUMAN (Q00653) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor| KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor NF-kappa-B p52 subunit] Length = 899 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = -1 Query: 399 GSGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGC 277 GSGG AG G+ G ++GF L SPY SGA GC Sbjct: 359 GSGGAAG-GYGGAGGGGSLGFFPSSLA-YSPYQSGAGPMGC 397
>FLCN_XENTR (Q5M7Q1) Folliculin| Length = 579 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -3 Query: 247 CQLCHCHGPRSLICVHAL 194 C C HGPR+L C AL Sbjct: 8 CHFCELHGPRTLFCTEAL 25
>SRB6_CAEEL (P54141) Serpentine receptor class beta-6 (Protein srb-6)| Length = 337 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = -2 Query: 245 SALPLSWPSVFDLCACTLAALWRW*FLEFLIIISGAISQGCVVNSRPAVAPFLGV---DL 75 S PL + +F L CT ++ ++ + I ++ CVV + V PFL V DL Sbjct: 30 SVFPLLYLIIFKLRVCTFNDNIKFLYIVYFTQILISVLNNCVVFAHHVVIPFLAVSKCDL 89 Query: 74 LV 69 LV Sbjct: 90 LV 91
>TYR3_CAEEL (Q19673) Putative tyrosinase-like protein tyr-3 precursor| Length = 683 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 15/65 (23%) Frame = -3 Query: 379 AGACSGGRGADDWIWQPTI------GGQQPI---------RQRCTEAWMQLAQNRSCTGC 245 A C GG GAD I PT GQQ +C W Q Q RS G Sbjct: 545 AATCGGGGGADS-ISNPTTMPPATNNGQQNTPCDSPMCYNEDQCCPIWAQRGQCRSNPGY 603 Query: 244 QLCHC 230 C C Sbjct: 604 MTCQC 608
>FLCN_RAT (Q76JQ2) Folliculin (Birt-Hogg-Dube syndrome protein homolog)| Length = 579 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = -3 Query: 247 CQLCHCHGPRSLIC---VHA-LLRRCGAGD 170 C C HGPR+L C +HA L + G+GD Sbjct: 8 CHFCELHGPRTLFCTEVLHAPLPQGAGSGD 37
>FLCN_MOUSE (Q8QZS3) Folliculin| Length = 579 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = -3 Query: 247 CQLCHCHGPRSLIC---VHA-LLRRCGAGD 170 C C HGPR+L C +HA L + G+GD Sbjct: 8 CHFCELHGPRTLFCTEVLHAPLPQGAGSGD 37
>FLCN_HUMAN (Q8NFG4) Folliculin (Birt-Hogg-Dube syndrome protein) (BHD skin| lesion fibrofolliculoma protein) Length = 579 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = -3 Query: 247 CQLCHCHGPRSLICVHALLRRCGAGD 170 C C HGPR+L C L GD Sbjct: 8 CHFCELHGPRTLFCTEVLHAPLPQGD 33
>FLCN_BOVIN (Q3B7L5) Folliculin| Length = 579 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = -3 Query: 247 CQLCHCHGPRSLIC---VHA-LLRRCGAGD 170 C C HGPR+L C +HA L + G+GD Sbjct: 8 CHFCELHGPRTLFCTEVLHAPLPQGAGSGD 37
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/84 (26%), Positives = 35/84 (41%) Frame = +2 Query: 56 PNAILPAGPRPGKAPRLVWSSQHIPG*LRQK***EIREITSATTPQECMHTNQRPRAMTM 235 P A LP+ PRPG A S+ P ++ + P + ++RPR + Sbjct: 781 PTAELPSSPRPGSA-----SAGPAPA------------LSPSPVPDGPIDLSKRPRRQSP 823 Query: 236 AKLTPSATPILSKLHPCFGAPLSY 307 P+A P L+ H C +S+ Sbjct: 824 D--APTALPALADYHECTACRVSF 845
>YB88_YEAST (P38330) Protein YBR238C| Length = 731 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/71 (25%), Positives = 27/71 (38%) Frame = +1 Query: 58 QCNPTSRSTPRKGATAGLEFTTHPWLIAPEIIIRNSRNHQRHNAARVHAHKSKTEGHDNG 237 Q +P + P G G H + NS NH HN R H H + H N Sbjct: 65 QVSPANHFVPHFGGNIGANNNNH----LAQNNSNNSNNH--HNNNRNHHHNNNRNHHQNN 118 Query: 238 KADTQCNSDSE 270 ++ N+ ++ Sbjct: 119 HNHSKYNNSNQ 129
>MORC4_HUMAN (Q8TE76) MORC family CW-type zinc finger 4 (Zinc finger CW-type| coiled-coil domain protein 2) Length = 937 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 14 ANLNNKKITLRGLRPNAILPAGPRPGKAPRL 106 A LNNK I G+ ++LP+G ++P L Sbjct: 518 AGLNNKTIGYEGIHSPSVLPSGGEESRSPSL 548
>GPI11_ASPFU (Q4WIQ0) Glycosylphosphatidylinositol anchor biosynthesis protein| 11 Length = 297 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 10/42 (23%) Frame = +2 Query: 209 NQRPRAMTMAKLTPS----------ATPILSKLHPCFGAPLS 304 NQ A AKLTP+ ATP+LS L FGAPL+ Sbjct: 139 NQTHAAGLSAKLTPALLSLILTFLLATPVLSLLLVLFGAPLT 180
>RBCC1_HUMAN (Q8TDY2) RB1-inducible coiled-coil protein 1| Length = 1594 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +1 Query: 49 SQTQCNPTSRSTPRKGATAGLEFTTHP 129 S +Q +P S S+PR +TAG+ TT P Sbjct: 642 SVSQTSPQSASSPRMESTAGITTTTSP 668
>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral| proteinase D) (CANP D) (Small optic lobes protein) Length = 1594 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/73 (24%), Positives = 31/73 (42%) Frame = +1 Query: 64 NPTSRSTPRKGATAGLEFTTHPWLIAPEIIIRNSRNHQRHNAARVHAHKSKTEGHDNGKA 243 NPT + PR G + + P +A + +S NH H H S + + +G + Sbjct: 397 NPTQFTIPRNGVFIAVNEWSEP--MASSSSVSSSSNHHHH-------HHSNSNSNSSGNS 447 Query: 244 DTQCNSDSEQAAS 282 + N+ S + S Sbjct: 448 NIINNNSSSSSGS 460
>PFPI_PYRAB (Q9V1F8) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -3 Query: 322 GGQQPIRQRCTEAWMQLAQNRSCTGCQLCH-CHGPRSLICVHALLRRCG 179 GG+ P R R E +++A+ G + CHGP+ LI L R G Sbjct: 69 GGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRG 117
>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 815 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = -3 Query: 391 WCRWAGACS-GGRGADDWIWQPT 326 W R G CS G RG DDW +P+ Sbjct: 47 WARCCGCCSCGNRGDDDWGPEPS 69
>CLCF_ARATH (Q8RXR2) Chloride channel protein CLC-f (AtCLC-f)| Length = 781 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = -1 Query: 393 GGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLRIGVALGVSFA 235 GG H+V+D GF + L D++P + GC IGVA G+ A Sbjct: 98 GGGISNLHSVDDRNDEYGFDEEVLGDSAPPEWALLLIGC---LIGVAAGICVA 147
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 173 TSATTPQECMHTNQRPRAMTMAKLTPSATPILSKLHPCFGAPLSYGL 313 ++A T C H N PR +L+PS P+ + CFG+ + L Sbjct: 1062 SAAGTEALCRHDNSLPRPCPTEQLSPSHPPLAT----CFGSDVDIQL 1104
>GLNA_CRIGR (P04773) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 372 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +2 Query: 194 ECMHTNQRPRAMTMAKLTPSATPILSKLHPCFGAPLSYGLLSTNG 328 E NQ+P + ++S HP FG Y LL T+G Sbjct: 99 EVFKYNQKPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTLLGTDG 143
>PFPI_PYRFU (Q51732) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -3 Query: 322 GGQQPIRQRCTEAWMQLAQNRSCTGCQLCH-CHGPRSLICVHALLRRCG 179 GG+ P R R E +++A+ G + CHGP+ LI L R G Sbjct: 69 GGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKG 117
>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1842 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 53 RPNAILPAGPRPGKAPRLVWSSQHIP 130 RP+ LPAGP PG+ W S IP Sbjct: 498 RPSPRLPAGPGPGR-----WDSNRIP 518
>BAF1_KLUMA (P33293) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 496 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Frame = +1 Query: 139 APEIIIRNSRNHQRHNAARVHAHKSKTEGHDNG---------KADTQCNSDSEQAASMLR 291 +P + + + H H+ H H GH NG + + Q + + + AA Sbjct: 89 SPGVGVGDEHGHHHHHNMHAHHHHHHQNGHTNGHGNSGDDVSEQEAQQDDEDDDAAVTAA 148 Query: 292 CTAVVWAV 315 A V AV Sbjct: 149 IAAAVAAV 156
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 13/63 (20%) Frame = -3 Query: 256 CTGCQLCHC-------------HGPRSLICVHALLRRCGAGDFSNFLLLFLAQSARDVL* 116 CT C+ CHC H +C C G + ++ L Q+ D+L Sbjct: 636 CTECESCHCDEENMGEHCDQCQHCQFCYLCPLVCETVCAPGSYVDYFSSSLYQALADMLE 695 Query: 115 TPD 107 TP+ Sbjct: 696 TPE 698
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 108 SGVHNTSLADCARNNNKKFEKSPAPQRRKSACTQ-IKDR 221 SGV SL NN K ++P+P +RK + KDR Sbjct: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDR 42
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 108 SGVHNTSLADCARNNNKKFEKSPAPQRRKSACTQ-IKDR 221 SGV SL NN K ++P+P +RK + KDR Sbjct: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDR 42
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 108 SGVHNTSLADCARNNNKKFEKSPAPQRRKSACTQ-IKDR 221 SGV SL NN K ++P+P +RK + KDR Sbjct: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDR 42
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 108 SGVHNTSLADCARNNNKKFEKSPAPQRRKSACTQ-IKDR 221 SGV SL NN K ++P+P +RK + KDR Sbjct: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDR 42
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 108 SGVHNTSLADCARNNNKKFEKSPAPQRRKSACTQ-IKDR 221 SGV SL NN K ++P+P +RK + KDR Sbjct: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDR 42
>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 1839 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/28 (28%), Positives = 16/28 (57%) Frame = -2 Query: 140 AISQGCVVNSRPAVAPFLGVDLLVGLHW 57 +I GC++ +LG+ + +G+HW Sbjct: 1565 SIQDGCLITDNSGTKVYLGLSVRMGVHW 1592
>ENV_FIVU1 (Q03804) Env polyprotein (GP150 polyprotein) [Contains: Major| glycoprotein GP100; Glycoprotein GP36] Length = 856 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/80 (27%), Positives = 33/80 (41%) Frame = +1 Query: 58 QCNPTSRSTPRKGATAGLEFTTHPWLIAPEIIIRNSRNHQRHNAARVHAHKSKTEGHDNG 237 QCN T T ++ T W+ E +++ RHNAAR EG +N Sbjct: 416 QCNSTRNLTFAMRSSGDYGEITGAWI---EFGCHRNKSI-RHNAARFRIRCRWNEGDNNS 471 Query: 238 KADTQCNSDSEQAASMLRCT 297 DT + + A+ + CT Sbjct: 472 LIDTCGETQNVSGANPVDCT 491
>HIS6_PHOLL (Q7N6I5) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 258 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 387 VAGQGHAVEDVGQTIGFGSQPLVDNSP 307 VAG VED GQ + FG+ + NSP Sbjct: 79 VAGGIKTVEDAGQILSFGADKISINSP 105
>PFPI_PYRHO (O59413) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -3 Query: 322 GGQQPIRQRCTEAWMQLAQNRSCTGCQLCH-CHGPRSLICVHALLRRCG 179 GG+ P R R E + +A+ G + CHGP+ LI L R G Sbjct: 69 GGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKG 117
>WNT8_XENLA (P28026) Protein Wnt-8 precursor (XWnt-8)| Length = 358 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = -3 Query: 304 RQRCTEAWMQLAQN---RSCTGCQLCHCHGPRSLICVHALLRRCGAGDFSN 161 R C E+ +QLA + RS T + H S ++ L R C GDF N Sbjct: 63 RWNCPESTLQLATHNGLRSATR-ETSFVHAISSAGVMYTLTRNCSMGDFDN 112
>TMPS5_MOUSE (Q9ER04) Transmembrane protease, serine 5 (EC 3.4.21.-) (Spinesin)| Length = 455 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Frame = -3 Query: 331 PTIGGQQPIRQRCTEAW-------MQLAQNRSCTGCQLCHCHGPRSLICVHALLRRCGAG 173 PT+ Q P+ RCTE M+L R C R + + L GAG Sbjct: 3 PTLDDQSPMEIRCTEEGAGPGIFRMELGDQRQSISQSQRWCCLQRGCVILGVLGLLAGAG 62 Query: 172 DFSNFLLLFLAQSA 131 S L+L+L +A Sbjct: 63 IASWLLVLYLWPAA 76
>VPF_BPMU (Q01259) F protein (gpF) (Protein gp30)| Length = 439 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Frame = +1 Query: 64 NPTSRSTPRKGATAGLEFTTHPWLIA-PEIIIRNSRNHQ-------RHNAARVHAHKSKT 219 N S +T A + P L+A P+ ++ + NHQ R AR+ S+T Sbjct: 338 NGKSLATTADAALKPEDLQRLPSLMAKPQAVLWDRENHQLLYVVATRDGTARIVVRTSQT 397 Query: 220 EGHDNGKADTQCNSDSEQAASM 285 G N +AD + A S+ Sbjct: 398 VGRQNDRADVLVSISRVSAQSL 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,544,099 Number of Sequences: 219361 Number of extensions: 1529551 Number of successful extensions: 5257 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4989 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5256 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
