Clone Information

BLAST Search Result

Clone Name	rbart24h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC120991.3\| Oryza sativa (japonica cultivar-group) chromosome...	355	8e-95
2	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	355	8e-95
3	dbj\|AK070554.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	355	8e-95
4	dbj\|AK122177.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	250	3e-63
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	90	7e-15
6	dbj\|AP005886.3\| Oryza sativa (japonica cultivar-group) genomic D...	90	7e-15
7	dbj\|AP005568.3\| Oryza sativa (japonica cultivar-group) genomic D...	90	7e-15
8	ref\|NM_190069.1\| Oryza sativa (japonica cultivar-group), predic...	50	0.006
9	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.006
10	dbj\|AP003269.2\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.006
11	dbj\|AK108620.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.006
12	gb\|DQ485150.1\| Burkholderia cepacia MPS gene, partial sequence	46	0.097
13	gb\|AF185273.1\|AF185273 Burkholderia cepacia unknown sequence	46	0.097
14	ref\|XM_550168.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.5
15	ref\|XM_476345.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.5
16	gb\|AC145433.2\| Pan troglodytes BAC clone RP43-43I4 from 7, compl...	42	1.5
17	gb\|AC142317.1\| Pan troglodytes BAC clone RP43-52L16 from 7, comp...	42	1.5
18	emb\|Z86099.2\|HSV2HG52 Herpes simplex virus type 2 (strain HG52),...	42	1.5
19	gb\|AE005847.1\| Caulobacter crescentus CB15 section 173 of 359 of...	42	1.5
20	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
21	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
22	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
23	gb\|AC010002.6\|AC010002 Homo sapiens chromosome 7 clone RP11-194N...	42	1.5
24	dbj\|AP003608.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
25	dbj\|AP002522.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
26	dbj\|AP005869.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
27	dbj\|AK120703.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
28	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	42	1.5
29	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.5
30	emb\|AL954154.5\|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb...	42	1.5
31	emb\|AL713903.5\|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471...	42	1.5
32	ref\|XM_550169.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.0
33	ref\|XM_464952.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.0
34	ref\|NM_186687.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.0
35	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	40	6.0
36	ref\|XM_430357.1\| PREDICTED: Gallus gallus hypothetical gene supp...	40	6.0
37	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	6.0
38	gb\|AC146701.9\| Mus musculus chromosome 10, clone RP24-142C15, co...	40	6.0
39	gb\|AC132461.3\| Mus musculus chromosome 5 clone RP23-33C9, comple...	40	6.0
40	gb\|AC111096.15\| Mus musculus chromosome 3, clone RP23-174B18, co...	40	6.0
41	ref\|XM_949819.1\| Theileria annulata strain Ankara DEAD-box RNA h...	40	6.0
42	emb\|AL117328.5\|HSA494O16 Human DNA sequence from clone RP11-494O...	40	6.0
43	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	6.0
44	gb\|BC075800.1\| Homo sapiens protein kinase, cAMP-dependent, regu...	40	6.0
45	dbj\|AK128639.1\| Homo sapiens cDNA FLJ46798 fis, clone TRACH30316...	40	6.0
46	emb\|CR391109.1\| Gallus gallus finished cDNA, clone ChEST204m16	40	6.0
47	emb\|CR388456.1\| Gallus gallus finished cDNA, clone ChEST583b15	40	6.0
48	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
49	dbj\|AP005694.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
50	dbj\|AP005246.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
51	gb\|AC112685.16\| Mus musculus chromosome 3, clone RP23-340E10, co...	40	6.0
52	gb\|AC170751.2\| Mus musculus BAC clone CH25-484K21 from chromosom...	40	6.0
53	emb\|AL808021.12\| Mouse DNA sequence from clone RP23-349B15 on ch...	40	6.0

>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  355 bits (179), Expect = 8e-95
 Identities = 306/347 (88%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                         
Query: 100   aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 159
             ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 89775 aggcgaaagttgttgcaggtcgtttgccggaacaggagggaggagctgaaccccagccgc 89716

                                                                         
Query: 160   gcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 219
             |  | |  ||| || |||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 89715 gatcccaccaggtcaaactccagcaggttgtcctccatcatgtgaccgccgatcaccacc 89656

                                                                         
Query: 220   gacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcg 279
             |||||   ||  ||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 89655 gacgtttccgacgccacgccgccgtccaccacaccgaggcagagagcgccgcccttggtg 89596

                                                                         
Query: 280   gccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcaccaac 339
             |||||||||||||| |||||||||||||||||||||| ||||||| |||| | ||||| |
Sbjct: 89595 gccaccatcgagttcgccccgaacaccacccacgacgtggcctcgctctggaacaccagc 89536

                                                                         
Query: 340   tccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta-cac 398
             || ||||||||||||||||| |||||||| |||| | ||||||||||||||||||| |||
Sbjct: 89535 tcgaccgtcggcacggccggccccacgcgtgtgcccgccaccttgctcccgtcgtagcac 89476

                                                            
Query: 399   agcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
             ||||||||||| ||||||||| |||| || |||||||||| ||||||
Sbjct: 89475 agcttgaacggagccacggccggcactcgcgggatcatggacgtctc 89429



 Score =  297 bits (150), Expect = 2e-77
 Identities = 301/350 (86%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                         
Query: 97    ccaaggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagc 156
             |||||| | ||| ||||||||||||||||| | ||| | ||| ||||| |||| || |||
Sbjct: 96657 ccaaggtgaaagctgttgcaggtcgtctgcagcaacgggaggtaggaggtgaaacccagc 96598

                                                                         
Query: 157   ctcgcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcacc 216
             |  | || || ||| ||||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 96597 cgtgacccctccaggtcgaactccagcaggttgtcctccatcatgtgtccgccgatcacc 96538

                                                                         
Query: 217   accgacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 276
             |||||||||  ||||||  |||| || ||||| ||||||| ||||||||||||| |||||
Sbjct: 96537 accgacgtctccggggctacgcctccatccacaacgccgaagcagagcgcgccgtccttg 96478

                                                                         
Query: 277   gcggccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcacc 336
             | ||||||||| ||||| ||||||||||||||||||||| |||| | | |||||||||||
Sbjct: 96477 gtggccaccatagagttcgccccgaacaccacccacgacacggctttgctctgcagcacc 96418

                                                                         
Query: 337   aactccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta- 395
             | ||| || |||||||||||||| ||| ||||||||||||||||| || |||||||||| 
Sbjct: 96417 agctcgacggtcggcacggccggccccgcgcgggtgctccccaccatggtcccgtcgtag 96358

                                                               
Query: 396   cacagcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
             || ||||||||||||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 96357 caaagcttgaacggcgccacggccggcacacggggaatcatagccgtctc 96308



 Score =  278 bits (140), Expect = 1e-71
 Identities = 299/350 (85%), Gaps = 4/350 (1%)
 Strand = Plus / Minus

                                                                         
Query: 100   aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 159
             ||||| ||||||||||||||||||||||| ||| | ||| |||||||||| || |||| |
Sbjct: 92274 aggcgaaagttgttgcaggtcgtctgccgcaacgggaggtaggagctgaaacccagccgc 92215

                                                                         
Query: 160   gcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 219
             | || || ||| || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 92214 gacccctccaggtcaaactccagcaggttgtcctccatcatgtgcccgccgatcaccacc 92155

                                                                         
Query: 220   gacgtccg---cggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 276
             || | | |   | | || | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 92154 gatgacggatacagcgcggggccgccgtccaccacgccaaggcagagcgcgccgcccttg 92095

                                                                         
Query: 277   gcggccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcacc 336
             |||| |||||||||||| |||||| |||  | ||||||| |||||||  |||||||||||
Sbjct: 92094 gcgggcaccatcgagtttgccccgtacatgatccacgacacggcctccctctgcagcacc 92035

                                                                         
Query: 337   aactccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta- 395
             | ||| | ||||||||| || || ||| ||||||||||||| || |||| ||||||||| 
Sbjct: 92034 agctcaatcgtcggcaccgctggccccgcgcgggtgctccctactttgcgcccgtcgtag 91975

                                                               
Query: 396   cacagcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
             ||||||| |||||| ||||||||| |||| ||||||||| ||||||||||
Sbjct: 91974 cacagctcgaacggtgccacggccggcacacgggggatcgtggccgtctc 91925



 Score =  250 bits (126), Expect = 3e-63
 Identities = 214/242 (88%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                          
Query: 175    aactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggggcc 234
              |||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||  ||
Sbjct: 103640 aactccagcaggttgtcctccatcatgtgcccaccgatcacaaccgacgtctgcggctcc 103581

                                                                          
Query: 235    gcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcggccaccatcgagttg 294
              | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| 
Sbjct: 103580 gtgccggcgtccaccacgccgaggcagagcgcgcctcccttggtggccaccatcgagttc 103521

                                                                          
Query: 295    gccccgaacaccacccacgacgcggcctcgttctgcagcaccaactccaccgtcggcacg 354
              ||||||||||| |||||||| ||  ||  | | |||||||||| ||| |  |||||||||
Sbjct: 103520 gccccgaacacaacccacgaggcacccgtgctttgcagcaccagctcgatggtcggcacg 103461

                                                                          
Query: 355    gccgggcccacgcgggtgctccccaccttgctcccgtcgta-cacagcttgaacggcgcc 413
              ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct: 103460 gccggccccacgcgcgtgctccccaccttcctcccgtcgtagcacagcttgaacggctcc 103401

                
Query: 414    ac 415
              ||
Sbjct: 103400 ac 103399

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  355 bits (179), Expect = 8e-95
 Identities = 306/347 (88%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                            
Query: 100      aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 159
                ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 19489063 aggcgaaagttgttgcaggtcgtttgccggaacaggagggaggagctgaaccccagccgc 19489004

                                                                            
Query: 160      gcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 219
                |  | |  ||| || |||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 19489003 gatcccaccaggtcaaactccagcaggttgtcctccatcatgtgaccgccgatcaccacc 19488944

                                                                            
Query: 220      gacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcg 279
                |||||   ||  ||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 19488943 gacgtttccgacgccacgccgccgtccaccacaccgaggcagagagcgccgcccttggtg 19488884

                                                                            
Query: 280      gccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcaccaac 339
                |||||||||||||| |||||||||||||||||||||| ||||||| |||| | ||||| |
Sbjct: 19488883 gccaccatcgagttcgccccgaacaccacccacgacgtggcctcgctctggaacaccagc 19488824

                                                                            
Query: 340      tccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta-cac 398
                || ||||||||||||||||| |||||||| |||| | ||||||||||||||||||| |||
Sbjct: 19488823 tcgaccgtcggcacggccggccccacgcgtgtgcccgccaccttgctcccgtcgtagcac 19488764

                                                               
Query: 399      agcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
                ||||||||||| ||||||||| |||| || |||||||||| ||||||
Sbjct: 19488763 agcttgaacggagccacggccggcactcgcgggatcatggacgtctc 19488717



 Score =  297 bits (150), Expect = 2e-77
 Identities = 301/350 (86%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                            
Query: 97       ccaaggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagc 156
                |||||| | ||| ||||||||||||||||| | ||| | ||| ||||| |||| || |||
Sbjct: 19495945 ccaaggtgaaagctgttgcaggtcgtctgcagcaacgggaggtaggaggtgaaacccagc 19495886

                                                                            
Query: 157      ctcgcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcacc 216
                |  | || || ||| ||||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 19495885 cgtgacccctccaggtcgaactccagcaggttgtcctccatcatgtgtccgccgatcacc 19495826

                                                                            
Query: 217      accgacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 276
                |||||||||  ||||||  |||| || ||||| ||||||| ||||||||||||| |||||
Sbjct: 19495825 accgacgtctccggggctacgcctccatccacaacgccgaagcagagcgcgccgtccttg 19495766

                                                                            
Query: 277      gcggccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcacc 336
                | ||||||||| ||||| ||||||||||||||||||||| |||| | | |||||||||||
Sbjct: 19495765 gtggccaccatagagttcgccccgaacaccacccacgacacggctttgctctgcagcacc 19495706

                                                                            
Query: 337      aactccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta- 395
                | ||| || |||||||||||||| ||| ||||||||||||||||| || |||||||||| 
Sbjct: 19495705 agctcgacggtcggcacggccggccccgcgcgggtgctccccaccatggtcccgtcgtag 19495646

                                                                  
Query: 396      cacagcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
                || ||||||||||||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 19495645 caaagcttgaacggcgccacggccggcacacggggaatcatagccgtctc 19495596



 Score =  278 bits (140), Expect = 1e-71
 Identities = 299/350 (85%), Gaps = 4/350 (1%)
 Strand = Plus / Minus

                                                                            
Query: 100      aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 159
                ||||| ||||||||||||||||||||||| ||| | ||| |||||||||| || |||| |
Sbjct: 19491562 aggcgaaagttgttgcaggtcgtctgccgcaacgggaggtaggagctgaaacccagccgc 19491503

                                                                            
Query: 160      gcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 219
                | || || ||| || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 19491502 gacccctccaggtcaaactccagcaggttgtcctccatcatgtgcccgccgatcaccacc 19491443

                                                                            
Query: 220      gacgtccg---cggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 276
                || | | |   | | || | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 19491442 gatgacggatacagcgcggggccgccgtccaccacgccaaggcagagcgcgccgcccttg 19491383

                                                                            
Query: 277      gcggccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcacc 336
                |||| |||||||||||| |||||| |||  | ||||||| |||||||  |||||||||||
Sbjct: 19491382 gcgggcaccatcgagtttgccccgtacatgatccacgacacggcctccctctgcagcacc 19491323

                                                                            
Query: 337      aactccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta- 395
                | ||| | ||||||||| || || ||| ||||||||||||| || |||| ||||||||| 
Sbjct: 19491322 agctcaatcgtcggcaccgctggccccgcgcgggtgctccctactttgcgcccgtcgtag 19491263

                                                                  
Query: 396      cacagcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
                ||||||| |||||| ||||||||| |||| ||||||||| ||||||||||
Sbjct: 19491262 cacagctcgaacggtgccacggccggcacacgggggatcgtggccgtctc 19491213



 Score =  250 bits (126), Expect = 3e-63
 Identities = 214/242 (88%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                            
Query: 175      aactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggggcc 234
                |||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||  ||
Sbjct: 19502928 aactccagcaggttgtcctccatcatgtgcccaccgatcacaaccgacgtctgcggctcc 19502869

                                                                            
Query: 235      gcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcggccaccatcgagttg 294
                | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| 
Sbjct: 19502868 gtgccggcgtccaccacgccgaggcagagcgcgcctcccttggtggccaccatcgagttc 19502809

                                                                            
Query: 295      gccccgaacaccacccacgacgcggcctcgttctgcagcaccaactccaccgtcggcacg 354
                ||||||||||| |||||||| ||  ||  | | |||||||||| ||| |  |||||||||
Sbjct: 19502808 gccccgaacacaacccacgaggcacccgtgctttgcagcaccagctcgatggtcggcacg 19502749

                                                                            
Query: 355      gccgggcccacgcgggtgctccccaccttgctcccgtcgta-cacagcttgaacggcgcc 413
                ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct: 19502748 gccggccccacgcgcgtgctccccaccttcctcccgtcgtagcacagcttgaacggctcc 19502689

                  
Query: 414      ac 415
                ||
Sbjct: 19502688 ac 19502687

to top

>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full
            insert sequence
          Length = 1474

 Score =  355 bits (179), Expect = 8e-95
 Identities = 306/347 (88%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                        
Query: 100  aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 159
            ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 1343 aggcgaaagttgttgcaggtcgtttgccggaacaggagggaggagctgaaccccagccgc 1284

                                                                        
Query: 160  gcccgctgcagatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 219
            |  | |  ||| || |||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 1283 gatcccaccaggtcaaactccagcaggttgtcctccatcatgtgaccgccgatcaccacc 1224

                                                                        
Query: 220  gacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcg 279
            |||||   ||  ||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 1223 gacgtttccgacgccacgccgccgtccaccacaccgaggcagagagcgccgcccttggtg 1164

                                                                        
Query: 280  gccaccatcgagttggccccgaacaccacccacgacgcggcctcgttctgcagcaccaac 339
            |||||||||||||| |||||||||||||||||||||| ||||||| |||| | ||||| |
Sbjct: 1163 gccaccatcgagttcgccccgaacaccacccacgacgtggcctcgctctggaacaccagc 1104

                                                                        
Query: 340  tccaccgtcggcacggccgggcccacgcgggtgctccccaccttgctcccgtcgta-cac 398
            || ||||||||||||||||| |||||||| |||| | ||||||||||||||||||| |||
Sbjct: 1103 tcgaccgtcggcacggccggccccacgcgtgtgcccgccaccttgctcccgtcgtagcac 1044

                                                           
Query: 399  agcttgaacggcgccacggcccgcacccgggggatcatggccgtctc 445
            ||||||||||| ||||||||| |||| || |||||||||| ||||||
Sbjct: 1043 agcttgaacggagccacggccggcactcgcgggatcatggacgtctc 997

to top

>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full
            insert sequence
          Length = 1741

 Score =  250 bits (126), Expect = 3e-63
 Identities = 214/242 (88%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                        
Query: 175  aactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggggcc 234
            |||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||  ||
Sbjct: 1519 aactccagcaggttgtcctccatcatgtgcccaccgatcacaaccgacgtctgcggctcc 1460

                                                                        
Query: 235  gcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcggccaccatcgagttg 294
            | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| 
Sbjct: 1459 gtgccggcgtccaccacgccgaggcagagcgcgcctcccttggtggccaccatcgagttc 1400

                                                                        
Query: 295  gccccgaacaccacccacgacgcggcctcgttctgcagcaccaactccaccgtcggcacg 354
            ||||||||||| |||||||| ||  ||  | | |||||||||| ||| |  |||||||||
Sbjct: 1399 gccccgaacacaacccacgaggcacccgtgctttgcagcaccagctcgatggtcggcacg 1340

                                                                        
Query: 355  gccgggcccacgcgggtgctccccaccttgctcccgtcgta-cacagcttgaacggcgcc 413
            ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct: 1339 gccggccccacgcgcgtgctccccaccttcctcccgtcgtagcacagcttgaacggctcc 1280

              
Query: 414  ac 415
            ||
Sbjct: 1279 ac 1278

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                            
Query: 172      tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggg 231
                |||||| |||||||| | ||||||||| |||| || ||||||||||||| || |  ||| 
Sbjct: 15506035 tcgaacaccagcaggatctcctccatcatgtggccgccgatcaccaccggcgcctccggc 15505976

                                                         
Query: 232      gccgcgccgccgtccaccacgccgaggcagagcgcgccgcc 272
                ||||| ||||||||||||||| ||||||||||||| |||||
Sbjct: 15505975 gccgctccgccgtccaccacggcgaggcagagcgccccgcc 15505935



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                  
Query: 371      tgctccccaccttgctcccgtcgta-cacagcttgaacggcgccacggcc 419
                ||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 15505815 tgctctccaccttgctcccgtcgtagcacagctcgaacggcgccacggcc 15505766

to top

>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0689B09
          Length = 144932

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 172   tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggg 231
             |||||| |||||||| | ||||||||| |||| || ||||||||||||| || |  ||| 
Sbjct: 26890 tcgaacaccagcaggatctcctccatcatgtggccgccgatcaccaccggcgcctccggc 26831

                                                      
Query: 232   gccgcgccgccgtccaccacgccgaggcagagcgcgccgcc 272
             ||||| ||||||||||||||| ||||||||||||| |||||
Sbjct: 26830 gccgctccgccgtccaccacggcgaggcagagcgccccgcc 26790



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                               
Query: 371   tgctccccaccttgctcccgtcgta-cacagcttgaacggcgccacggcc 419
             ||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 26670 tgctctccaccttgctcccgtcgtagcacagctcgaacggcgccacggcc 26621

to top

>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1299_A11
          Length = 160099

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                          
Query: 172    tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggg 231
              |||||| |||||||| | ||||||||| |||| || ||||||||||||| || |  ||| 
Sbjct: 155327 tcgaacaccagcaggatctcctccatcatgtggccgccgatcaccaccggcgcctccggc 155268

                                                       
Query: 232    gccgcgccgccgtccaccacgccgaggcagagcgcgccgcc 272
              ||||| ||||||||||||||| ||||||||||||| |||||
Sbjct: 155267 gccgctccgccgtccaccacggcgaggcagagcgccccgcc 155227



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                
Query: 371    tgctccccaccttgctcccgtcgta-cacagcttgaacggcgccacggcc 419
              ||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 155107 tgctctccaccttgctcccgtcgtagcacagctcgaacggcgccacggcc 155058

to top

>ref|NM_190069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1269

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 172  tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 220
            |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 1181 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 1133

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 172      tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 220
                |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 41126162 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 41126210



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 246     caccacgccgaggcagagcgc 266
               |||||||||||||||||||||
Sbjct: 2776452 caccacgccgaggcagagcgc 2776432



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 246     caccacgccgaggcagagcg 265
               ||||||||||||||||||||
Sbjct: 2782536 caccacgccgaggcagagcg 2782517

to top

>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 172   tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 220
             |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 23217 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 23265

to top

>dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C07, full
            insert sequence
          Length = 1405

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 172  tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 220
            |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 1102 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 1054

to top

>gb|DQ485150.1| Burkholderia cepacia MPS gene, partial sequence
          Length = 1811

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 213  caccaccgacgtccgcggggccgcgcc 239
            ||||||||||||||||||| |||||||
Sbjct: 1638 caccaccgacgtccgcgggtccgcgcc 1664

to top

>gb|AF185273.1|AF185273 Burkholderia cepacia unknown sequence
          Length = 2351

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 213  caccaccgacgtccgcggggccgcgcc 239
            ||||||||||||||||||| |||||||
Sbjct: 1758 caccaccgacgtccgcgggtccgcgcc 1784

to top

>ref|XM_550168.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 246 caccacgccgaggcagagcgc 266
           |||||||||||||||||||||
Sbjct: 481 caccacgccgaggcagagcgc 461

to top

>ref|XM_476345.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1752

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 324  gttctgcagcaccaactccaccgtc 348
            |||||||||||||| ||||||||||
Sbjct: 1419 gttctgcagcaccacctccaccgtc 1395

to top

>gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence
          Length = 179409

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   cgaggcagagcgcgccgccct 274
             |||||||||||||||||||||
Sbjct: 52859 cgaggcagagcgcgccgccct 52879

to top

>gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, complete sequence
          Length = 147345

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    cgaggcagagcgcgccgccct 274
              |||||||||||||||||||||
Sbjct: 132948 cgaggcagagcgcgccgccct 132928

to top

>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 344   ccgtcggcacggccgggccca 364
             |||||||||||||||||||||
Sbjct: 83009 ccgtcggcacggccgggccca 83029

to top

>gb|AE005847.1| Caulobacter crescentus CB15 section 173 of 359 of the complete genome
          Length = 10886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 262  agcgcgccgcccttggcggccacca 286
            ||||||||||||||||||| |||||
Sbjct: 9834 agcgcgccgcccttggcggtcacca 9858

to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 324     gttctgcagcaccaactccaccgtc 348
               |||||||||||||| ||||||||||
Sbjct: 9075077 gttctgcagcaccatctccaccgtc 9075053



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 324     gttctgcagcaccaactccaccgtc 348
               |||||||||||||| ||||||||||
Sbjct: 8873317 gttctgcagcaccatctccaccgtc 8873293

to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
             complete sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 324   gttctgcagcaccaactccaccgtc 348
             |||||||||||||| ||||||||||
Sbjct: 58153 gttctgcagcaccacctccaccgtc 58177



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 251     cgccgaggcagagcgcgccg 270
               ||||||||||||||||||||
Sbjct: 7441037 cgccgaggcagagcgcgccg 7441056

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 235      gcgccgccgtccaccacgccg 255
                |||||||||||||||||||||
Sbjct: 20175099 gcgccgccgtccaccacgccg 20175079

to top

>gb|AC010002.6|AC010002 Homo sapiens chromosome 7 clone RP11-194N22, complete sequence
          Length = 169921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    cgaggcagagcgcgccgccct 274
              |||||||||||||||||||||
Sbjct: 150167 cgaggcagagcgcgccgccct 150147

to top

>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0007G12
          Length = 111819

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   gcgccgccgtccaccacgccg 255
             |||||||||||||||||||||
Sbjct: 41099 gcgccgccgtccaccacgccg 41079

to top

>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0009G03
          Length = 163526

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   caccacgccgaggcagagcgc 266
             |||||||||||||||||||||
Sbjct: 82129 caccacgccgaggcagagcgc 82109



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   caccacgccgaggcagagcg 265
             ||||||||||||||||||||
Sbjct: 88213 caccacgccgaggcagagcg 88194

to top

>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1026C12
          Length = 170240

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 324   gttctgcagcaccaactccaccgtc 348
             |||||||||||||| ||||||||||
Sbjct: 57452 gttctgcagcaccacctccaccgtc 57476

to top

>dbj|AK120703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P19, full
           insert sequence
          Length = 2394

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 246 caccacgccgaggcagagcgc 266
           |||||||||||||||||||||
Sbjct: 481 caccacgccgaggcagagcgc 461

to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 262     agcgcgccgcccttggcggccacca 286
               ||||||||||||| |||||||||||
Sbjct: 3289353 agcgcgccgccctgggcggccacca 3289377

to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 324     gttctgcagcaccaactccaccgtc 348
               |||||||||||||| ||||||||||
Sbjct: 9074962 gttctgcagcaccatctccaccgtc 9074938



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 324     gttctgcagcaccaactccaccgtc 348
               |||||||||||||| ||||||||||
Sbjct: 8873200 gttctgcagcaccatctccaccgtc 8873176

to top

>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151176

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 324   gttctgcagcaccaactccaccgtc 348
             |||||||||||||| ||||||||||
Sbjct: 61946 gttctgcagcaccatctccaccgtc 61922

to top

>emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471_C07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103007

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 324   gttctgcagcaccaactccaccgtc 348
             |||||||||||||| ||||||||||
Sbjct: 43016 gttctgcagcaccatctccaccgtc 43040

to top

>ref|XM_550169.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 caccacgccgaggcagagcg 265
           ||||||||||||||||||||
Sbjct: 348 caccacgccgaggcagagcg 329

to top

>ref|XM_464952.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   acaaattttgactgcaatct 30
            ||||||||||||||||||||
Sbjct: 1744 acaaattttgactgcaatct 1763

to top

>ref|NM_186687.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3015

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 cgccgaggcagagcgcgccg 270
           ||||||||||||||||||||
Sbjct: 571 cgccgaggcagagcgcgccg 552

to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    cgaacaccacccacgacgcg 318
              ||||||||||||||||||||
Sbjct: 400431 cgaacaccacccacgacgcg 400412

to top

>ref|XM_430357.1| PREDICTED: Gallus gallus hypothetical gene supported by CR353580;
           CR391109 (LOC426097), mRNA
          Length = 1518

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 cacggcccgcacccggggga 432
           ||||||||||||||||||||
Sbjct: 12  cacggcccgcacccggggga 31

to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 299     cgaacaccacccacgacgcg 318
               ||||||||||||||||||||
Sbjct: 1131154 cgaacaccacccacgacgcg 1131135

to top

>gb|AC146701.9| Mus musculus chromosome 10, clone RP24-142C15, complete sequence
          Length = 121683

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaacacacaaacaaattttg 20
              ||||||||||||||||||||
Sbjct: 121155 aaacacacaaacaaattttg 121136



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaacacacaaacaaattttg 20
              ||||||||||||||||||||
Sbjct: 116267 aaacacacaaacaaattttg 116248



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaacacacaaacaaattttg 20
              ||||||||||||||||||||
Sbjct: 113475 aaacacacaaacaaattttg 113456



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaacacacaaacaaattttg 20
              ||||||||||||||||||||
Sbjct: 108605 aaacacacaaacaaattttg 108586



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaacacacaaacaaattttg 20
              ||||||||||||||||||||
Sbjct: 104518 aaacacacaaacaaattttg 104499

to top

>gb|AC132461.3| Mus musculus chromosome 5 clone RP23-33C9, complete sequence
          Length = 196803

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    gcaagcacacatatcatctt 57
             ||||||||||||||||||||
Sbjct: 56902 gcaagcacacatatcatctt 56921

to top

>gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, complete sequence
          Length = 209936

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     acccaaggcggaagttgttgcagg 118
              ||||||||| ||||||||||||||
Sbjct: 191105 acccaaggctgaagttgttgcagg 191128

to top

>ref|XM_949819.1| Theileria annulata strain Ankara DEAD-box RNA helicase (TA03400)
           partial mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 accaactccaccgtcggcac 353
           ||||||||||||||||||||
Sbjct: 402 accaactccaccgtcggcac 383

to top

>emb|AL117328.5|HSA494O16 Human DNA sequence from clone RP11-494O16 on chromosome 22, complete
             sequence
          Length = 50502

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   cagggaggagctgaacccga 154
             ||||||||||||||||||||
Sbjct: 38983 cagggaggagctgaacccga 38964

to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 299     cgaacaccacccacgacgcg 318
               ||||||||||||||||||||
Sbjct: 1012114 cgaacaccacccacgacgcg 1012095

to top

>gb|BC075800.1| Homo sapiens protein kinase, cAMP-dependent, regulatory, type II,
           beta, mRNA (cDNA clone MGC:87711 IMAGE:30331962),
           complete cds
          Length = 3745

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 164 gctgcagatcgaactccagcaggt 187
           |||||||| |||||||||||||||
Sbjct: 317 gctgcagagcgaactccagcaggt 294

to top

>dbj|AK128639.1| Homo sapiens cDNA FLJ46798 fis, clone TRACH3031660, highly  similar
           to cAMP-dependent protein kinase type II-beta regulatory
           chain
          Length = 3470

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 164 gctgcagatcgaactccagcaggt 187
           |||||||| |||||||||||||||
Sbjct: 127 gctgcagagcgaactccagcaggt 104

to top

>emb|CR391109.1| Gallus gallus finished cDNA, clone ChEST204m16
          Length = 699

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 cacggcccgcacccggggga 432
           ||||||||||||||||||||
Sbjct: 58  cacggcccgcacccggggga 77

to top

>emb|CR388456.1| Gallus gallus finished cDNA, clone ChEST583b15
          Length = 909

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 cacggcccgcacccggggga 432
           ||||||||||||||||||||
Sbjct: 161 cacggcccgcacccggggga 180

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       acaaattttgactgcaatct 30
                ||||||||||||||||||||
Sbjct: 10505544 acaaattttgactgcaatct 10505563

to top

>dbj|AP005694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0063E14
          Length = 174415

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    acaaattttgactgcaatct 30
             ||||||||||||||||||||
Sbjct: 86712 acaaattttgactgcaatct 86731

to top

>dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0061L20
          Length = 138926

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   cgccgaggcagagcgcgccg 270
             ||||||||||||||||||||
Sbjct: 19351 cgccgaggcagagcgcgccg 19370

to top

>gb|AC112685.16| Mus musculus chromosome 3, clone RP23-340E10, complete sequence
          Length = 248750

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    acccaaggcggaagttgttgcagg 118
             ||||||||| ||||||||||||||
Sbjct: 12934 acccaaggctgaagttgttgcagg 12957

to top

>gb|AC170751.2| Mus musculus BAC clone CH25-484K21 from chromosome 10, complete
             sequence
          Length = 105368

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aaacacacaaacaaattttg 20
             ||||||||||||||||||||
Sbjct: 33049 aaacacacaaacaaattttg 33068



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aaacacacaaacaaattttg 20
             ||||||||||||||||||||
Sbjct: 28962 aaacacacaaacaaattttg 28981



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aaacacacaaacaaattttg 20
             ||||||||||||||||||||
Sbjct: 24092 aaacacacaaacaaattttg 24111



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aaacacacaaacaaattttg 20
             ||||||||||||||||||||
Sbjct: 21300 aaacacacaaacaaattttg 21319



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aaacacacaaacaaattttg 20
             ||||||||||||||||||||
Sbjct: 16412 aaacacacaaacaaattttg 16431

to top

>emb|AL808021.12| Mouse DNA sequence from clone RP23-349B15 on chromosome 11, complete
             sequence
          Length = 149561

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   actccagcaggttgtcctcc 195
             ||||||||||||||||||||
Sbjct: 28862 actccagcaggttgtcctcc 28881


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,421,051
Number of Sequences: 3902068
Number of extensions: 3421051
Number of successful extensions: 74867
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73867
Number of HSP's gapped (non-prelim): 980
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result