ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLY_PIARV (P03540) Glycoprotein polyprotein [Contains: Glycopro... 31 2.1
2NLTP1_PHAAU (P83434) Nonspecific lipid-transfer protein 1 (LTP 1... 30 2.7
3PP2A2_ARATH (Q07099) Serine/threonine-protein phosphatase PP2A-2... 29 6.1
4TNFL6_RAT (P36940) Tumor necrosis factor ligand superfamily memb... 29 7.9
5NLTP1_PRUDO (P82534) Nonspecific lipid-transfer protein 1 (LTP 1... 29 7.9
6NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precur... 29 7.9

>VGLY_PIARV (P03540) Glycoprotein polyprotein [Contains: Glycoprotein G1;|
           Glycoprotein G2]
          Length = 503

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 8   NSWSTKTTHMYSNSIVHTFEEEVAFPSMSTSNVTHGSVVHYTSSSRLEARGIPWNWI*QS 187
           N W  ++ ++Y+  ++  +EE      ++ +++   S+V YT +  L   GIP +     
Sbjct: 415 NDWLWESQNLYNEMLMKEYEERQGKTPLALTDICFWSLVFYTITVFLHIVGIPTHRHIIG 474

Query: 188 GGVVSPH 208
            G   PH
Sbjct: 475 DGCPKPH 481



to top

>NLTP1_PHAAU (P83434) Nonspecific lipid-transfer protein 1 (LTP 1) (NS-LTP1)|
          Length = 91

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 300 ADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTP 190
           AD R +CS   +   ++  I+P  A  LP KCG+  P
Sbjct: 42  ADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIP 78



to top

>PP2A2_ARATH (Q07099) Serine/threonine-protein phosphatase PP2A-2 catalytic|
           subunit (EC 3.1.3.16)
          Length = 306

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 318 CATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC*IQFHGM 160
           C  LG+AD++ LC    +  +  YN+        P KC +T   D   QF+ +
Sbjct: 17  CKPLGEADVKILCDQAKAILVEEYNVQ-------PVKCPVTVCGDIHGQFYDL 62



to top

>TNFL6_RAT (P36940) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily m
          Length = 278

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 53  VHTFEEEVAFPSMSTSNVTHGSVVHYTSSSRLEARGIPWNW 175
           V +FE+++A PS  +      SV H T + R  +R IP  W
Sbjct: 121 VSSFEKQIANPSTPSETKKPRSVAHLTGNPR--SRSIPLEW 159



to top

>NLTP1_PRUDO (P82534) Nonspecific lipid-transfer protein 1 (LTP 1) (Major|
           allergen Pru d 3)
          Length = 91

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 300 ADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTP 190
           AD R  C+       S+  ++P  A  LP KCG+  P
Sbjct: 42  ADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVP 78



to top

>NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 118

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = -3

Query: 330 SEACC--------ATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTP 190
           S ACC        A    AD R  C+   +   S+  ++   A  +P+KCG+T P
Sbjct: 51  SAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVTIP 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,737,733
Number of Sequences: 219361
Number of extensions: 938832
Number of successful extensions: 2236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top