ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATS10_MOUSE (P58459) ADAMTS-10 (EC 3.4.24.-) (A disintegrin and ... 32 0.57
2VMSA_HBVAY (P03139) Major surface antigen precursor 28 8.2

>ATS10_MOUSE (P58459) ADAMTS-10 (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 10)
           (ADAM-TS 10) (ADAM-TS10) (Fragment)
          Length = 450

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 23/78 (29%), Positives = 28/78 (35%)
 Frame = -3

Query: 244 SGWGSFLRWCCFNSWWKTRRCXXXXSVRPVSECGWCVSPWXXXXXXXXXXRVVSPGDGVS 65
           S WG     C      +T RC      +P  EC   + P            VV PGDG  
Sbjct: 356 SEWGECSTQCGLGQQQRTVRCTSHTG-QPSRECTEALRPSTMQQCEAKCDSVVPPGDGPE 414

Query: 64  LCISVSSHTMHCHLVHHF 11
            C  V+    +C LV  F
Sbjct: 415 ECKDVNK-VAYCPLVLKF 431



to top

>VMSA_HBVAY (P03139) Major surface antigen precursor|
          Length = 388

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 149 VWVVCQSVVWYWSPEGWVSCRLPRRRCIPLYFCQLAH 39
           VW+    ++WYW P  + S   P    +P++FC  A+
Sbjct: 352 VWLSVIWMMWYWGPSLY-SILSPFLPLLPIFFCLWAY 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,762,341
Number of Sequences: 219361
Number of extensions: 410637
Number of successful extensions: 946
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top