Clone Information

BLAST Search Result

Clone Name	rbart24g09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	190	3e-45
2	gb\|AC134233.3\| Oryza sativa (japonica cultivar-group) chromosome...	190	3e-45
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
4	dbj\|AK103088.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	190	3e-45
5	dbj\|AK106420.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	2e-21
6	dbj\|AK106358.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	109	7e-21
7	emb\|AL731628.4\|OSJN00282 Oryza sativa genomic DNA, chromosome 4,...	48	0.023
8	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.023
9	emb\|CT573326.1\| Pseudomonas entomophila str. L48 chromosome,comp...	44	0.37
10	ref\|XM_532851.2\| PREDICTED: Canis familiaris similar to N(4)-(be...	42	1.4
11	gb\|AE005110.1\| Halobacterium sp. NRC-1 section 141 of 170 of the...	42	1.4
12	gb\|AC101689.12\| Mus musculus chromosome 1, clone RP23-217C21, co...	40	5.7
13	ref\|NM_188788.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.7
14	gb\|AC136217.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
15	ref\|XM_467514.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.7
16	gb\|AC166488.5\| Mus musculus chromosome 1, clone RP23-245C4, comp...	40	5.7
17	gb\|AC150413.2\| Branchiostoma floridae clone CH302-61A17, complet...	40	5.7
18	gb\|AC135915.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
19	gb\|CP000115.1\| Nitrobacter winogradskyi Nb-255, complete genome	40	5.7
20	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	5.7
21	gb\|AC007789.1\| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ...	40	5.7
22	gb\|AC093712.2\| Canis familiaris clone RP81-229G11, complete sequ...	40	5.7
23	gb\|AC153857.7\| Mus musculus 6 BAC RP23-158G17 (Roswell Park Canc...	40	5.7
24	gb\|CP000282.1\| Saccharophagus degradans 2-40, complete genome	40	5.7
25	gb\|DQ387075.1\| HIV-1 isolate 13/ST2018 from Kenya pol protein (p...	40	5.7
26	gb\|AC107619.1\| Genomic sequence for Oryza sativa, Nipponbare str...	40	5.7
27	gb\|AC153927.6\| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer...	40	5.7
28	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
29	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
30	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
31	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.7
32	dbj\|AP002865.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
33	dbj\|AP005052.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
34	dbj\|AP004040.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
35	dbj\|AK109711.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
36	dbj\|AK101764.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
37	emb\|CR391975.8\| Zebrafish DNA sequence from clone CH211-276C20 i...	40	5.7
38	emb\|AL954180.6\| Zebrafish DNA sequence from clone CH211-222A10, ...	40	5.7
39	gb\|DQ294585.1\| Hyaloraphidium curvatum isolate AFTOL-ID-26 RNA p...	40	5.7
40	gb\|AC144455.5\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  190 bits (96), Expect = 3e-45
 Identities = 126/136 (92%)
 Strand = Plus / Minus

                                                                           
Query: 290     tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
               |||||||||||||  || ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 2945512 tcgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcc 2945453

                                                                           
Query: 350     aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945452 aggtccggcgtcgtcgggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 2945393

                               
Query: 410     ctggcaaacaggagcg 425
               || || ||| ||||||
Sbjct: 2945392 ctcgcgaacgggagcg 2945377



 Score =  137 bits (69), Expect = 3e-29
 Identities = 114/129 (88%)
 Strand = Plus / Minus

                                                                           
Query: 283     gatggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgcc 342
               |||||||||||||||||| |  || || |||||||||||||| ||||| | |||  ||||
Sbjct: 2934001 gatggcgtcgccgaggcatctcgccagcacgacgccgtcctccagcgccgcgcagccgcc 2933942

                                                                           
Query: 343     ctgcgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttcccctt 402
               |||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2933941 ctgccccaggtcgggcgtcatcgggtgcagcgcgtcgccggcgacgcacacgttcccctt 2933882

                        
Query: 403     gctgatgct 411
               |||||||||
Sbjct: 2933881 gctgatgct 2933873



 Score =  129 bits (65), Expect = 8e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                           
Query: 283     gatggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgcc 342
               |||||||||||||||||| |  || || |||||||||||||| ||||| | |||  ||||
Sbjct: 2924661 gatggcgtcgccgaggcatctcgccagcacgacgccgtcctccagcgccgcgcagccgcc 2924602

                                                                           
Query: 343     ctgcgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttcccctt 402
               |||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2924601 ctgccccaggtcgggcgtcatcgggtgcagcgcgtcgccggcgacgcacacgttcccctt 2924542

                        
Query: 403     gctgatgct 411
               || ||||||
Sbjct: 2924541 gcggatgct 2924533



 Score =  121 bits (61), Expect = 2e-24
 Identities = 67/69 (97%)
 Strand = Plus / Minus

                                                                           
Query: 63      tgccgcaatcgtagtccggcatcatgagcagcgtcttggcgagcaccccggacaacagct 122
               |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945751 tgccgcaatcgtagtcgggcatcatgagcagcgtcttggcgagcaccccggacaacagct 2945692

                        
Query: 123     tgtcccgca 131
               |||| ||||
Sbjct: 2945691 tgtcacgca 2945683



 Score =  111 bits (56), Expect = 2e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                           
Query: 286     ggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctg 345
               ||||||||||||||| |  || || |||||||||||||||||||| | |||  |||||||
Sbjct: 2941712 ggcgtcgccgaggcatctcgccagcacgacgccgtcctcgagcgccgcgcagccgccctg 2941653

                                                                           
Query: 346     cgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgct 405
                 | ||||| |||||| | ||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 2941652 gccaaggtcaggcgtcatcgggtgcagcgcgtcaccggcgacgcacgcgttccccttgct 2941593

                                   
Query: 406     gatgctggcaaacaggagcg 425
               |||||| || | ||||||||
Sbjct: 2941592 gatgctcgcgagcaggagcg 2941573



 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                           
Query: 290     tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
               |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 2976779 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 2976720

                                                                           
Query: 350     aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
               || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 2976719 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 2976660

                  
Query: 410     ctg 412
               |||
Sbjct: 2976659 ctg 2976657



 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                           
Query: 290     tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
               |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 2948383 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 2948324

                                                                           
Query: 350     aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
               || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 2948323 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 2948264

                  
Query: 410     ctg 412
               |||
Sbjct: 2948263 ctg 2948261



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 273      cggcgcctacgatggcgtcgccga 296
                |||||||||||| |||||||||||
Sbjct: 13754688 cggcgcctacgacggcgtcgccga 13754711

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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score =  190 bits (96), Expect = 3e-45
 Identities = 126/136 (92%)
 Strand = Plus / Minus

                                                                         
Query: 290   tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
             |||||||||||||  || ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 82999 tcgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcc 82940

                                                                         
Query: 350   aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82939 aggtccggcgtcgtcgggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 82880

                             
Query: 410   ctggcaaacaggagcg 425
             || || ||| ||||||
Sbjct: 82879 ctcgcgaacgggagcg 82864



 Score =  137 bits (69), Expect = 3e-29
 Identities = 114/129 (88%)
 Strand = Plus / Minus

                                                                         
Query: 283   gatggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgcc 342
             |||||||||||||||||| |  || || |||||||||||||| ||||| | |||  ||||
Sbjct: 71488 gatggcgtcgccgaggcatctcgccagcacgacgccgtcctccagcgccgcgcagccgcc 71429

                                                                         
Query: 343   ctgcgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttcccctt 402
             |||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 71428 ctgccccaggtcgggcgtcatcgggtgcagcgcgtcgccggcgacgcacacgttcccctt 71369

                      
Query: 403   gctgatgct 411
             |||||||||
Sbjct: 71368 gctgatgct 71360



 Score =  129 bits (65), Expect = 8e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                         
Query: 283   gatggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgcc 342
             |||||||||||||||||| |  || || |||||||||||||| ||||| | |||  ||||
Sbjct: 62148 gatggcgtcgccgaggcatctcgccagcacgacgccgtcctccagcgccgcgcagccgcc 62089

                                                                         
Query: 343   ctgcgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttcccctt 402
             |||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 62088 ctgccccaggtcgggcgtcatcgggtgcagcgcgtcgccggcgacgcacacgttcccctt 62029

                      
Query: 403   gctgatgct 411
             || ||||||
Sbjct: 62028 gcggatgct 62020



 Score =  121 bits (61), Expect = 2e-24
 Identities = 67/69 (97%)
 Strand = Plus / Minus

                                                                         
Query: 63    tgccgcaatcgtagtccggcatcatgagcagcgtcttggcgagcaccccggacaacagct 122
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83238 tgccgcaatcgtagtcgggcatcatgagcagcgtcttggcgagcaccccggacaacagct 83179

                      
Query: 123   tgtcccgca 131
             |||| ||||
Sbjct: 83178 tgtcacgca 83170



 Score =  111 bits (56), Expect = 2e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                         
Query: 286   ggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctg 345
             ||||||||||||||| |  || || |||||||||||||||||||| | |||  |||||||
Sbjct: 79199 ggcgtcgccgaggcatctcgccagcacgacgccgtcctcgagcgccgcgcagccgccctg 79140

                                                                         
Query: 346   cgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgct 405
               | ||||| |||||| | ||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 79139 gccaaggtcaggcgtcatcgggtgcagcgcgtcaccggcgacgcacgcgttccccttgct 79080

                                 
Query: 406   gatgctggcaaacaggagcg 425
             |||||| || | ||||||||
Sbjct: 79079 gatgctcgcgagcaggagcg 79060



 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                          
Query: 290    tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
              |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 114266 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 114207

                                                                          
Query: 350    aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
              || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 114206 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 114147

                 
Query: 410    ctg 412
              |||
Sbjct: 114146 ctg 114144



 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                         
Query: 290   tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
             |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 85870 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 85811

                                                                         
Query: 350   aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
             || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 85810 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 85751

                
Query: 410   ctg 412
             |||
Sbjct: 85750 ctg 85748

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  190 bits (96), Expect = 3e-45
 Identities = 126/136 (92%)
 Strand = Plus / Minus

                                                                           
Query: 290     tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
               |||||||||||||  || ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 2945623 tcgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcc 2945564

                                                                           
Query: 350     aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945563 aggtccggcgtcgtcgggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 2945504

                               
Query: 410     ctggcaaacaggagcg 425
               || || ||| ||||||
Sbjct: 2945503 ctcgcgaacgggagcg 2945488



 Score =  137 bits (69), Expect = 3e-29
 Identities = 114/129 (88%)
 Strand = Plus / Minus

                                                                           
Query: 283     gatggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgcc 342
               |||||||||||||||||| |  || || |||||||||||||| ||||| | |||  ||||
Sbjct: 2934112 gatggcgtcgccgaggcatctcgccagcacgacgccgtcctccagcgccgcgcagccgcc 2934053

                                                                           
Query: 343     ctgcgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttcccctt 402
               |||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2934052 ctgccccaggtcgggcgtcatcgggtgcagcgcgtcgccggcgacgcacacgttcccctt 2933993

                        
Query: 403     gctgatgct 411
               |||||||||
Sbjct: 2933992 gctgatgct 2933984



 Score =  129 bits (65), Expect = 8e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                           
Query: 283     gatggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgcc 342
               |||||||||||||||||| |  || || |||||||||||||| ||||| | |||  ||||
Sbjct: 2924772 gatggcgtcgccgaggcatctcgccagcacgacgccgtcctccagcgccgcgcagccgcc 2924713

                                                                           
Query: 343     ctgcgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttcccctt 402
               |||| ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2924712 ctgccccaggtcgggcgtcatcgggtgcagcgcgtcgccggcgacgcacacgttcccctt 2924653

                        
Query: 403     gctgatgct 411
               || ||||||
Sbjct: 2924652 gcggatgct 2924644



 Score =  121 bits (61), Expect = 2e-24
 Identities = 67/69 (97%)
 Strand = Plus / Minus

                                                                           
Query: 63      tgccgcaatcgtagtccggcatcatgagcagcgtcttggcgagcaccccggacaacagct 122
               |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945862 tgccgcaatcgtagtcgggcatcatgagcagcgtcttggcgagcaccccggacaacagct 2945803

                        
Query: 123     tgtcccgca 131
               |||| ||||
Sbjct: 2945802 tgtcacgca 2945794



 Score =  111 bits (56), Expect = 2e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                           
Query: 286     ggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctg 345
               ||||||||||||||| |  || || |||||||||||||||||||| | |||  |||||||
Sbjct: 2941823 ggcgtcgccgaggcatctcgccagcacgacgccgtcctcgagcgccgcgcagccgccctg 2941764

                                                                           
Query: 346     cgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgct 405
                 | ||||| |||||| | ||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 2941763 gccaaggtcaggcgtcatcgggtgcagcgcgtcaccggcgacgcacgcgttccccttgct 2941704

                                   
Query: 406     gatgctggcaaacaggagcg 425
               |||||| || | ||||||||
Sbjct: 2941703 gatgctcgcgagcaggagcg 2941684



 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                           
Query: 290     tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
               |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 2976890 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 2976831

                                                                           
Query: 350     aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
               || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 2976830 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 2976771

                  
Query: 410     ctg 412
               |||
Sbjct: 2976770 ctg 2976768



 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                           
Query: 290     tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
               |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 2948494 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 2948435

                                                                           
Query: 350     aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
               || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 2948434 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 2948375

                  
Query: 410     ctg 412
               |||
Sbjct: 2948374 ctg 2948372



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 273      cggcgcctacgatggcgtcgccga 296
                |||||||||||| |||||||||||
Sbjct: 13749663 cggcgcctacgacggcgtcgccga 13749686

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>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full
            insert sequence
          Length = 1518

 Score =  190 bits (96), Expect = 3e-45
 Identities = 126/136 (92%)
 Strand = Plus / Minus

                                                                        
Query: 290  tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
            |||||||||||||  || ||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 1059 tcgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcc 1000

                                                                        
Query: 350  aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  aggtccggcgtcgtcgggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 940

                            
Query: 410  ctggcaaacaggagcg 425
            || || ||| ||||||
Sbjct: 939  ctcgcgaacgggagcg 924



 Score =  121 bits (61), Expect = 2e-24
 Identities = 67/69 (97%)
 Strand = Plus / Minus

                                                                        
Query: 63   tgccgcaatcgtagtccggcatcatgagcagcgtcttggcgagcaccccggacaacagct 122
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 tgccgcaatcgtagtcgggcatcatgagcagcgtcttggcgagcaccccggacaacagct 1239

                     
Query: 123  tgtcccgca 131
            |||| ||||
Sbjct: 1238 tgtcacgca 1230

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>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full
            insert sequence
          Length = 1590

 Score =  111 bits (56), Expect = 2e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggcgtcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctg 345
            ||||||||||||||| |  || || |||||||||||||||||||| | |||  |||||||
Sbjct: 1227 ggcgtcgccgaggcatctcgccagcacgacgccgtcctcgagcgccgcgcagccgccctg 1168

                                                                        
Query: 346  cgccaggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgct 405
              | ||||| |||||| | ||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 1167 gccaaggtcaggcgtcatcgggtgcagcgcgtcaccggcgacgcacgcgttccccttgct 1108

                                
Query: 406  gatgctggcaaacaggagcg 425
            |||||| || | ||||||||
Sbjct: 1107 gatgctcgcgagcaggagcg 1088

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>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full
            insert sequence
          Length = 1661

 Score =  109 bits (55), Expect = 7e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 290  tcgccgaggcaccgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgcc 349
            |||| |||||||||||||||||||||||||||||||||||| | |||  |||||||  | 
Sbjct: 1082 tcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgccctggccg 1023

                                                                        
Query: 350  aggtccggcgtcgtagggtggagcgcgtcgccggcgacgcacacgttccccttgctgatg 409
            || || || ||||| |||||||  ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 1022 agctcgggggtcgtcgggtggaaggcgtcgccggcgacgcagacgttgcccctgctgatg 963

               
Query: 410  ctg 412
            |||
Sbjct: 962  ctg 960

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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 70/84 (83%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                         
Query: 302   cgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgccaggtc-cggcgt 360
             |||||||| |||| | ||||||| ||||| | |||| |||||||||||| |||  || ||
Sbjct: 37966 cgggcgagcacgatggcgtcctccagcgcggcgcacccgccctgcgccatgtcggggggt 37907

                                     
Query: 361   cgtagggtggagcgcgtcgccggc 384
             | | ||||||| ||||||||||||
Sbjct: 37906 catcgggtggaacgcgtcgccggc 37883

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 70/84 (83%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                            
Query: 302      cgggcgaggacgacgccgtcctcgagcgctgtgcacgcgccctgcgccaggtc-cggcgt 360
                |||||||| |||| | ||||||| ||||| | |||| |||||||||||| |||  || ||
Sbjct: 20934743 cgggcgagcacgatggcgtcctccagcgcggcgcacccgccctgcgccatgtcggggggt 20934684

                                        
Query: 361      cgtagggtggagcgcgtcgccggc 384
                | | ||||||| ||||||||||||
Sbjct: 20934683 catcgggtggaacgcgtcgccggc 20934660

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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 79      cggcatcatgagcagcgtcttg 100
               ||||||||||||||||||||||
Sbjct: 4929301 cggcatcatgagcagcgtcttg 4929280

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>ref|XM_532851.2| PREDICTED: Canis familiaris similar to
           N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
           precursor (Glycosylasparaginase)
           (Aspartylglucosaminidase)
           (N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase)
           (AGA) (LOC475638), mRNA
          Length = 1131

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 263 tccccggagccggcgcctacg 283
           |||||||||||||||||||||
Sbjct: 809 tccccggagccggcgcctacg 829

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>gb|AE005110.1| Halobacterium sp. NRC-1 section 141 of 170 of the complete genome
          Length = 11525

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 306  cgaggacgacgccgtcctcgagcgc 330
            |||||||||||||||| ||||||||
Sbjct: 9878 cgaggacgacgccgtcgtcgagcgc 9854

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>gb|AC101689.12| Mus musculus chromosome 1, clone RP23-217C21, complete sequence
          Length = 189241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cacttcacagcttgccgcaa 70
              ||||||||||||||||||||
Sbjct: 146972 cacttcacagcttgccgcaa 146991

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>ref|NM_188788.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 gtggagcgcgtcgccggcga 386
           ||||||||||||||||||||
Sbjct: 591 gtggagcgcgtcgccggcga 572

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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14,
              complete sequence
          Length = 159035

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 240    cctccacgaccctctccctctgct 263
              ||||| ||||||||||||||||||
Sbjct: 118717 cctccccgaccctctccctctgct 118694

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>ref|XM_467514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2907

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 cctccacgaccctctccctctgct 263
           ||||| ||||||||||||||||||
Sbjct: 402 cctccccgaccctctccctctgct 379

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>gb|AC166488.5| Mus musculus chromosome 1, clone RP23-245C4, complete sequence
          Length = 194413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     cacttcacagcttgccgcaa 70
              ||||||||||||||||||||
Sbjct: 158566 cacttcacagcttgccgcaa 158547

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>gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complete sequence
          Length = 240260

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aaaaagacagtacgcatatg 28
             ||||||||||||||||||||
Sbjct: 87495 aaaaagacagtacgcatatg 87514

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>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0082F22, complete sequence
          Length = 176038

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 273    cggcgcctacgatggcgtcgccga 296
              |||||||||||| |||||||||||
Sbjct: 116821 cggcgcctacgacggcgtcgccga 116798

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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 179    tacgacatcgcgatcacctgcgcg 202
              ||||||||| ||||||||||||||
Sbjct: 160438 tacgacatctcgatcacctgcgcg 160415

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 89      agcagcgtcttggcgagcac 108
               ||||||||||||||||||||
Sbjct: 1568588 agcagcgtcttggcgagcac 1568607

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>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    gtggagcgcgtcgccggcga 386
              ||||||||||||||||||||
Sbjct: 154863 gtggagcgcgtcgccggcga 154844

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>gb|AC093712.2| Canis familiaris clone RP81-229G11, complete sequence
          Length = 133924

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  accctctccctctgctcccc 267
            ||||||||||||||||||||
Sbjct: 1391 accctctccctctgctcccc 1410

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>gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ctctccctctgctccccgga 270
              ||||||||||||||||||||
Sbjct: 205234 ctctccctctgctccccgga 205215

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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    gcacaaagctcaccacagcg 148
              ||||||||||||||||||||
Sbjct: 455591 gcacaaagctcaccacagcg 455572

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>gb|DQ387075.1| HIV-1 isolate 13/ST2018 from Kenya pol protein (pol) gene,
          partial cds
          Length = 291

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 cagaaaaggcagtacataca 52
          ||||||||||||||||||||
Sbjct: 50 cagaaaaggcagtacataca 69

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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   cggcgcctacgatggcgtcgccga 296
             |||||||||||| |||||||||||
Sbjct: 31216 cggcgcctacgacggcgtcgccga 31239

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>gb|AC153927.6| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ctctccctctgctccccgga 270
             ||||||||||||||||||||
Sbjct: 73680 ctctccctctgctccccgga 73661

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 240      cctccacgaccctctccctctgct 263
                ||||| ||||||||||||||||||
Sbjct: 29470692 cctccccgaccctctccctctgct 29470669



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 273      cggcgcctacgatggcgtcgccga 296
                |||||||||||| |||||||||||
Sbjct: 13154044 cggcgcctacgacggcgtcgccga 13154021

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 240      cctccacgaccctctccctctgct 263
                ||||| ||||||||||||||||||
Sbjct: 29922173 cctccccgaccctctccctctgct 29922196

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 367     gtggagcgcgtcgccggcga 386
               ||||||||||||||||||||
Sbjct: 8190742 gtggagcgcgtcgccggcga 8190723

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     gccctgcgccaggtccggcg 359
               ||||||||||||||||||||
Sbjct: 4849631 gccctgcgccaggtccggcg 4849650



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 288     cgtcgccgaggcaccgggcgaggacgacgccgtcctcgag 327
               |||||||||| | ||||||| || || |||||||||||||
Sbjct: 2324521 cgtcgccgagccgccgggcgcgggcggcgccgtcctcgag 2324482

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>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034C11
          Length = 139399

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    gtggagcgcgtcgccggcga 386
              ||||||||||||||||||||
Sbjct: 108460 gtggagcgcgtcgccggcga 108441

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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654B04
          Length = 156907

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   cctccacgaccctctccctctgct 263
             ||||| ||||||||||||||||||
Sbjct: 22449 cctccccgaccctctccctctgct 22472

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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_D06
          Length = 112768

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   cctccacgaccctctccctctgct 263
             ||||| ||||||||||||||||||
Sbjct: 79138 cctccccgaccctctccctctgct 79161

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>dbj|AK109711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H01, full
           insert sequence
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 273 cggcgcctacgatggcgtcgccga 296
           |||||||||||| |||||||||||
Sbjct: 884 cggcgcctacgacggcgtcgccga 861

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>dbj|AK101764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064D18, full
           insert sequence
          Length = 2907

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 cctccacgaccctctccctctgct 263
           ||||| ||||||||||||||||||
Sbjct: 402 cctccccgaccctctccctctgct 379

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>emb|CR391975.8| Zebrafish DNA sequence from clone CH211-276C20 in linkage group 18,
            complete sequence
          Length = 122652

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 132  caaagctcaccacagcgtga 151
            ||||||||||||||||||||
Sbjct: 9222 caaagctcaccacagcgtga 9241

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>emb|AL954180.6| Zebrafish DNA sequence from clone CH211-222A10, complete sequence
          Length = 225504

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gaagaataaaaaagacagta 20
              ||||||||||||||||||||
Sbjct: 104953 gaagaataaaaaagacagta 104934

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>gb|DQ294585.1| Hyaloraphidium curvatum isolate AFTOL-ID-26 RNA polymerase II largest
            subunit (RPB1) gene, partial cds
          Length = 3303

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gcgaggacgacgccgtcctc 324
            ||||||||||||||||||||
Sbjct: 1808 gcgaggacgacgccgtcctc 1789

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>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0086G17, complete sequence
          Length = 134631

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 240   cctccacgaccctctccctctgct 263
             ||||| ||||||||||||||||||
Sbjct: 54962 cctccccgaccctctccctctgct 54939


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,056,210
Number of Sequences: 3902068
Number of extensions: 3056210
Number of successful extensions: 90093
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89223
Number of HSP's gapped (non-prelim): 861
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result