Clone Name | rbart24g07 |
---|---|
Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 53.1 bits (126), Expect = 3e-07 Identities = 23/35 (65%), Positives = 30/35 (85%) Frame = -2 Query: 463 FSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 359 FS+R+TS+SGKK++A +VIPANWRP+ Y S VQF Sbjct: 234 FSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 52.8 bits (125), Expect = 4e-07 Identities = 22/35 (62%), Positives = 30/35 (85%) Frame = -2 Query: 463 FSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 359 FS+R+TS+SGKK++A ++IPANWRP+ Y S VQF Sbjct: 156 FSIRLTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/35 (57%), Positives = 28/35 (80%) Frame = -2 Query: 463 FSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 359 FS+R+TS+ G LV ++VIPANW+P+T Y S +QF Sbjct: 210 FSIRLTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 1/36 (2%) Frame = -2 Query: 463 FSMRITS-DSGKKLVANNVIPANWRPNTDYRSFVQF 359 F++R+TS +S K +VA NVIPANW+P+ YRS V F Sbjct: 224 FNIRLTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/35 (60%), Positives = 28/35 (80%), Gaps = 1/35 (2%) Frame = -2 Query: 460 SMRITS-DSGKKLVANNVIPANWRPNTDYRSFVQF 359 S+R+TS +SGK +VA+NVIPANW+P Y+S V F Sbjct: 239 SLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 37.4 bits (85), Expect = 0.019 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -2 Query: 463 FSMRITSD-SGKKLVANNVIPANWRPNTDYRSFVQF 359 F++R+TS SGKK++A VIP W P Y S V F Sbjct: 222 FNIRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 35.4 bits (80), Expect = 0.073 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -2 Query: 463 FSMRITS-DSGKKLVANNVIPANWRPNTDYRSFVQFS 356 FS+++T+ +GK L A +V+P NW P Y S + FS Sbjct: 225 FSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 33.5 bits (75), Expect = 0.28 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 463 FSMRITSDSGKKLVANNVIPANWRPNTDYRS 371 F++R T++ G K A +VIP W+ +T Y S Sbjct: 232 FTVRYTTEGGTKTEAEDVIPEGWKADTSYES 262
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -2 Query: 463 FSMRITSDSGKK-LVANNVIPANWRPNTDYRSFVQFS 356 FS+++T+ S K L A +VIP+NW P Y S + FS Sbjct: 232 FSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268
>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)| Length = 866 Score = 32.3 bits (72), Expect = 0.62 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Frame = -1 Query: 458 HAHHQRLRQEAGGQQCHPGQLEAQHRLPL------LRPVQLIGPDRPMSGHVRLHHARMH 297 H H Q+ +Q+ QQ HPGQ + Q L L + + P S H + Sbjct: 189 HTHQQQQQQQQ--QQQHPGQQQHQLNCTLSNGGGALYTISSVHQFGPASNHNTSSSSPSS 246 Query: 296 ACMRSGPSAGCSSS 255 + S P +GCSS+ Sbjct: 247 SAAHSSPDSGCSSA 260
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 14/67 (20%) Frame = -1 Query: 455 AHHQRLRQEAGGQQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL---- 315 + HQ ++Q++ HP Q + QH++P + Q +GP P + GHV + Sbjct: 1465 SQHQTIQQQSN----HPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGM 1520 Query: 314 -HHARMH 297 HH + H Sbjct: 1521 GHHMQQH 1527
>MPAH1_HOLLA (P43216) Major pollen allergen Hol l 1 precursor (Hol l I) (Hol l| 1.0101 and 1.0102) Length = 265 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 463 FSMRITSDSGKKLVANNVIPANWRPNTDYRS 371 F++R T++ G K A +VIP W+ +T Y + Sbjct: 234 FTVRYTTEGGTKGEAEDVIPEGWKADTAYEA 264
>EXPA7_ARATH (Q9LN94) Alpha-expansin 7 precursor (AtEXPA7) (At-EXP7) (AtEx7)| (Ath-ExpAlpha-1.26) Length = 262 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -2 Query: 460 SMRITS-DSGKKLVANNVIPANWRPNTDYRSFVQF 359 S R+TS +G+ + A NV PANW Y+S F Sbjct: 227 SFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANF 261
>EXP15_ARATH (O80622) Alpha-expansin 15 precursor (AtEXPA15) (At-EXP15) (AtEx15)| (Ath-ExpAlpha-1.3) Length = 248 Score = 29.6 bits (65), Expect = 4.0 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = -2 Query: 460 SMRITSDSGKKLVANNVIPANW 395 S ++T+ G+ +V+NN+ PA+W Sbjct: 215 SFKVTASDGRTVVSNNIAPASW 236
>MPAL1_LOLPR (P14946) Pollen allergen Lol p 1 precursor (Lol p I) (Allergen R7)| Length = 263 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -2 Query: 463 FSMRITSDSGKKLVANNVIPANWRPNTDY 377 F++R T++ G K +VIP W+ +T Y Sbjct: 232 FTVRYTTEGGTKSEFEDVIPEGWKADTSY 260
>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 448 TSDSGKKLVANNVIPANWRPNTDY 377 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 448 TSDSGKKLVANNVIPANWRPNTDY 377 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 448 TSDSGKKLVANNVIPANWRPNTDY 377 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)| (AtEx17) (Ath-ExpAlpha-1.13) Length = 255 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -2 Query: 460 SMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 359 S ++ G A NV+P+NWR ++S V F Sbjct: 222 SFKVQLSDGSIKAALNVVPSNWRFGQSFKSNVNF 255 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,959,401 Number of Sequences: 219361 Number of extensions: 1290747 Number of successful extensions: 3848 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3847 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)