ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M29280.1|BLYLEC Barley root-specific lectin mRNA, complete cds 464 e-127
2gb|M25537.1|WHTAGGTDD Wheat (T.aestivum) germ agglutinin isolect... 406 e-110
3gb|M25536.1|WHTAGGTA Wheat (T.aestivum) germ agglutinin isolecti... 389 e-105
4gb|J02961.1|WHTAGGTD Wheat (T.durum) germ agglutinin mRNA, 3' end 355 8e-95
5ref|XM_474630.1| Oryza sativa (japonica cultivar-group), predic... 44 0.40
6emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4,... 44 0.40
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
8dbj|AK103206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
9gb|AF140682.1|AF140682 Oryza sativa subsp. japonica cultivar EY1... 44 0.40
10gb|AF140681.1|AF140681 Oryza sativa subsp. indica lectin gene, p... 44 0.40
11gb|AF140680.1|AF140680 Oryza rufipogon lectin gene, partial cds 44 0.40
12gb|AF140679.1|AF140679 Oryza sativa subsp. japonica cultivar jav... 44 0.40
13gb|M24504.1|RICLECTIN Oryza sativa lectin mRNA, complete cds 44 0.40
14gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 42 1.6
15gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosom... 42 1.6
16gb|AC084706.11| Homo sapiens chromosome , clone RP11-91P17, comp... 42 1.6
17gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, com... 42 1.6
18gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Ho... 42 1.6
19emb|AJ329217.1|HSA329217 Homo sapiens genomic sequence surroundi... 42 1.6
20dbj|AP004929.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.6
21gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Canc... 42 1.6
22ref|XM_469829.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
23gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.2
24gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 40 6.2
25gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 40 6.2
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
27ref|XM_001004096.1| PREDICTED: Mus musculus chromatin modifying ... 40 6.2
28ref|XM_917071.2| PREDICTED: Mus musculus chromatin modifying pro... 40 6.2
29ref|XM_126613.6| PREDICTED: Mus musculus chromatin modifying pro... 40 6.2
30gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome... 40 6.2
31emb|CR718767.2|CNS0GHJP Tetraodon nigroviridis full-length cDNA 40 6.2
32gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosom... 40 6.2
33gb|AC113603.6| Homo sapiens chromosome 8, clone RP11-101N9, comp... 40 6.2
34gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 6.2
35dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.2
36gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, compl... 40 6.2
37gb|AC012339.8| Homo sapiens chromosome 8, clone RP11-31K23, comp... 40 6.2
38gb|AC068102.5| Homo sapiens chromosome 8, clone RP11-333M8, comp... 40 6.2
39gb|AC010482.8| Homo sapiens chromosome 5 clone CTD-2318J2, compl... 40 6.2
40gb|AC159254.2| Mus musculus BAC clone RP24-112C23 from chromosom... 40 6.2
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
42gb|AC102861.12| Mus musculus chromosome 7, clone RP24-532A16, co... 40 6.2
43gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 40 6.2
44emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chr... 40 6.2 
>gb|M29280.1|BLYLEC Barley root-specific lectin mRNA, complete cds
          Length = 972

 Score =  464 bits (234), Expect = e-127
 Identities = 252/258 (97%)
 Strand = Plus / Minus

                                                                       
Query: 203 gcaacctgcacgtcatattgcaaggctagagaattattaaggactggtgctaaaagtaag 262
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 791 gcaacctgcacgtcatattgcaaggctggagaattattaaggactagtgctaaaagtaag 732

                                                                       
Query: 263 cgaagggagaccgtacgtggcaacgaaagtgccacggattattcgtcgttgcaataatac 322
            ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 731 tgaagggagaccgtacgtggcaacaaaactgccacggattattcgtcgttgcaataatac 672

                                                                       
Query: 323 tgccattagcaagatcatcattctgcgacaagagtggagttggcggcgatggcctcggcg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgccattagcaagatcatcattctgcgacaagagtggagttggcggcgatggcctcggcg 612

                                                                       
Query: 383 aggacaccgtcgcagccgccgctctggcaacctgcgccgcagtagcccgggccgatgcca 442
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagacaccgtcgcagccgccgctctggcaacctgcgccgcagtagcccgggccgatgcca 552

                             
Query: 443 caggatccccacttgctg 460
           ||||||||||||||||||
Sbjct: 551 caggatccccacttgctg 534



 Score =  301 bits (152), Expect = 1e-78
 Identities = 161/164 (98%)
 Strand = Plus / Minus

                                                                       
Query: 14  atatattgcaacgaaatcatggagtactccaacattacaacggggatgcatgcatcctga 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 atatattgcaacgaaatcatggagtactccaacattacaacggggatgcatgcatcctga 893

                                                                       
Query: 74  caactgtacgtacataacaagaaagaactaaatttgtggcaacaatagtgcaccctatat 133
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 892 caactgtacgtacgtaacaagaaagaactaaatttgtggcaacaatagtacaccctatat 833

                                                       
Query: 134 tgccacacagtacttctcactgcaatatttccatgcatgtagca 177
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 832 tgccacacagtacttctcactgcaatatgtccatgcatgtagca 789
to top
>gb|M25537.1|WHTAGGTDD Wheat (T.aestivum) germ agglutinin isolectin D, complete cds
          Length = 998

 Score =  406 bits (205), Expect = e-110
 Identities = 406/462 (87%), Gaps = 22/462 (4%)
 Strand = Plus / Minus

                                                                       
Query: 8   atggcaatatattgcaacgaaatcatggagtactccaacattacaacggggatgcatgca 67
           |||| |||||||||||||||||||| | ||||||||||||||||||| | ||||||||||
Sbjct: 976 atggtaatatattgcaacgaaatcacgaagtactccaacattacaacagcgatgcatgca 917

                                                                       
Query: 68  tcctgacaactgtacgtacataacaagaaagaactaaatttgtggcaacaatagtgcacc 127
           |||||||||| |   || ||||||||||||  |||||||||| |||||||||||| ||||
Sbjct: 916 tcctgacaacag---gt-cataacaagaaa--actaaatttgcggcaacaatagtacacc 863

                                                                       
Query: 128 ctatattgccacacagtac-ttctcactgcaatatttccatgcatgtagcacatcagtat 186
           ||||||||||||||||||| |||||||||||||||| ||||||||||| |||| || |||
Sbjct: 862 ctatattgccacacagtactttctcactgcaatattcccatgcatgtaccacagcaatat 803

                                                                       
Query: 187 tttgtttctgctgcgggcaacctgcacgtcatattgcaaggctagagaattattaaggac 246
           ||||||||||||||  | |||||||| |||| ||||||| ||||||||||||||||| ||
Sbjct: 802 tttgtttctgctgc-agtaacctgcatgtcacattgcaa-gctagagaattattaagtac 745

                                                                       
Query: 247 tgg----tgctaaaagtaagcgaagggagaccgt-acgtggcaacgaaagtgccacggat 301
           | |    ||||||||||||| ||||||| ||||| ||||||||| |||| ||||||||||
Sbjct: 744 tagctaatgctaaaagtaagtgaagggaaaccgtaacgtggcaatgaaactgccacggat 685

                                                                       
Query: 302 tattcgtcgttgcaataatactgccattagcaa----gatcatcattctgcgacaagagt 357
           |||||||||||||   |||||||||| ||| ||    |||||||||||||||| ||||||
Sbjct: 684 tattcgtcgttgc---aatactgcca-taggaaggtcgatcatcattctgcgagaagagt 629

                                                                       
Query: 358 ggagttggcggcgatggcctcggcgaggacaccgtcgcagccgccgctctggcaacctgc 417
           ||||||||||| ||||||  |||| | |||| |||| ||||||||||||||||| |||||
Sbjct: 628 ggagttggcggtgatggcgccggcaaagacagcgtcacagccgccgctctggcagcctgc 569

                                                     
Query: 418 gccgcagtagcccgggccgatgccacaggatccccacttgct 459
            ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 568 accgcaatagcccgggccgatgccacaggatccccacttgct 527
to top
>gb|M25536.1|WHTAGGTA Wheat (T.aestivum) germ agglutinin isolectin A, complete cds
          Length = 998

 Score =  389 bits (196), Expect = e-105
 Identities = 402/459 (87%), Gaps = 20/459 (4%)
 Strand = Plus / Minus

                                                                       
Query: 8   atggcaatatattgcaacgaaatcatggagtactccaacattacaacggggatgcatgca 67
           |||| |||||||||||||||||||| | ||||||||||||||||||| |  |||||||||
Sbjct: 989 atggtaatatattgcaacgaaatcacgaagtactccaacattacaacagccatgcatgca 930

                                                                       
Query: 68  tcctgacaactgtacgtacataacaagaaagaactaaatttgtggcaacaatagtgcacc 127
           |||||||||| |   || ||||||||||||  ||||| |||| |||||||||||  ||||
Sbjct: 929 tcctgacaacag---gt-cataacaagaaa--actaa-tttgcggcaacaatagcacacc 877

                                                                       
Query: 128 ctatattgccacacagtactt-ctcactgcaatatttccatgcatgtagcacatcagtat 186
           ||||||||||||||||||||| |||||||||||||||||||||||| |  ||| || |||
Sbjct: 876 ctatattgccacacagtactttctcactgcaatatttccatgcatgcacgacagcaatat 817

                                                                       
Query: 187 tttgtttctgctgcgggcaacctgcacgtcatattgcaaggctagagaattattaaggac 246
           |||||||||||||| |  ||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 816 tttgtttctgctgcagt-aacctgcacatcatattgcaag-ctagagaattattaaggac 759

                                                                       
Query: 247 tggtgct--aaaagtaagcgaagggagaccgtacgtggcaacgaaagtgccacggattat 304
           | || ||  |||||||||  |||||| |||||| ||||||| || | |||||||||||||
Sbjct: 758 tagtactctaaaagtaagtcaagggaaaccgtaggtggcaatgagattgccacggattat 699

                                                                       
Query: 305 tcgtcgttgcaataatactgccattagcaagat----catcattctgcgacaagagtgga 360
           ||||||||||||||   ||||||| ||||||||    |||||||||  || |||||||||
Sbjct: 698 tcgtcgttgcaata---ctgccat-agcaagattgatcatcattcttggagaagagtgga 643

                                                                       
Query: 361 gttggcggcgatggcctcggcgaggacaccgtcgcagccgccgctctggcaacctgcgcc 420
           |||||||| |||||||||||||| |||||| ||||||||||| |||||||| ||||| ||
Sbjct: 642 gttggcggtgatggcctcggcgaagacaccatcgcagccgccactctggcagcctgcacc 583

                                                  
Query: 421 gcagtagcccgggccgatgccacaggatccccacttgct 459
           ||| |||||||||||||||||||||||||||||||||||
Sbjct: 582 gcaatagcccgggccgatgccacaggatccccacttgct 544
to top
>gb|J02961.1|WHTAGGTD Wheat (T.durum) germ agglutinin mRNA, 3' end
          Length = 898

 Score =  355 bits (179), Expect = 8e-95
 Identities = 316/357 (88%), Gaps = 6/357 (1%)
 Strand = Plus / Minus

                                                                       
Query: 104 aatttgtggcaacaatagtgcaccctatattgccacacagtacttctcactgcaatattt 163
           ||||||||||  | ||||| ||| |||||||||||||||  ||||||| | | |||||||
Sbjct: 793 aatttgtggcgcctatagtacactctatattgccacacaacacttctctcggtaatattt 734

                                                                       
Query: 164 ccatgcatgtagcacatcagtattttgtttctgctgcgggcaacctgcacgtcatattgc 223
           |||||||||||  ||| || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 733 ccatgcatgtactacagcaatattttgtttctgctgcagt-aacctgcatgtcatattgc 675

                                                                       
Query: 224 aaggctagagaattattaaggactggtgctaaaagtaagcgaagggaga-ccgtacgtgg 282
           ||| |||||||||||||||| ||| || ||||||||||| ||||||| | ||||||||||
Sbjct: 674 aag-ctagagaattattaagtactagtactaaaagtaagtgaagggaaaaccgtacgtgg 616

                                                                       
Query: 283 caacgaaagtgccacggattattcgtcgttgcaataatactgccattagcaagatcatca 342
           ||| | || ||||||||||||| ||||||||||||| |||   |||||||||||||||||
Sbjct: 615 caatggaactgccacggattatgcgtcgttgcaatactac---cattagcaagatcatca 559

                                                                       
Query: 343 ttctgcgacaagagtggagttggcggcgatggcctcggcgaggacaccgtcgcagccgcc 402
           |||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 558 ttctgcgagaagagtggagttggtggcgatggcctcggcgaagacaccatcgcagccgcc 499

                                                                    
Query: 403 gctctggcaacctgcgccgcagtagcccgggccgatgccacaggatccccacttgct 459
           ||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 498 gctctggcagcctgcaccgcagtagccgggaccgatgccacaggatccccacttgct 442



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagactaatggcaatatattgcaacgaaatcatggagtactccaacattacaacggggat 60
           |||||| |||| ||||||||||||||| |||| | ||||||||||||||||||| | |||
Sbjct: 893 gagactcatggtaatatattgcaacgatatcacgaagtactccaacattacaacagcgat 834

                    
Query: 61  gcatgcatc 69
           |||||||||
Sbjct: 833 gcatgcatc 825
to top
>ref|XM_474630.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 654

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 561 gcagccgccgctctggcagccggagccgcagtag 528
to top
>emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015C06,
             complete sequence
          Length = 147676

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 394   gcagccgccgctctggcaacctgcgccgcagtag 427
             |||||||||||||||||| || | ||||||||||
Sbjct: 82534 gcagccgccgctctggcagccggagccgcagtag 82567
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 394     gcagccgccgctctggcaacctgcgccgcagtag 427
               |||||||||||||||||| || | ||||||||||
Sbjct: 4970127 gcagccgccgctctggcagccggagccgcagtag 4970160
to top
>dbj|AK103206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122E14, full
           insert sequence
          Length = 1097

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 662 gcagccgccgctctggcagccggagccgcagtag 629
to top
>gb|AF140682.1|AF140682 Oryza sativa subsp. japonica cultivar EY105 lectin gene, partial
           cds
          Length = 668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 512 gcagccgccgctctggcagccggagccgcagtag 479
to top
>gb|AF140681.1|AF140681 Oryza sativa subsp. indica lectin gene, partial cds
          Length = 668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 512 gcagccgccgctctggcagccggagccgcagtag 479
to top
>gb|AF140680.1|AF140680 Oryza rufipogon lectin gene, partial cds
          Length = 668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 512 gcagccgccgctctggcagccggagccgcagtag 479
to top
>gb|AF140679.1|AF140679 Oryza sativa subsp. japonica cultivar javanica lectin gene, partial
           cds
          Length = 668

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 512 gcagccgccgctctggcagccggagccgcagtag 479
to top
>gb|M24504.1|RICLECTIN Oryza sativa lectin mRNA, complete cds
          Length = 1035

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 394 gcagccgccgctctggcaacctgcgccgcagtag 427
           |||||||||||||||||| || | ||||||||||
Sbjct: 648 gcagccgccgctctggcagccggagccgcagtag 615
to top
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 225    aggctagagaattattaagga 245
              |||||||||||||||||||||
Sbjct: 626143 aggctagagaattattaagga 626163
to top
>gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosome 15, complete sequence
          Length = 156807

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 149    ctcactgcaatatttccatgcatgt 173
              ||||||||||||||| |||||||||
Sbjct: 109454 ctcactgcaatattttcatgcatgt 109430
to top
>gb|AC084706.11| Homo sapiens chromosome , clone RP11-91P17, complete sequence
          Length = 146810

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   atttccatgcatgtagcacat 180
             |||||||||||||||||||||
Sbjct: 87713 atttccatgcatgtagcacat 87693
to top
>gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, complete sequence
          Length = 179163

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 324   gccattagcaagatcatcattctgc 348
             |||||||||||||||| ||||||||
Sbjct: 94430 gccattagcaagatcagcattctgc 94454
to top
>gb|AC131405.5| Rattus norvegicus  BAC CH230-179I7 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 217197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   attgccacacagtacttctca 152
             |||||||||||||||||||||
Sbjct: 23503 attgccacacagtacttctca 23483
to top
>emb|AJ329217.1|HSA329217 Homo sapiens genomic sequence surrounding NotI site, clone NR1-153R
          Length = 1225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 373 ggcctcggcgaggacaccgtc 393
           |||||||||||||||||||||
Sbjct: 545 ggcctcggcgaggacaccgtc 565
to top
>dbj|AP004929.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT06J16, TM0083,
             complete sequence
          Length = 120016

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   ggctagagaattattaaggac 246
             |||||||||||||||||||||
Sbjct: 25630 ggctagagaattattaaggac 25610
to top
>gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152832

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    tgcaatatttccatgcatgta 174
              |||||||||||||||||||||
Sbjct: 130179 tgcaatatttccatgcatgta 130199
to top
>ref|XM_469829.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 358 ggagttggcggcgatggcctcggcgagg 385
           |||||||  |||||||||||||||||||
Sbjct: 684 ggagttgcaggcgatggcctcggcgagg 657
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 363     tggcggcgatggcctcggcg 382
               ||||||||||||||||||||
Sbjct: 2823633 tggcggcgatggcctcggcg 2823614
to top
>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aatatttccatgcatgtagc 176
             ||||||||||||||||||||
Sbjct: 67967 aatatttccatgcatgtagc 67986
to top
>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aatatttccatgcatgtagc 176
             ||||||||||||||||||||
Sbjct: 61232 aatatttccatgcatgtagc 61251
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 358      ggagttggcggcgatggcctcggcgagg 385
                |||||||  |||||||||||||||||||
Sbjct: 30988875 ggagttgcaggcgatggcctcggcgagg 30988902
to top
>ref|XM_001004096.1| PREDICTED: Mus musculus chromatin modifying protein 6, transcript
           variant 4 (Chmp6), mRNA
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 ccgtcgcagccgccgctctg 408
           ||||||||||||||||||||
Sbjct: 39  ccgtcgcagccgccgctctg 20
to top
>ref|XM_917071.2| PREDICTED: Mus musculus chromatin modifying protein 6, transcript
           variant 7 (Chmp6), mRNA
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 ccgtcgcagccgccgctctg 408
           ||||||||||||||||||||
Sbjct: 39  ccgtcgcagccgccgctctg 20
to top
>ref|XM_126613.6| PREDICTED: Mus musculus chromatin modifying protein 6, transcript
           variant 1 (Chmp6), mRNA
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 ccgtcgcagccgccgctctg 408
           ||||||||||||||||||||
Sbjct: 39  ccgtcgcagccgccgctctg 20
to top
>gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome 19, complete sequence
          Length = 205768

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    tgcatgcatcctgacaactg 79
             ||||||||||||||||||||
Sbjct: 83407 tgcatgcatcctgacaactg 83388
to top
>emb|CR718767.2|CNS0GHJP Tetraodon nigroviridis full-length cDNA
          Length = 870

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 tgcaatatttccatgcatgt 173
           ||||||||||||||||||||
Sbjct: 397 tgcaatatttccatgcatgt 378
to top
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
              genomic sequence, complete sequence
          Length = 168759

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 358    ggagttggcggcgatggcctcggcgagg 385
              |||||||  |||||||||||||||||||
Sbjct: 107189 ggagttgcaggcgatggcctcggcgagg 107162
to top
>gb|AC113603.6| Homo sapiens chromosome 8, clone RP11-101N9, complete sequence
          Length = 161374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   atattgcaaggctagagaat 236
             ||||||||||||||||||||
Sbjct: 16480 atattgcaaggctagagaat 16461
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 358     ggagttggcggcgatggcctcggc 381
               |||||||||||||||| |||||||
Sbjct: 1855050 ggagttggcggcgatgacctcggc 1855073
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 363     tggcggcgatggcctcggcg 382
               ||||||||||||||||||||
Sbjct: 4381483 tggcggcgatggcctcggcg 4381464
to top
>gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, complete sequence
          Length = 162485

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ctaatggcaatatattgcaa 24
              ||||||||||||||||||||
Sbjct: 144240 ctaatggcaatatattgcaa 144259
to top
>gb|AC012339.8| Homo sapiens chromosome 8, clone RP11-31K23, complete sequence
          Length = 179818

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   atattgcaaggctagagaat 236
             ||||||||||||||||||||
Sbjct: 47660 atattgcaaggctagagaat 47679
to top
>gb|AC068102.5| Homo sapiens chromosome 8, clone RP11-333M8, complete sequence
          Length = 174742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   atattgcaaggctagagaat 236
             ||||||||||||||||||||
Sbjct: 16480 atattgcaaggctagagaat 16461
to top
>gb|AC010482.8| Homo sapiens chromosome 5 clone CTD-2318J2, complete sequence
          Length = 203278

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      ctaatggcaatatattgcaa 24
              ||||||||||||||||||||
Sbjct: 200684 ctaatggcaatatattgcaa 200665
to top
>gb|AC159254.2| Mus musculus BAC clone RP24-112C23 from chromosome 12, complete sequence
          Length = 163438

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    cttctcactgcaatatttcc 165
              ||||||||||||||||||||
Sbjct: 145240 cttctcactgcaatatttcc 145259
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 358      ggagttggcggcgatggcctcggcgagg 385
                |||||||  |||||||||||||||||||
Sbjct: 31079398 ggagttgcaggcgatggcctcggcgagg 31079425
to top
>gb|AC102861.12| Mus musculus chromosome 7, clone RP24-532A16, complete sequence
          Length = 162039

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tattgcaaggctagagaatt 237
             ||||||||||||||||||||
Sbjct: 95532 tattgcaaggctagagaatt 95551
to top
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aatatttccatgcatgtagc 176
             ||||||||||||||||||||
Sbjct: 69133 aatatttccatgcatgtagc 69152
to top
>emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chromosome 11, complete
             sequence
          Length = 168500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   ccgtcgcagccgccgctctg 408
             ||||||||||||||||||||
Sbjct: 88697 ccgtcgcagccgccgctctg 88678


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,358,459
Number of Sequences: 3902068
Number of extensions: 3358459
Number of successful extensions: 60877
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60525
Number of HSP's gapped (non-prelim): 339
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top