Clone Name | rbart24g03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full insert mRNA sequence Length = 588 Score = 345 bits (174), Expect = 8e-92 Identities = 299/340 (87%), Gaps = 3/340 (0%) Strand = Plus / Minus Query: 141 gggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcactgccgcg 200 ||||||||||||||||||||||||||||| | ||||||||||| |||||||| | |||| Sbjct: 387 gggatgctctgctcgtttctgaagtagtccattggatccacggctgccttcaccgacgcg 328 Query: 201 agcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaacgtg 260 ||||||||| |||||||| ||||||| ||||||||||||||||| |||| | | ||||| Sbjct: 327 agcctctggtagttgctcatgaagtagcgctcaccccaaaccttgccgctctgggacgtg 268 Query: 261 gt---ggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 || | ||||||| |||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 267 gtactgaggtcgtccgacaccgcgttctggccgatgtccaggtcccggaagttgacgtac 208 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaagtcgtacaagttgccgagccag 377 |||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||| Sbjct: 207 gcctgcctcgggttgctgctcacgtagtgccccatgaagtcgtagaagctgccgagccag 148 Query: 378 gtgttcgccgccgtgcccccgtcaccctgccagaacaccatgtactggacgttgtacagc 437 ||| | ||||||||||| ||||| || ||||||||| | |||||||||| | |||| ||| Sbjct: 147 gtggtggccgccgtgccgccgtcgccttgccagaacgcgatgtactggatgatgtagagc 88 Query: 438 acgccgctccggtgagggtacggcgtcgcgtcggtgggga 477 |||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 87 acgccgctccggtgcgggtacggcgttgcggcggtgggga 48
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 200 bits (101), Expect = 3e-48 Identities = 288/349 (82%), Gaps = 6/349 (1%) Strand = Plus / Plus Query: 135 aatggcgggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcact 194 ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 20436760 aatggcgggatgctctgctcgttcctgaagtagtcggtcggatccatcgccgccttcacc 20436819 Query: 195 gccgcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcg 254 || |||||||||| |||||||| | |||||||| ||| ||||| |||||| |||| ||| Sbjct: 20436820 gcggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccgctctcg 20436879 Query: 255 aacgtggtggcgtcgt---ccaccaccacgttctggccgatgtccaggtcccggtagttg 311 |||||| | |||||| | ||||| |||||| ||||||||||||||||||| |||| Sbjct: 20436880 aacgtgctcacgtcgttcggcgccaccgcgttctcgccgatgtccaggtcccggaagttc 20436939 Query: 312 acgtacgcctgcctcgggttcttgctcacgtactgccccatgaagtcgtacaagttgccg 371 |||||||||| |||||||| |||| |||||| || ||||||| |||||| | | | Sbjct: 20436940 acgtacgcctccctcgggtcgctgctgacgtacggctccatgaacgcgtacaggccactg 20436999 Query: 372 agccaggtgttcgccgccgtgcccccgtcaccctgccagaacaccatgtactggacgttg 431 | ||| ||||||||||||| ||||| || |||| || | |||||||||| |||| Sbjct: 20437000 atccacctgttcgccgccgt---tccgtcgccggaccagtacgcgatgtactggatgttg 20437056 Query: 432 tacagcacgccgctccggtgagggtacggcgtcgcgtcggtggggacgc 480 ||||| |||||||||||||| |||||||||||||| ||| |||||||| Sbjct: 20437057 tacaggacgccgctccggtgcgggtacggcgtcgccgcggcggggacgc 20437105 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 276 accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 335 |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| |||| Sbjct: 20485187 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 20485246 Query: 336 ctcacgtactgccccatgaa 355 |||||| || || ||||||| Sbjct: 20485247 ctcacgaacggcgccatgaa 20485266 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 287 gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 346 ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| | Sbjct: 20420425 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 20420484 Query: 347 ccccatgaa 355 | ||||||| Sbjct: 20420485 ctccatgaa 20420493 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 134 caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 |||||| || |||||||||||||| |||||| |||||||||||||||| Sbjct: 20420266 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 20420313 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 137 tggcgggatgctctgctcgtttctgaagtagtcg 170 ||||||||||||||||||||| |||||||||||| Sbjct: 20485045 tggcgggatgctctgctcgttcctgaagtagtcg 20485078 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 416 catgtactggacgttgtacagcacgccgctccggtgagggtacggcgtcgc 466 ||||||||||| |||||| |||||||||| ||||| ||| |||||||||| Sbjct: 20485339 catgtactggatgttgtagagcacgccgccgcggtgcgggaacggcgtcgc 20485389 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 297 aggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgta 343 ||||||| ||||||| | ||||||| ||| ||||||||||||||||| Sbjct: 20464873 aggtccctgtagttggcatacgcctccctggggttcttgctcacgta 20464919 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 138 ggcgggatgctctgctcgtttctgaagtagtcg 170 |||||||||||||||||||| | |||||||||| Sbjct: 20460574 ggcgggatgctctgctcgttccggaagtagtcg 20460606 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Plus Query: 406 gccagaacaccatgtactggacgttgtacagcacgccgctccggtgagggtacggcgt 463 |||||||| | | |||||||| |||||| || |||||| |||||| ||||||||||| Sbjct: 20460848 gccagaacgcgacgtactggatgttgtagaggacgccggaccggtgcgggtacggcgt 20460905
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 200 bits (101), Expect = 3e-48 Identities = 288/349 (82%), Gaps = 6/349 (1%) Strand = Plus / Plus Query: 135 aatggcgggatgctctgctcgtttctgaagtagtcggtgggatccacggccgccttcact 194 ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 9055 aatggcgggatgctctgctcgttcctgaagtagtcggtcggatccatcgccgccttcacc 9114 Query: 195 gccgcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcg 254 || |||||||||| |||||||| | |||||||| ||| ||||| |||||| |||| ||| Sbjct: 9115 gcggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccgctctcg 9174 Query: 255 aacgtggtggcgtcgt---ccaccaccacgttctggccgatgtccaggtcccggtagttg 311 |||||| | |||||| | ||||| |||||| ||||||||||||||||||| |||| Sbjct: 9175 aacgtgctcacgtcgttcggcgccaccgcgttctcgccgatgtccaggtcccggaagttc 9234 Query: 312 acgtacgcctgcctcgggttcttgctcacgtactgccccatgaagtcgtacaagttgccg 371 |||||||||| |||||||| |||| |||||| || ||||||| |||||| | | | Sbjct: 9235 acgtacgcctccctcgggtcgctgctgacgtacggctccatgaacgcgtacaggccactg 9294 Query: 372 agccaggtgttcgccgccgtgcccccgtcaccctgccagaacaccatgtactggacgttg 431 | ||| ||||||||||||| ||||| || |||| || | |||||||||| |||| Sbjct: 9295 atccacctgttcgccgccgt---tccgtcgccggaccagtacgcgatgtactggatgttg 9351 Query: 432 tacagcacgccgctccggtgagggtacggcgtcgcgtcggtggggacgc 480 ||||| |||||||||||||| |||||||||||||| ||| |||||||| Sbjct: 9352 tacaggacgccgctccggtgcgggtacggcgtcgccgcggcggggacgc 9400 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 276 accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 335 |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| |||| Sbjct: 57482 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 57541 Query: 336 ctcacgtactgccccatgaa 355 |||||| || || ||||||| Sbjct: 57542 ctcacgaacggcgccatgaa 57561 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 137 tggcgggatgctctgctcgtttctgaagtagtcg 170 ||||||||||||||||||||| |||||||||||| Sbjct: 57340 tggcgggatgctctgctcgttcctgaagtagtcg 57373 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 416 catgtactggacgttgtacagcacgccgctccggtgagggtacggcgtcgc 466 ||||||||||| |||||| |||||||||| ||||| ||| |||||||||| Sbjct: 57634 catgtactggatgttgtagagcacgccgccgcggtgcgggaacggcgtcgc 57684 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 297 aggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgta 343 ||||||| ||||||| | ||||||| ||| ||||||||||||||||| Sbjct: 37168 aggtccctgtagttggcatacgcctccctggggttcttgctcacgta 37214 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 138 ggcgggatgctctgctcgtttctgaagtagtcg 170 |||||||||||||||||||| | |||||||||| Sbjct: 32869 ggcgggatgctctgctcgttccggaagtagtcg 32901 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Plus Query: 406 gccagaacaccatgtactggacgttgtacagcacgccgctccggtgagggtacggcgt 463 |||||||| | | |||||||| |||||| || |||||| |||||| ||||||||||| Sbjct: 33143 gccagaacgcgacgtactggatgttgtagaggacgccggaccggtgcgggtacggcgt 33200
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 99.6 bits (50), Expect = 8e-18 Identities = 131/158 (82%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||| |||||||||||| ||||||||| ||| ||||| |||||| ||||| | | Sbjct: 1478 gcgagcctttggaagttgctcttgaagtacttctcgccccacaccttgccgctgctgtag 1419 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 || | | ||||| ||||||| | ||| ||||| ||| | ||||| ||||||| ||||| Sbjct: 1418 gttgagatgtcgttcaccacctcattcctgccgaggtcgatgtccctgtagttggcgtac 1359 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaa 355 |||||||| |||||||||||||||||| || ||||||| Sbjct: 1358 gcctgcctggggttcttgctcacgtacggctccatgaa 1321 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtc 169 ||||||||||| ||||| || ||||||||||| Sbjct: 1538 ggcgggatgctttgctcattcctgaagtagtc 1507
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 99.6 bits (50), Expect = 8e-18 Identities = 131/158 (82%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||| |||||||||| | ||||||||| ||| |||||||||||| ||||| | Sbjct: 1478 gcgagcctttggaagttgcccttgaagtacttctcgccccaaaccttgccgctgctatag 1419 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 || | | ||||| ||||||| ||||| ||||| ||| | ||||| ||||||| ||||| Sbjct: 1418 gttgagatgtcgttcaccacctcgttcctgccgaggtcaatgtccctgtagttggcgtac 1359 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaa 355 |||||||| |||||||||||||||||| || ||||||| Sbjct: 1358 gcctgcctggggttcttgctcacgtacggctccatgaa 1321 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtc 169 |||||||||||||||||||| ||||||||||| Sbjct: 1538 ggcgggatgctctgctcgttcctgaagtagtc 1507
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||| |||||||||| | ||||||||| ||| ||||| |||||| ||||| | | Sbjct: 1481 gcgagcctttggaagttgcccttgaagtacttctcgccccacaccttgccgctgctgtag 1422 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 || | | ||||| ||||||| ||||| ||||| ||| | ||||| ||||||| ||||| Sbjct: 1421 gttgagatgtcgttcaccacctcgttcctgccgaggtcgatgtccctgtagttggcgtac 1362 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaa 355 |||||||| ||||||||||||||| || || ||||||| Sbjct: 1361 gcctgcctggggttcttgctcacgaacggctccatgaa 1324 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtc 169 |||||||||||||||||||| ||||||||||| Sbjct: 1541 ggcgggatgctctgctcgttcctgaagtagtc 1510
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 276 accacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttg 335 |||||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| |||| Sbjct: 1485 accacgttctcgccgaggtccaggtccctgtagttggcgtacgcctccctcgggtccttg 1426 Query: 336 ctcacgtactgccccatgaa 355 |||||| || || ||||||| Sbjct: 1425 ctcacgaacggcgccatgaa 1406 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 137 tggcgggatgctctgctcgtttctgaagtagtcg 170 ||||||||||||||||||||| |||||||||||| Sbjct: 1627 tggcgggatgctctgctcgttcctgaagtagtcg 1594 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 416 catgtactggacgttgtacagcacgccgctccggtgagggtacggcgtcgc 466 ||||||||||| |||||| |||||||||| ||||| ||| |||||||||| Sbjct: 1333 catgtactggatgttgtagagcacgccgccgcggtgcgggaacggcgtcgc 1283
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 83.8 bits (42), Expect = 5e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||||| |||||||| | ||||||| | || ||||| |||||| ||||| || | Sbjct: 1448 gcgagcctctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtag 1389 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 |||| | |||||| |||||| ||||| ||||| ||| | ||||| |||||| ||||| Sbjct: 1388 gtggagacgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtac 1329 Query: 318 gcctgcctcgggttcttgctcacgta 343 |||||||| ||||||||||||||||| Sbjct: 1328 gcctgcctggggttcttgctcacgta 1303 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtcggtgggatc 178 |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtaggatc 1468
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 83.8 bits (42), Expect = 5e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||||| |||||||| | ||||||| | || ||||| |||||| ||||| || | Sbjct: 1534 gcgagcctctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtag 1475 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 |||| | |||||| |||||| ||||| ||||| ||| | ||||| |||||| ||||| Sbjct: 1474 gtggagacgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtac 1415 Query: 318 gcctgcctcgggttcttgctcacgta 343 |||||||| ||||||||||||||||| Sbjct: 1414 gcctgcctggggttcttgctcacgta 1389 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtcggtgggatc 178 |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1594 ggcgggatgctctgctcgttcctgaagtagtcggtaggatc 1554
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 287 gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 346 ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| | Sbjct: 143820 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 143879 Query: 347 ccccatgaa 355 | ||||||| Sbjct: 143880 ctccatgaa 143888 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 134 caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 |||||| || |||||||||||||| |||||| |||||||||||||||| Sbjct: 143661 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 143708
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 287 gccgatgtccaggtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactg 346 ||||| ||| ||||||| ||||||||||||||||||||||||||||||| | |||||| | Sbjct: 1441 gccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacgg 1382 Query: 347 ccccatgaa 355 | ||||||| Sbjct: 1381 ctccatgaa 1373 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 134 caatggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 |||||| || |||||||||||||| |||||| |||||||||||||||| Sbjct: 1600 caatggaggaatgctctgctcgttcctgaagaagtcggtgggatccac 1553
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 79.8 bits (40), Expect = 8e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtgggatccac 1465 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 265 cgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtacgcctgcc 324 |||||| ||||||| ||||| |||| ||| | ||||| ||||||| |||| ||||||| Sbjct: 1381 cgtcgttcaccacctcgttcctcccgaggtcgatgtccctgtagttggcgtaggcctgcc 1322 Query: 325 tcgggttcttgctcacgta 343 | ||||||||||||||||| Sbjct: 1321 tggggttcttgctcacgta 1303
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||| |||||||||| | ||||||||| ||| ||||| |||||| ||||| | | Sbjct: 1487 gcgagcctttggaagttgcccttgaagtacttctcgccccagaccttgccgctggcatag 1428 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 |||| | ||||| |||||| ||||| ||||| ||| | ||||| ||||||| |||| Sbjct: 1427 gtggagatgtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagttggcgtag 1368 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaa 355 ||||| || ||||||||||| |||||| || ||||||| Sbjct: 1367 gcctgtctggggttcttgctgacgtacggctccatgaa 1330 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtc 169 |||||||||||||||||||| ||||||||||| Sbjct: 1547 ggcgggatgctctgctcgttcctgaagtagtc 1516
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 71.9 bits (36), Expect = 2e-09 Identities = 132/164 (80%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||||| |||||||| | ||||||||| ||| ||||| |||||| ||||| || | Sbjct: 1499 gcgagcctctcgaagttgcccttgaagtacttctctccccataccttgccgctggcgtag 1440 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 |||| | ||| | |||||| ||| ||| | ||| ||||| | ||||||||||||| Sbjct: 1439 gtggagacgttaccgaccacctggttgacgccaaggtcgaggtctctgtagttgacgtac 1380 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaagtcgta 361 |||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 1379 gcctgcctggggttcttgctgacgtagggcgtcatgaagtcgta 1336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 134 caatggcgggatgctctgctcgtttctgaagtagtc 169 ||||||||||||||||||||| || ||||||||||| Sbjct: 1563 caatggcgggatgctctgctcattcctgaagtagtc 1528
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 67.9 bits (34), Expect = 3e-08 Identities = 127/158 (80%) Strand = Plus / Minus Query: 198 gcgagcctctggaagttgctcgtgaagtactgctcaccccaaaccttggcgctgtcgaac 257 |||||||| |||||||||| | ||||||||| ||||||||| || ||| ||||| | | Sbjct: 1478 gcgagcctttggaagttgcccttgaagtacttctcaccccacactttgccgctgctgtag 1419 Query: 258 gtggtggcgtcgtccaccaccacgttctggccgatgtccaggtcccggtagttgacgtac 317 |||| | ||||| ||||||| | ||| ||| | ||| | ||||| ||||||| | ||| Sbjct: 1418 gtggagatgtcgttcaccacctcattcctgccaaggtcgatgtccctgtagttggcatac 1359 Query: 318 gcctgcctcgggttcttgctcacgtactgccccatgaa 355 |||||||| || || |||||||||||| || ||||||| Sbjct: 1358 gcctgcctgggatttttgctcacgtacggctccatgaa 1321 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 131 gaccaatggcgggatgctctgctcgtttctgaagtagtc 169 ||||| ||||||||||||||||||||| ||||||||||| Sbjct: 1545 gaccagtggcgggatgctctgctcgttcctgaagtagtc 1507
>gb|AY105422.1| Zea mays PCO091928 mRNA sequence Length = 664 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 134 caatggcgggatgctctgctcgtttctgaagtagtcg 170 |||||||||||||||||||||||| |||||||||||| Sbjct: 145 caatggcgggatgctctgctcgttcctgaagtagtcg 109
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 135 aatggcgggatgctctgctcgtttctgaagtagtcg 170 ||||||||||||||||||||||| |||||||||||| Sbjct: 1592 aatggcgggatgctctgctcgttcctgaagtagtcg 1557 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 279 acgttctggccgatgtccaggtcccggtagttgacgtacgcctgcctcgggtt 331 ||||||| ||||| ||||||||||| |||||||| ||| |||| ||||||||| Sbjct: 1448 acgttctcgccgaggtccaggtccctgtagttgaagtaggcctccctcgggtt 1396 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 416 catgtactggacgttgtacagcacgccgctccggtgagggtacggcgtcgc 466 ||||||||||| |||||| ||||||||| ||||| |||||||||||||| Sbjct: 1305 catgtactggatgttgtagagcacgccggcgcggtgcgggtacggcgtcgc 1255 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 197 cgcgagcctctggaagttgctcgtgaagtact 228 ||||||||||||| |||||| | ||||||||| Sbjct: 1530 cgcgagcctctggtagttgcccttgaagtact 1499
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 299 gtcccggtagttgacgtacgcctgcctcgggttcttgctcacgtactgccccatg 353 ||||| ||||||| |||| |||||||| |||||||||||||||||| || ||||| Sbjct: 1123 gtccctgtagttggcgtaggcctgcctggggttcttgctcacgtacggctccatg 1069
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 137 tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 ||||||||||||||||||||| | |||||||||| ||||||||| Sbjct: 73145 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 73189 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 gtactggacgttgtacagcacgccg 443 |||||||| |||||||||||||||| Sbjct: 73439 gtactggatgttgtacagcacgccg 73463
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 137 tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 ||||||||||||||||||||| | |||||||||| ||||||||| Sbjct: 17005538 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 17005582 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 gtactggacgttgtacagcacgccg 443 |||||||| |||||||||||||||| Sbjct: 17005832 gtactggatgttgtacagcacgccg 17005856
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 137 tggcgggatgctctgctcgtttctgaagtagtcggtgggatccac 181 ||||||||||||||||||||| | |||||||||| ||||||||| Sbjct: 17100190 tggcgggatgctctgctcgttgcggaagtagtcgccgggatccac 17100234 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 gtactggacgttgtacagcacgccg 443 |||||||| |||||||||||||||| Sbjct: 17100484 gtactggatgttgtacagcacgccg 17100508
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 138 ggcgggatgctctgctcgtttctgaagtagtcg 170 |||||||||||||||||||| | |||||||||| Sbjct: 1613 ggcgggatgctctgctcgttccggaagtagtcg 1581 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 406 gccagaacaccatgtactggacgttgtacagcacgccgctccggtgagggtacggcgt 463 |||||||| | | |||||||| |||||| || |||||| |||||| ||||||||||| Sbjct: 1339 gccagaacgcgacgtactggatgttgtagaggacgccggaccggtgcgggtacggcgt 1282
>emb|X78330.1|HVB191 H.vulgare (cv Bomi) B191 gene intron Length = 119 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 88 gcatacaaatacagtagtacaac 110 ||||||||||||||||||||||| Sbjct: 102 gcatacaaatacagtagtacaac 80
>gb|AC020728.4|AC020728 Homo sapiens BAC clone RP11-506H20 from 5, complete sequence Length = 201404 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 caggtgttcgccgccgtgccc 395 ||||||||||||||||||||| Sbjct: 159148 caggtgttcgccgccgtgccc 159168
>gb|AC168055.3| Mus musculus BAC clone RP24-360I1 from chromosome 10, complete sequence Length = 206775 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaagcacaaattgccttggt 20 |||||||||||||||||||| Sbjct: 6658 gaagcacaaattgccttggt 6639
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ccaccacgttctggccgatg 293 |||||||||||||||||||| Sbjct: 55041 ccaccacgttctggccgatg 55022
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ggtgagggtacggcgtcgcg 467 |||||||||||||||||||| Sbjct: 548473 ggtgagggtacggcgtcgcg 548454
>gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, complete sequence Length = 201670 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaagcacaaattgccttggt 20 |||||||||||||||||||| Sbjct: 165935 gaagcacaaattgccttggt 165916
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cgccttcactgccgcgagcc 204 |||||||||||||||||||| Sbjct: 1448601 cgccttcactgccgcgagcc 1448582
>gb|AC073156.19| Homo sapiens 3 BAC RP11-223L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131142 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcctacttccgttttcacaa 43 |||||||||||||||||||| Sbjct: 60321 tcctacttccgttttcacaa 60302
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gtcgcgtcggtggggacgct 481 |||||||||||||||||||| Sbjct: 4843092 gtcgcgtcggtggggacgct 4843073
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gttcgccgccgtgcccccgtcacc 403 ||||||||||||| |||||||||| Sbjct: 1572179 gttcgccgccgtgtccccgtcacc 1572156
>gb|AE004993.1| Halobacterium sp. NRC-1 section 24 of 170 of the complete genome Length = 10286 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cgtcgtccaccaccacgttc 284 |||||||||||||||||||| Sbjct: 8155 cgtcgtccaccaccacgttc 8174
>gb|BC098940.1| Rattus norvegicus ATPase, class I, type 8B, member 4, mRNA (cDNA clone IMAGE:7455768), complete cds Length = 1618 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgctcacttacgtccttgga 132 |||||||||||||||||||| Sbjct: 196 tgctcacttacgtccttgga 177
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gcgtcgtccaccaccacgtt 283 |||||||||||||||||||| Sbjct: 2751445 gcgtcgtccaccaccacgtt 2751426 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,817,988 Number of Sequences: 3902068 Number of extensions: 2817988 Number of successful extensions: 47122 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46706 Number of HSP's gapped (non-prelim): 416 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)