ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart24f11 |
|---|---|
| Clone Library Name | barley_pub |
>RPB3A_ARATH (Q39211) DNA-directed RNA polymerase II 36 kDa polypeptide A (EC| 2.7.7.6) (RNA polymerase II subunit 3) Length = 319 Score = 85.9 bits (211), Expect = 4e-17 Identities = 40/55 (72%), Positives = 51/55 (92%) Frame = -2 Query: 444 EVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVR 280 EVIKKAEAMGKPGL+EI+ K+DSF+FTVE+TGA+ A +L++NAI +L+QKLDAVR Sbjct: 243 EVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVR 297
>RPB3B_ARATH (Q39212) DNA-directed RNA polymerase II 36 kDa polypeptide B (EC| 2.7.7.6) (RNA polymerase II subunit 3) Length = 319 Score = 85.5 bits (210), Expect = 5e-17 Identities = 40/55 (72%), Positives = 50/55 (90%) Frame = -2 Query: 444 EVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVR 280 EVIKKAEAMGKPGL+EI+ K DSFVFTVE+TGA+ A +L++NAI +L+QKLDA+R Sbjct: 243 EVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIR 297
>CNJC_TETTH (P16925) Conjugation stage-specific protein| Length = 310 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/54 (46%), Positives = 34/54 (62%) Frame = -2 Query: 441 VIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVR 280 V K AE KP L++I+ K+D F F VETTG + E++ + LRQKLD +R Sbjct: 241 VYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294
>RPOD_METKA (Q8TVB8) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 275 Score = 36.2 bits (82), Expect = 0.037 Identities = 14/43 (32%), Positives = 28/43 (65%) Frame = -2 Query: 408 GLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVR 280 G V + ++D+FVF VET G+++ I+ A+ + KL++++ Sbjct: 223 GAVRVRLRDDAFVFNVETDGSMSLDTAILKALDAIEHKLESLK 265
>RPOD_HALMA (Q00813) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 295 VE++ ++FVF VET G+ T EL++ A+ LR + Sbjct: 214 VEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDR 249
>RPOD_METTH (O26144) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 264 Score = 32.7 bits (73), Expect = 0.41 Identities = 11/40 (27%), Positives = 25/40 (62%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAV 283 +++ +E F+F +ET G++ ++++ A +LR K + V Sbjct: 218 IDVGYEEGKFIFRIETDGSVDPKDVLLKACDILRDKAEQV 257
>RPOD_PYRKO (Q5JJF4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 32.3 bits (72), Expect = 0.53 Identities = 21/49 (42%), Positives = 27/49 (55%) Frame = -2 Query: 435 KKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 289 K E MGK EI SFVFTVET G + E++ A+ +L +K D Sbjct: 202 KFEEHMGKGIREEI--VPGSFVFTVETNGELPVEEIVSIALKILMRKSD 248
>RPOD_ARCFU (O28002) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 264 Score = 32.0 bits (71), Expect = 0.70 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 4/41 (9%) Frame = -2 Query: 399 EINA----KEDSFVFTVETTGAITAYELIMNAITVLRQKLD 289 E+NA + ++F+FTVE TGA+ E++ A+ +LR K + Sbjct: 214 EMNAISVNETNNFLFTVEGTGALPVREVMKKALEILRSKAE 254
>RPOA_MANSM (Q65QY0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET GAI E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLVIELETNGAIDPEEAIRRAATILAEQLDA 230
>RPOA_HAEIN (P43737) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET GA+ E I A T+L ++LDA Sbjct: 191 VEQRTDLDKLVIELETNGALEPEEAIRRAATILAEQLDA 229
>RPOA_HAEI8 (Q4QM97) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET GA+ E I A T+L ++LDA Sbjct: 191 VEQRTDLDKLVIELETNGALEPEEAIRRAATILAEQLDA 229
>AMY_BUTFI (P30269) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 976 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -2 Query: 417 GKPGLVEINAKEDSFVFTVETTGAITAYELIMN 319 G PG V +N + V+TTG ITA+ LI N Sbjct: 734 GWPGTVAVNEGSGWYRADVKTTGEITAFNLIFN 766
>RPOD_HALSA (Q9HQJ4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 248 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 289 VEI + +FVF VE+ G++ EL++ A+ L + D Sbjct: 203 VEIEDVDGAFVFHVESDGSMPVEELVLRAVDTLVDRAD 240
>RPOA_PASMU (P57941) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G I E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLVIELETNGTIDPEEAIRRAATILAEQLDA 230
>RPOD_PYRHO (O59303) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 381 DSFVFTVETTGAITAYELIMNAITVLRQKLD 289 D++VF VET G + E++ A+ +L +K D Sbjct: 218 DTYVFVVETNGELPVEEIVKIALRILMRKAD 248
>RPOA_HAEDU (Q7VKF8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D + +ET G I E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLIIDMETNGTIDPEEAIRRAATILAEQLDA 230
>RPOD_PYRFU (Q8U0E4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 261 Score = 29.6 bits (65), Expect = 3.5 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -2 Query: 381 DSFVFTVETTGAITAYELIMNAITVLRQKLD 289 ++++FTVET G + E++ A+ +L +K D Sbjct: 220 NTYIFTVETNGELPVEEIVSIALKILMRKAD 250
>RPOA_SHESP (P74963) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 191 VEQRTNLDKLVIDMETNGTLDPEEAIRRAATILAEQLDA 229
>RPOA_VIBVY (Q7MPG4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>RPOA_VIBVU (Q8DE63) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>RPOA_VIBPA (Q87SZ0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>RPOA_VIBCH (Q9KP08) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>RPOA_VIBF1 (Q5E889) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAEQLDA 230
>RPOA_PHOPR (Q6LV91) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAEQLDA 230
>RPOA_IDILO (Q5QXV8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 191 VEQRTDLDKLVIEMETNGTLDPEEAIRRAATILAEQLDA 229
>RPOA_COLP3 (Q488Y8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D V +ET G + E I A T+L ++LDA Sbjct: 191 VEQRTDLDKLVLDMETNGTLDPEEAIRRASTILAEQLDA 229
>RPOA_HELPY (P56001) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 344 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = -2 Query: 405 LVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKL 292 LVE + + +F +ET G I Y+ ++A+ V+ ++L Sbjct: 194 LVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQL 231
>RPOA_HELPJ (Q9ZJT5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 344 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = -2 Query: 405 LVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKL 292 LVE + + +F +ET G I Y+ ++A+ V+ ++L Sbjct: 194 LVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQL 231
>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)| Length = 5635 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 370 VHCGNNRRHHSLRADYECYHGPEAEAGRRSP 278 VHCG NR ++R Y+C P +R P Sbjct: 5481 VHCGPNRMCFNMRGSYQCIDTPCPPNYQRDP 5511
>PDZK7_HUMAN (Q9H5P4) PDZ domain-containing protein 7| Length = 517 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 125 PSPLATNTLVRRDGPRHGRKKDTAAHFFPK 214 P+ + +T +R DGP GR+ D+A PK Sbjct: 388 PTVILRDTAIRSDGPHPGRRLDSALSESPK 417
>RPOA_PSEHT (Q3IJI6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -2 Query: 402 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 286 VE D + +ET G + E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDA 230
>NPHN_MOUSE (Q9QZS7) Nephrin precursor (Renal glomerulus-specific cell adhesion| receptor) Length = 1242 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +3 Query: 45 PAEVRT*TEGYKDDYRKVLVLDIKGSIHHLLPQTR*LDETGLDTEERKIRLPISFPNKAV 224 P + TE + VLV+ ++ H + + +T+ER I L ++FP AV Sbjct: 284 PVSIAWGTEHAQAVAHSVLVMTVRPEDHGARLSCQSYNSVSAETQERSITLQVTFPPSAV 343 Query: 225 SL 230 ++ Sbjct: 344 TI 345 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,269,248 Number of Sequences: 219361 Number of extensions: 1352243 Number of successful extensions: 3630 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3630 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
