ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart24f10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 69145 aactcaggcctcttccacttgctcttcctcttcctggaggaggttctctctgttgtcgtg 69086 Query: 445 ggcccggaagccg 457 ||||| ||||||| Sbjct: 69085 ggcccagaagccg 69073
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Plus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 76721 aactcaggcctcttccacttgctcttcctcttcctggaggaggttctctctgttgtcgtg 76780 Query: 445 ggcccggaagccg 457 ||||| ||||||| Sbjct: 76781 ggcccagaagccg 76793
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 2790819 aactcaggcctcttccacttgctcttcctcttcctggaggaggttctctctgttgtcgtg 2790760 Query: 445 ggcccggaagccg 457 ||||| ||||||| Sbjct: 2790759 ggcccagaagccg 2790747
>dbj|AK070081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044K03, full insert sequence Length = 2025 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 1582 aactcaggcctcttccacttgctcttcctcttcctggaggaggttctctctgttgtcgtg 1523 Query: 445 ggcccggaagccg 457 ||||| ||||||| Sbjct: 1522 ggcccagaagccg 1510
>dbj|AK058366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F12, full insert sequence Length = 1435 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 1047 aactcaggcctcttccacttgctcttcctcttcctggaggaggttctctctgttgtcgtg 988 Query: 445 ggcccggaagccg 457 ||||| ||||||| Sbjct: 987 ggcccagaagccg 975
>gb|BT016490.1| Zea mays clone Contig323 mRNA sequence Length = 1035 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||| || Sbjct: 381 aactcatgcctcttccacttgctcttcctcttcctggagaaggttctccctgttgtcgtg 440 Query: 445 ggcccggaagcc 456 ||||| |||||| Sbjct: 441 ggcccagaagcc 452
>gb|AY103889.1| Zea mays PCO119117 mRNA sequence Length = 1842 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 385 aactcaagcctcttccacttgctcctcctcttcctggaggaggttctctctgttgtcatg 444 |||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||| || Sbjct: 1436 aactcatgcctcttccacttgctcttcctcttcctggagaaggttctccctgttgtcgtg 1377 Query: 445 ggcccggaagcc 456 ||||| |||||| Sbjct: 1376 ggcccagaagcc 1365
>gb|BT017064.1| Zea mays clone EL01N0358E03.c mRNA sequence Length = 1417 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 385 aactcaagcctcttccacttgctcctcctcttcctgga 422 |||||| |||||||||||||| || ||||||||||||| Sbjct: 1055 aactcatgcctcttccacttggtcttcctcttcctgga 1018
>gb|BT014514.1| Lycopersicon esculentum clone 133901F, mRNA sequence Length = 2053 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Minus Query: 410 tcctcttcctggaggaggttctctctgttgtcatgggccc 449 ||||||||||| || || || ||||||||||||||||||| Sbjct: 1687 tcctcttcctgtagaagattttctctgttgtcatgggccc 1648
>gb|AC182669.2| Populus trichocarpa clone Pop1-21I14, complete sequence Length = 149597 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Minus Query: 410 tcctcttcctggaggaggttctctctgttgtcatgggccc 449 |||||||||||||| || |||||||| || |||||||||| Sbjct: 108786 tcctcttcctggagaagattctctctattatcatgggccc 108747
>gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome 13, complete sequence Length = 157332 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||| |||||||||||||||||| Sbjct: 142128 cctcttcctcttgctcctcctcttcct 142154
>gb|AC154523.2| Mus musculus BAC clone RP24-65H12 from chromosome 13, complete sequence Length = 196410 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Minus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||| |||||||||||||||||| Sbjct: 173751 cctcttcctcttgctcctcctcttcct 173725
>ref|XM_455543.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F10175g predicted mRNA Length = 1731 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Minus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||| |||||||||||||||||| Sbjct: 1372 cctcttcctcttgctcctcctcttcct 1346
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||| |||||||||||||||||| Sbjct: 944860 cctcttcctcttgctcctcctcttcct 944886
>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence Length = 76665 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 395 tcttccacttgctcctcctcttc 417 ||||||||||||||||||||||| Sbjct: 34037 tcttccacttgctcctcctcttc 34059
>gb|AC154406.2| Mus musculus BAC clone RP24-251M20 from 9, complete sequence Length = 169877 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Minus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||||||| |||||||||||||| Sbjct: 115532 cctcttccacttcctcctcctcttcct 115506
>dbj|AP006410.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT29C05, TM0301a, complete sequence Length = 28124 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||||||| |||||||||||||| Sbjct: 23691 cctcttccacttcctcctcctcttcct 23717 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 393 cctcttccacttgctcctcctcttcctg 420 ||||||||| || ||||||||||||||| Sbjct: 23796 cctcttccaattcctcctcctcttcctg 23823
>dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04E21, TM0336, complete sequence Length = 113233 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Minus Query: 393 cctcttccacttgctcctcctcttcct 419 |||||||||||| |||||||||||||| Sbjct: 98775 cctcttccacttcctcctcctcttcct 98749
>gb|AC091660.2| Bos taurus clone RP42-354B6, complete sequence Length = 173068 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 414 cttcctggaggaggttctctct 435 |||||||||||||||||||||| Sbjct: 119086 cttcctggaggaggttctctct 119065
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 725324 tccacttgctcctcctcttcct 725345
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 682290 tccacttgctcctcctcttcct 682311
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 9690570 tccacttgctcctcctcttcct 9690549
>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1015H11 Length = 156897 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 88050 tccacttgctcctcctcttcct 88029
>dbj|AK064275.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F02, full insert sequence Length = 2172 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 1796 tccacttgctcctcctcttcct 1775
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 682290 tccacttgctcctcctcttcct 682311
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 725324 tccacttgctcctcctcttcct 725345
>emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136_E08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118211 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 53810 tccacttgctcctcctcttcct 53789
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 tccacttgctcctcctcttcct 419 |||||||||||||||||||||| Sbjct: 60682 tccacttgctcctcctcttcct 60661
>gb|AC115799.10| Mus musculus chromosome 6, clone RP23-406G9, complete sequence Length = 227078 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 cctcttccacttgctcctcctcttc 417 |||||||| |||||||||||||||| Sbjct: 100480 cctcttcctcttgctcctcctcttc 100456
>emb|AL355474.15| Human DNA sequence from clone RP11-55C5 on chromosome 10 Contains a novel gene and the 5' end of the FAM13C1 gene for family with sequence similarity 13 member C1, complete sequence Length = 120194 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 419 tggaggaggttctctctgttgtcat 443 ||||||||| ||||||||||||||| Sbjct: 86142 tggaggaggatctctctgttgtcat 86118
>gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, complete sequence Length = 203604 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 387 ctcaagcctcttccacttgctcctcctcttcct 419 |||||||||||||| ||| ||||||||| |||| Sbjct: 72512 ctcaagcctcttcctcttcctcctcctcctcct 72544
>emb|AL389900.2|NCB15I20 Neurospora crassa DNA linkage group II BAC clone B15I20 Length = 47481 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 ggaggttctctctgttgtcat 443 ||||||||||||||||||||| Sbjct: 828 ggaggttctctctgttgtcat 808
>gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, complete sequence Length = 215928 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cttccacttgctcctcctcttcctg 420 ||||||||||||||||||| ||||| Sbjct: 166503 cttccacttgctcctcctcatcctg 166479
>dbj|AK091865.1| Homo sapiens cDNA FLJ34546 fis, clone HLUNG2008959 Length = 2105 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 cacttgctcctcctcttcctg 420 ||||||||||||||||||||| Sbjct: 983 cacttgctcctcctcttcctg 963
>gb|AC149050.2| Medicago truncatula chromosome 7 BAC clone mth2-6j14, complete sequence Length = 119126 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 cctcttccacttgctcctcctcttc 417 |||||||| |||||||||||||||| Sbjct: 91549 cctcttccccttgctcctcctcttc 91573
>gb|AC012668.13| Homo sapiens BAC clone RP11-458D8 from 2, complete sequence Length = 192396 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cacttgctcctcctcttcctg 420 ||||||||||||||||||||| Sbjct: 133850 cacttgctcctcctcttcctg 133870
>gb|AC006205.9| Homo sapiens 12 PAC RP5-1154L15 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 120084 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 395 tcttccacttgctcctcctcttcct 419 |||||||||| |||||||||||||| Sbjct: 17790 tcttccacttcctcctcctcttcct 17814
>gb|AC021054.28| Homo sapiens 12 BAC RP11-218M22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174231 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 395 tcttccacttgctcctcctcttcct 419 |||||||||| |||||||||||||| Sbjct: 138788 tcttccacttcctcctcctcttcct 138812
>gb|AC127372.3| Mus musculus BAC clone RP23-37F11 from chromosome 8, complete sequence Length = 175472 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 cctcttccacttgctcctcctcttc 417 |||| |||||||||||||||||||| Sbjct: 32763 cctcctccacttgctcctcctcttc 32739
>emb|AL451011.1|NCB16L14 Neurospora crassa DNA linkage group II BAC clone B16L14 Length = 35066 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 ggaggttctctctgttgtcat 443 ||||||||||||||||||||| Sbjct: 10983 ggaggttctctctgttgtcat 11003
>gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, complete sequence Length = 208140 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 387 ctcaagcctcttccacttgctcctcctcttcct 419 |||||||||||||| ||| ||||||||| |||| Sbjct: 113314 ctcaagcctcttcctcttcctcctcctcctcct 113346
>gb|AC140416.2| Mus musculus BAC clone RP24-347A16 from 6, complete sequence Length = 188390 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 ctcttccacttgctcctcctcttcc 418 ||||||| ||||||||||||||||| Sbjct: 33067 ctcttccccttgctcctcctcttcc 33043
>emb|AL928538.5| Mouse DNA sequence from clone RP23-102P12 on chromosome X, complete sequence Length = 140604 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 gcagacaggagagctgcaccggtgt 342 ||||||||||||||||||| ||||| Sbjct: 24085 gcagacaggagagctgcacaggtgt 24109
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete sequence Length = 191676 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 391 agcctcttccacttgctcctcctcttcct 419 |||||||||||||| ||||||||| |||| Sbjct: 170146 agcctcttccactttctcctcctcctcct 170174
>ref|NM_120822.3| Arabidopsis thaliana unknown protein AT5G07400 mRNA, complete cds Length = 3558 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 390 aagcctcttccacttgctcctcctcttc 417 ||||||||||| |||||| ||||||||| Sbjct: 3371 aagcctcttcctcttgcttctcctcttc 3344
>ref|NM_104961.3| Arabidopsis thaliana amine oxidase/ oxidoreductase AT1G62830 mRNA, complete cds Length = 2713 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 agcctcttccacttgctcctcctcttcc 418 |||||||||| ||| ||||||||||||| Sbjct: 275 agcctcttcctcttcctcctcctcttcc 302
>ref|XM_960616.1| Neurospora crassa OR74A hypothetical protein (NCU02578.1) partial mRNA Length = 4500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acatcgacaagtccatcagg 32 |||||||||||||||||||| Sbjct: 3395 acatcgacaagtccatcagg 3376
>gb|AC113987.11| Mus musculus chromosome 9, clone RP24-106M14, complete sequence Length = 170828 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 393 cctcttccacttgctcctcctcttcctg 420 |||||||| ||| ||||||||||||||| Sbjct: 99400 cctcttcctctttctcctcctcttcctg 99427
>gb|AC186003.3| Pan troglodytes BAC clone CH251-72E16 from chromosome 5, complete sequence Length = 191785 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 aagcctcttccacttgctcc 409 |||||||||||||||||||| Sbjct: 28898 aagcctcttccacttgctcc 28917
>ref|XM_331776.1| Neurospora crassa OR74A hypothetical protein (NCU02578.1) partial mRNA Length = 4500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acatcgacaagtccatcagg 32 |||||||||||||||||||| Sbjct: 3395 acatcgacaagtccatcagg 3376
>gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, complete sequence Length = 168968 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ctcttccacttgctcctcct 413 |||||||||||||||||||| Sbjct: 31602 ctcttccacttgctcctcct 31583
>emb|BX005019.12| Human DNA sequence from clone RP11-490G2 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 36522 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 taacccactcatataaaatg 260 |||||||||||||||||||| Sbjct: 3823 taacccactcatataaaatg 3842
>gb|AY143912.1| Arabidopsis thaliana At1g62830/F23N19_19 mRNA, complete cds Length = 2535 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 agcctcttccacttgctcctcctcttcc 418 |||||||||| ||| ||||||||||||| Sbjct: 245 agcctcttcctcttcctcctcctcttcc 272
>ref|NM_001031428.1| Gallus gallus similar to DAZ associated protein 1 (LOC427266), mRNA Length = 2264 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ctcctcttcctggaggaggt 428 |||||||||||||||||||| Sbjct: 952 ctcctcttcctggaggaggt 933
>emb|BX842632.1| Neurospora crassa DNA linkage group I BAC contig B5K2 Length = 86737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acatcgacaagtccatcagg 32 |||||||||||||||||||| Sbjct: 30388 acatcgacaagtccatcagg 30369
>emb|AJ719492.1| Gallus gallus mRNA for hypothetical protein, clone 2n4 Length = 2264 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ctcctcttcctggaggaggt 428 |||||||||||||||||||| Sbjct: 952 ctcctcttcctggaggaggt 933
>emb|AL691510.11| Mouse DNA sequence from clone RP23-125C16 on chromosome 11 Contains a ribosomal protein S6 (Rps6) pseudogene, complete sequence Length = 116174 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 ctcctcctcttcctggagga 425 |||||||||||||||||||| Sbjct: 106579 ctcctcctcttcctggagga 106598
>gb|AC108358.3| Homo sapiens X BAC RP11-420H7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 43632 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 cttccacttgctcctcctcttcct 419 ||||||||| |||||||||||||| Sbjct: 5835 cttccacttcctcctcctcttcct 5812
>gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165785 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 cttccacttgctcctcctcttcct 419 ||||||||| |||||||||||||| Sbjct: 27897 cttccacttcctcctcctcttcct 27920
>gb|AC020900.5| Homo sapiens chromosome 5 clone CTC-506B8, complete sequence Length = 183768 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 aagcctcttccacttgctcc 409 |||||||||||||||||||| Sbjct: 28449 aagcctcttccacttgctcc 28468
>gb|AY074561.1| Arabidopsis thaliana At1g62830/F23N19_19 mRNA, complete cds Length = 2660 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 agcctcttccacttgctcctcctcttcc 418 |||||||||| ||| ||||||||||||| Sbjct: 275 agcctcttcctcttcctcctcctcttcc 302
>gb|BT006446.1| Arabidopsis thaliana At5g07400 gene, complete cds Length = 3255 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 390 aagcctcttccacttgctcctcctcttc 417 ||||||||||| |||||| ||||||||| Sbjct: 3199 aagcctcttcctcttgcttctcctcttc 3172
>gb|AC008906.5|AC008906 Homo sapiens chromosome 5 clone CTD-2260A17, complete sequence Length = 151801 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 aagcctcttccacttgctcc 409 |||||||||||||||||||| Sbjct: 43955 aagcctcttccacttgctcc 43936
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence Length = 86801 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 391 agcctcttccacttgctcctcctcttcc 418 |||||||||| ||| ||||||||||||| Sbjct: 79896 agcctcttcctcttcctcctcctcttcc 79869
>gb|AC009890.12|AC009890 Genomic Sequence For Homo sapiens Clone H_NH0262L04 From Chromosome 18, complete sequence Length = 177223 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gaacaccatagcttgttgcctggc 376 |||||||||||| ||||||||||| Sbjct: 100870 gaacaccatagcatgttgcctggc 100893
>emb|BX547927.10| Zebrafish DNA sequence from clone CH211-194E15 in linkage group 19, complete sequence Length = 215498 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 ttccacttgctcctcctcttcctg 420 |||||||||| ||||||||||||| Sbjct: 15052 ttccacttgcacctcctcttcctg 15075
>emb|BX000986.4| Zebrafish DNA sequence from clone CH211-210B19 in linkage group 19, complete sequence Length = 151501 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 ttccacttgctcctcctcttcctg 420 |||||||||| ||||||||||||| Sbjct: 18859 ttccacttgcacctcctcttcctg 18836
>dbj|AP006219.1| Homo sapiens genomic DNA, chromosome 18, clone:RP11-243E13, complete sequence Length = 104000 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 gaacaccatagcttgttgcctggc 376 |||||||||||| ||||||||||| Sbjct: 7907 gaacaccatagcatgttgcctggc 7884
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 406 ctcctcctcttcctggaggaggttctct 433 ||||||||||||| ||||||| |||||| Sbjct: 1283454 ctcctcctcttccaggaggagtttctct 1283481
>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project) Length = 116763 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 390 aagcctcttccacttgctcctcctcttc 417 ||||||||||| |||||| ||||||||| Sbjct: 60434 aagcctcttcctcttgcttctcctcttc 60407
>gb|U97329.1|MNU97329 Makaira nigricans ryanodine receptor RyR1 isoform (RyR1) mRNA, complete cds Length = 16313 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 411 cctcttcctggaggaggttctctctgtt 438 |||||||||||| |||||||| |||||| Sbjct: 1524 cctcttcctggaagaggttctgtctgtt 1497 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,976,016 Number of Sequences: 3902068 Number of extensions: 3976016 Number of successful extensions: 116513 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116204 Number of HSP's gapped (non-prelim): 308 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
