ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart24f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 43 5e-04
2EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 42 6e-04
3EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 40 0.002
4EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 40 0.003
5MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 36 0.044
6EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5... 33 0.29
7EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXP... 32 0.83
8EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXP... 30 3.2

>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = -2

Query: 474 DSGKKLVANNVIPANWRPNTDYRSFVQF 391
           +SGKK++A +VIPANWRP+  Y S VQF
Sbjct: 241 ESGKKVIAKDVIPANWRPDAVYTSNVQF 268



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = -2

Query: 474 DSGKKLVANNVIPANWRPNTDYRSFVQF 391
           +SGKK++A ++IPANWRP+  Y S VQF
Sbjct: 163 ESGKKVIAKDIIPANWRPDAVYTSNVQF 190



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>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -2

Query: 474 DSGKKLVANNVIPANWRPNTDYRSFVQF 391
           +SGK +VA+NVIPANW+P   Y+S V F
Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273



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>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -2

Query: 474 DSGKKLVANNVIPANWRPNTDYRSFVQF 391
           +S K +VA NVIPANW+P+  YRS V F
Sbjct: 232 ESHKVIVAYNVIPANWKPDESYRSIVNF 259



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 36.2 bits (82), Expect = 0.044
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -2

Query: 474 DSGKKLVANNVIPANWRPNTDYRSFVQF 391
           + G  LV ++VIPANW+P+T Y S +QF
Sbjct: 217 EGGAHLVQDDVIPANWKPDTVYTSKLQF 244



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>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)|
           (Ath-ExpBeta-1.3)
          Length = 264

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 471 SGKKLVANNVIPANWRPNTDYRSFVQF 391
           SGKK++A  VIP  W P   Y S V F
Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNF 257



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>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)|
           (Ath-ExpBeta-1.6)
          Length = 264

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 471 SGKKLVANNVIPANWRPNTDYRSFVQFS 388
           +GK L A +V+P NW P   Y S + FS
Sbjct: 234 AGKTLSATDVVPRNWAPKATYSSRLNFS 261



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>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)|
           (Ath-ExpBeta-1.5)
          Length = 271

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 471 SGKKLVANNVIPANWRPNTDYRSFVQFS 388
           + K L A +VIP+NW P   Y S + FS
Sbjct: 241 NNKTLSATDVIPSNWVPKATYTSRLNFS 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,739,467
Number of Sequences: 219361
Number of extensions: 1273580
Number of successful extensions: 3568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3567
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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