Clone Information

BLAST Search Result

Clone Name	rbart24f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	164	2e-40
2	SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor)...	107	2e-23
3	SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor)...	107	2e-23
4	PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6...	88	1e-17
5	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	54	3e-07
6	RSD1_SCHPO (O13845) RNA-binding protein rsd1	49	8e-06
7	U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 aux...	48	1e-05
8	U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux...	48	1e-05
9	U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux...	48	1e-05
10	UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7....	45	8e-05
11	UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2....	45	8e-05
12	U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux...	45	8e-05
13	UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2....	44	2e-04
14	UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2	41	0.002
15	U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 aux...	37	0.030
16	U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 aux...	37	0.030
17	YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i...	35	0.11
18	U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 aux...	35	0.11
19	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	35	0.15
20	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	35	0.15
21	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	34	0.25
22	HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated...	33	0.43
23	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	33	0.43
24	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	33	0.56
25	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.56
26	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.56
27	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.56
28	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.56
29	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.56
30	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	33	0.56
31	SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4	32	0.73
32	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	31	1.6
33	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	31	1.6
34	FAT1_SCHPO (O13735) Actin-interacting protein 3 homolog	31	1.6
35	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	31	2.1
36	CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)	30	2.8
37	CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Chole...	30	2.8
38	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	30	3.6
39	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	30	3.6
40	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	30	3.6
41	SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing prote...	30	3.6
42	SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4	30	3.6
43	CEND3_MOUSE (Q8R5G7) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GA...	30	3.6
44	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	30	4.7
45	DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-...	30	4.7
46	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	30	4.7
47	SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 sn...	30	4.7
48	SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 sn...	29	6.2
49	POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p...	29	6.2
50	POLG_HCVK3 (Q81495) Genome polyprotein [Contains: Core protein p...	29	6.2
51	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	29	6.2
52	GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (G...	29	6.2
53	GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (G...	29	6.2
54	U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 aux...	29	6.2
55	PLCA_ERWCH (Q47499) Extracellular phospholipase C (EC 3.1.-.-)	29	8.1
56	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	29	8.1
57	TTKB_DROME (P17789) Protein tramtrack, beta isoform (Tramtrack p...	29	8.1
58	MUC1_YEAST (P08640) Mucin-like protein 1 precursor	29	8.1
59	MODU_DROME (P13469) DNA-binding protein modulo	29	8.1

>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score =  164 bits (414), Expect = 2e-40
 Identities = 75/108 (69%), Positives = 91/108 (84%)
 Frame = -3

Query: 498 QPTRVVLLRNMIGPGEVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLF 319
           +PTRV+LLRNM+GPG+VDDELEDE+  EC K+G V RVLIFEIT+ NFP  EAVRIFV F
Sbjct: 280 EPTRVLLLRNMVGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQF 339

Query: 318 ERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNELAPMPGEVAGF 175
            R E++TKALV+L+GRYFGGR V ATF+DE  F +NELAP+PGE+ G+
Sbjct: 340 SRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

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>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 405

 Score =  107 bits (266), Expect = 2e-23
 Identities = 56/98 (57%), Positives = 71/98 (72%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFE 316
           PT+VVLLRNM+G GEVD++LE E   EC K+G V + +IFEI  A  P DEAVRIF+ FE
Sbjct: 307 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFE 364

Query: 315 RTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNELA 202
           R E + KA+V+L GRYFGGR+V A F++   F   +LA
Sbjct: 365 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 402

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>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 401

 Score =  107 bits (266), Expect = 2e-23
 Identities = 56/98 (57%), Positives = 71/98 (72%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFE 316
           PT+VVLLRNM+G GEVD++LE E   EC K+G V + +IFEI  A  P DEAVRIF+ FE
Sbjct: 303 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFE 360

Query: 315 RTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNELA 202
           R E + KA+V+L GRYFGGR+V A F++   F   +LA
Sbjct: 361 RVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398

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>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
 Frame = -3

Query: 492 TRVVLLRNMIGPGEVDDELEDEIASECSKFGAVLRVLIFEITQA-NFPADEA---VRIFV 325
           +RV++LRNM+GP +VD+ L++EI  ECSKFG V RV+IF   Q  N   DEA   V+IFV
Sbjct: 536 SRVIILRNMVGPEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFV 595

Query: 324 LFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNELA 202
            F    ++ +    L+GR+FGGR V A  +D+G F++ +L+
Sbjct: 596 EFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLS 636

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>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDDELE-----DEIASECSKFGAVLRVLIFE-ITQANFPADEAVR 334
           PT V+ L NM+ P E+ DE E     ++I  EC+K+G V  V I   I     P     +
Sbjct: 316 PTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPG--CGK 373

Query: 333 IFVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNE 208
           +FV F    D  KA   L GR F  R+V  ++FD   + R E
Sbjct: 374 VFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRRE 415

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = -3

Query: 492 TRVVLLRNMIGPGEVDD-----ELEDEIASECS-KFGAVLRVLIFEITQANFPADEAVRI 331
           +R  LL NM  P E        ELE ++  EC  K+G V+ + +          +E  +I
Sbjct: 506 SRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVP--------NELGQI 557

Query: 330 FVLFERTEDSTKALVELEGRYFGGRIVHATFFDE 229
           FV FE  + + KA+  L  R+FGGR + A+   E
Sbjct: 558 FVKFENADFAEKAITGLHQRWFGGRTIKASILPE 591

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>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
 Frame = -3

Query: 492 TRVVLLRNMIGPGEV--DDELED---EIASECSKFGAVLRVLIFEITQANFPADEAVRIF 328
           T ++ L NM+   E+  DDE E+   ++  ECSK+G ++R L       + P     ++F
Sbjct: 397 TEILCLMNMVTEDELKADDEYEEILEDVRDECSKYG-IVRSLEIPRPYEDHPVPGVGKVF 455

Query: 327 VLFERTEDSTKALVELEGRYFGGRIVHATFFD 232
           V F  T D  +A   L GR F  R V  +++D
Sbjct: 456 VEFASTSDCQRAQAALTGRKFANRTVVTSYYD 487

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>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDD-----ELEDEIASECSKFGAVLRVLIFE-ITQANFPADEAVR 334
           PT V+ L NM+ P E+ D     E+ +++  ECSK+G V  + I   +     P     +
Sbjct: 374 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPG--CGK 431

Query: 333 IFVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNE 208
           IFV F    D  KA+  L GR F  R+V   + D   + R +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRD 473

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>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDD-----ELEDEIASECSKFGAVLRVLIFE-ITQANFPADEAVR 334
           PT V+ L NM+ P E+ D     E+ +++  ECSK+G V  + I   +     P     +
Sbjct: 374 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPG--CGK 431

Query: 333 IFVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNE 208
           IFV F    D  KA+  L GR F  R+V   + D   + R +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRD 473

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>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase|
           interacting with stathmin) (U2AF homology motif kinase
           1) (PAM COOH-terminal interactor protein 2) (P-CIP2)
          Length = 419

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPG--EVDDELED---EIASECSKFGAVLRVLIFEITQANFPADEAVR- 334
           PT V+ L N++     E +DE ED   ++  EC K+G V+ +L+        P +   R 
Sbjct: 319 PTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLV--------PKENPGRG 370

Query: 333 -IFVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNEL 205
            +FV +    DS  A   L GR F G+ V ATF+    ++R  L
Sbjct: 371 QVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYL 414

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>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase|
           interacting with stathmin) (U2AF homology motif kinase
           1)
          Length = 419

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPG--EVDDELED---EIASECSKFGAVLRVLIFEITQANFPADEAVR- 334
           PT V+ L N++     E +DE ED   ++  EC K+G V+ +L+        P +   R 
Sbjct: 319 PTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLV--------PKENPGRG 370

Query: 333 -IFVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNEL 205
            +FV +    DS  A   L GR F G+ V ATF+    ++R  L
Sbjct: 371 QVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYL 414

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>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = -3

Query: 492 TRVVLLRNMIGPGEVD-----DELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIF 328
           T ++ L NM+   E+      +E+ +++  ECSK+G ++R L       + P     ++F
Sbjct: 388 TEILCLMNMVTEDELRSDEDYEEILEDVREECSKYG-IVRSLEIPRPYDDHPVPGVGKVF 446

Query: 327 VLFERTEDSTKALVELEGRYFGGRIVHATFFD 232
           V F  T D  +A   L GR F  R V  +++D
Sbjct: 447 VEFATTSDCQRAQAALTGRKFANRTVVTSYYD 478

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>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase|
           interacting with stathmin) (U2AF homology motif kinase
           1)
          Length = 419

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDDELE-----DEIASECSKFGAVLRVLIFEITQANFPADEAVR- 334
           PT V+ L N++    +++E E     +++  EC K+G V+ +L+        P +   R 
Sbjct: 319 PTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLV--------PKENPGRG 370

Query: 333 -IFVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERNEL 205
            +FV +    DS  A   L GR F G+ V ATF+    ++R  L
Sbjct: 371 QVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYL 414

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>UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2|
          Length = 367

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
 Frame = -3

Query: 489 RVVLLRNMIGPGEVDD------ELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIF 328
           ++V+L+++    E+D       +L+D+I  E  K G V  V++++             + 
Sbjct: 249 KIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGV-------VT 301

Query: 327 VLFERTEDSTKALVELEGRYFGGRIVHATFFD 232
           V F   E++   +  ++GRYF GR+V A+ +D
Sbjct: 302 VRFSNNEEAEACVRLMQGRYFDGRVVEASIYD 333

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>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 239

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -3

Query: 444 DELEDEIASECS-KFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRY 268
           DE  +E+ +E   K+G V  + + +    N        ++V F R ED+ KA+++L  R+
Sbjct: 78  DEFFEEVFTEMEEKYGEVEEMNVCD----NLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 133

Query: 267 FGGRIVHA 244
           F G+ +HA
Sbjct: 134 FNGQPIHA 141

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>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 238

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -3

Query: 444 DELEDEIASECS-KFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRY 268
           DE  +E+ +E   K+G V  + + +    N        ++V F R ED+ KA+++L  R+
Sbjct: 78  DEFFEEVFTEMEEKYGEVEEMNVCD----NLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 133

Query: 267 FGGRIVHA 244
           F G+ +HA
Sbjct: 134 FNGQPIHA 141

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>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = -3

Query: 435 EDEIASECSKFGAVLRVLIFEITQANFPADEAVR--IFVLFERTEDSTKALVELEGRYFG 262
           EDE+    SKFG V  V I        P  +A R   F+ F   E++T A+  L  + F 
Sbjct: 114 EDELQQIFSKFGTVTHVRIM-----REPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFY 168

Query: 261 GRIVHATFFDEGGFERNELAPMPGEVAGFD 172
           GR+++     +        +P PG+  G+D
Sbjct: 169 GRVLNV----QKAKRSRPHSPTPGKYMGYD 194

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>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor|
           59 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF59)
          Length = 517

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDD-----ELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRI 331
           PTRV+ L N+I   E+ D     ++ + + ++ S +G ++ + I              ++
Sbjct: 416 PTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKV 475

Query: 330 FVLFERTEDSTKALVELEGRYFGGRIVHATFFDEGGFERN 211
           FV +     +  A+ E++G  F  R +   F+ E  ++ N
Sbjct: 476 FVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGEDCYKAN 515

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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = -3

Query: 492 TRVVLLRNMIGPG---EV--DDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIF 328
           T+   L NM  P    EV  D E++D++  EC+K G V+ + + + +           ++
Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG-------NVY 475

Query: 327 VLFERTEDSTKALVELEGRYFGGRIVHATF 238
           V       +  A+  L GR+F G+++ A +
Sbjct: 476 VKCPSIAAAIAAVNALHGRWFAGKMITAAY 505

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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = -3

Query: 492 TRVVLLRNMIGPG---EV--DDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIF 328
           T+   L NM  P    EV  D E++D++  EC+K G V+ + + + +           ++
Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG-------NVY 475

Query: 327 VLFERTEDSTKALVELEGRYFGGRIVHATF 238
           V       +  A+  L GR+F G+++ A +
Sbjct: 476 VKCPSIAAAIAAVNALHGRWFAGKMITAAY 505

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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 25/90 (27%), Positives = 43/90 (47%)
 Frame = -3

Query: 498 QPTRVVLLRNMIGPGEVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLF 319
           Q T  + LRN++         ED+     S +G +  V +   T+       A   +VLF
Sbjct: 322 QKTGRLFLRNILY-----SSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFA---YVLF 373

Query: 318 ERTEDSTKALVELEGRYFGGRIVHATFFDE 229
            + E++ +A +EL+ + F GR++H    DE
Sbjct: 374 AKPEEAVQAYIELDKQIFQGRLLHILAADE 403

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>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2)
          Length = 889

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 273 GLPVRPMPWSSLLSSRTAQRSSPLRL-RGSLPG*SRISARATQPQTWSIPRQSRLPARR- 446
           GLP  P+   +L + R ++ S PL   + SLP  +   A +T+P + S PR    PA R 
Sbjct: 797 GLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLRPTPAARA 856

Query: 447 -QPRPDQ 464
             P PD+
Sbjct: 857 AAPSPDR 863

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>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = -3

Query: 495 PTRVVLLRNMIGPGEVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFE 316
           PT+++ L  +       D  E+E+ +   + GAV+   +FE+           +  V FE
Sbjct: 353 PTKMIHLSTL-----PQDVTEEEVMNHVQEHGAVVNTKVFEMNGKK-------QALVQFE 400

Query: 315 RTEDSTKALVELEGRYFGGRIVHATF 238
             E++ +ALV       GG I+  +F
Sbjct: 401 NEEEAAEALVCKHATSLGGSIIRISF 426

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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -3

Query: 453 EVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEG 274
           EVDDE   E+ S+   FG  L V +                FV +E+ ED+ KA+ E+ G
Sbjct: 201 EVDDESLKELFSQ---FGKTLSVKVMRDPNGKSKGFG----FVSYEKHEDANKAVEEMNG 253

Query: 273 RYFGGRIV 250
           +   G+I+
Sbjct: 254 KEISGKII 261

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>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 450 VDDELEDE-IASECSKFGAVLRV-LIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           +D+ + DE +  E S FG++ R  ++ E+ Q            V F   E++TKA+ E+ 
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG------VVCFSSFEEATKAVDEMN 362

Query: 276 GRYFGGRIVHAT 241
           GR  G + +H T
Sbjct: 363 GRIVGSKPLHVT 374

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>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 450 VDDELEDE-IASECSKFGAVLRV-LIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           +D+ + DE +  E S FG++ R  ++ E+ Q            V F   E++TKA+ E+ 
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG------VVCFSSFEEATKAVDEMN 362

Query: 276 GRYFGGRIVHAT 241
           GR  G + +H T
Sbjct: 363 GRIVGSKPLHVT 374

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>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 450 VDDELEDE-IASECSKFGAVLRV-LIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           +D+ + DE +  E S FG++ R  ++ E+ Q            V F   E++TKA+ E+ 
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG------VVCFSSFEEATKAVDEMN 362

Query: 276 GRYFGGRIVHAT 241
           GR  G + +H T
Sbjct: 363 GRVVGSKPLHVT 374

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>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 450 VDDELEDE-IASECSKFGAVLRV-LIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           +D+ + DE +  E S FG++ R  ++ E+ Q            V F   E++TKA+ E+ 
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG------VVCFSSFEEATKAVDEMN 362

Query: 276 GRYFGGRIVHAT 241
           GR  G + +H T
Sbjct: 363 GRIVGSKPLHVT 374

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>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 450 VDDELEDE-IASECSKFGAVLRV-LIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           +D+ + DE +  E S FG++ R  ++ E+ Q            V F   E++TKA+ E+ 
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG------VVCFSSFEEATKAVDEMN 362

Query: 276 GRYFGGRIVHAT 241
           GR  G + +H T
Sbjct: 363 GRIVGSKPLHVT 374

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>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 450 VDDELEDE-IASECSKFGAVLRV-LIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           +D+ + DE +  E S FG++ R  ++ E+ Q            V F   E++TKA+ E+ 
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG------VVCFSSFEEATKAVDEMN 362

Query: 276 GRYFGGRIVHAT 241
           GR  G + +H T
Sbjct: 363 GRIVGSKPLHVT 374

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>SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4|
          Length = 974

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 194 GIGASSFLSNPPSSKKVACTMRPPK*RPSSSTNALVESSVLSN 322
           G+  +SFLS  PS   ++ ++ P K +PS +T+ +  SSV+S+
Sbjct: 179 GLNETSFLSKRPSGSDIS-SVNPKKPKPSENTSGIDASSVISS 220

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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -3

Query: 444 DELEDEIASEC-SKFGAVLRVLIFEITQANFPADEAVRI----FVLFERTEDSTKALVEL 280
           ++++DE   E   KFG  L V +          DE+ +     FV FER ED+ KA+ E+
Sbjct: 200 EDMDDERLKELFGKFGPALSVKVM--------TDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 279 EGRYFGGRIVH 247
            G+   G+ ++
Sbjct: 252 NGKELNGKQIY 262

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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -3

Query: 444 DELEDEIASEC-SKFGAVLRVLIFEITQANFPADEAVRI----FVLFERTEDSTKALVEL 280
           ++++DE   E   KFG  L V +          DE+ +     FV FER ED+ KA+ E+
Sbjct: 200 EDMDDERLKELFGKFGPALSVKVM--------TDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 279 EGRYFGGRIVH 247
            G+   G+ ++
Sbjct: 252 NGKELNGKQIY 262

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>FAT1_SCHPO (O13735) Actin-interacting protein 3 homolog|
          Length = 1385

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
 Frame = +2

Query: 173 SNPATSPGIGASSFLSNPPSS---------KKVACTM---RPPK*RPSSSTNALVESSVL 316
           S   ++P  GAS+ L N PSS         KK A  +    PP     S+T+      ++
Sbjct: 663 SEDKSTPNTGASAKLINDPSSTITVSDVYPKKPASPVEITEPPSSALVSATSPTTNVPIV 722

Query: 317 SNSTKILTASSAGKFAWVISNISTRNTA--PNLEHS 418
             +  + TA S    + ++SNIS   T   PN+  S
Sbjct: 723 PEAVHLSTAFSTAPVSTIVSNISPLPTVAPPNVSGS 758

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>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -3

Query: 444 DELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRYF 265
           D  E ++    SKFG +  + +   T++      A   +V +   + + +A  EL+G++F
Sbjct: 311 DASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFA---YVQYIEPDAAVQAYKELDGKHF 367

Query: 264 GGRIVH---ATFFDEGGFERNELAPMP 193
            GR++H   AT       + +EL+ +P
Sbjct: 368 QGRLMHILPATAKKTYKIDEHELSKLP 394

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>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)|
          Length = 567

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
 Frame = +2

Query: 173 SNPATSPGIGASSFLSNPPSSKKVACTMRPPK*RPS-SSTNALVESSVLSNSTKILTASS 349
           S+  T+     S+ +S+  SS K + T        S SST +   SS  S+ST   T+S+
Sbjct: 321 SSSTTTTTTTTSTTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSSTSSSTSST 380

Query: 350 AGKFAWVISNISTRNTAPNLEHSEAIXXXXXXXXXPGPIMLRSSTT 487
               +   S IST +TAP    S +               + SS T
Sbjct: 381 TSS-STTSSQISTTSTAPTSSTSLSSSTISTSASTSDTTSVTSSET 425

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>CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Cholesterol|
           24-hydroxylase) (CH24H)
          Length = 500

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -3

Query: 438 LEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRYFGG 259
           L+D       K+G V+RV +F  T     + E+V+ F++  +    +K    L+   FG 
Sbjct: 60  LQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQ-TVFGE 118

Query: 258 RIVHATFFDEGGFER 214
           R+       E  +ER
Sbjct: 119 RLFGQGLVSECNYER 133

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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -3

Query: 444 DELEDEIASEC-SKFGAVLRVLIFEITQANFPADEAVRI----FVLFERTEDSTKALVEL 280
           ++++DE   +   KFG  L V +          DE+ +     FV FER ED+ KA+ E+
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVM--------TDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 279 EGRYFGGRIVH 247
            G+   G+ ++
Sbjct: 252 NGKELNGKQIY 262

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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -3

Query: 444 DELEDEIASEC-SKFGAVLRVLIFEITQANFPADEAVRI----FVLFERTEDSTKALVEL 280
           ++++DE   +   KFG  L V +          DE+ +     FV FER ED+ KA+ E+
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVM--------TDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 279 EGRYFGGRIVH 247
            G+   G+ ++
Sbjct: 252 NGKELNGKQIY 262

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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -3

Query: 444 DELEDEIASEC-SKFGAVLRVLIFEITQANFPADEAVRI----FVLFERTEDSTKALVEL 280
           ++++DE   +   KFG  L V +          DE+ +     FV FER ED+ KA+ E+
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVM--------TDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 279 EGRYFGGRIVH 247
            G+   G+ ++
Sbjct: 252 NGKELNGKQIY 262

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>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6|
          Length = 883

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
 Frame = +2

Query: 179 PATSPGIGASSFLSNPPSSKKVACTMRPPK*RPSSSTNA-------------LVESSVLS 319
           PA+ P  G+ S  S P SSKK+  + RPP    ++S +                ESSV S
Sbjct: 694 PASLPSSGSGSS-SGPSSSKKLDPSKRPPSGTSATSKSTSPTLTPSPSPKGHTAESSVSS 752

Query: 320 NSTKILTASSAGKFAWVISN 379
           +S+   + SS G  +  I++
Sbjct: 753 SSSHRQSKSSGGSSSGTITD 772

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>SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4|
          Length = 979

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 194 GIGASSFLSNPPSSKKVACTMRPPK*RPSSSTNALVESSVL-SNSTKILTASSA 352
           G+  SSFLS  PS+ +V   + P K +PS S +    S+VL S  +  +T+S A
Sbjct: 167 GMSESSFLSKRPSTSEVN-NVNPKKPKPSESVSGANSSAVLPSVKSPSVTSSQA 219

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>CEND3_MOUSE (Q8R5G7) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin|
           repeat and pleckstrin homology domain-containing protein
           3) (Dual specificity Rho- and Arf-GTPase-activating
           protein 1)
          Length = 1538

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 173 SNPATSPGIGASSFLSNPPSSKKVACTMRPPK*RPSSSTNALVESSV 313
           SNPAT+   G S    +P  S+   CT R     PSSS +  V +++
Sbjct: 105 SNPATAQRPGLSPIFWDPEVSRNSECTQRSSPLLPSSSEHPSVPNTM 151

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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -3

Query: 435 EDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRYFGGR 256
           ED+     S +G +  V I   T+       A   +VLF+  +++  A VEL+ + F GR
Sbjct: 343 EDDFRKLFSPYGELEEVHIAVDTRTGQSKGFA---YVLFKNADNAATAFVELDKQIFQGR 399

Query: 255 IVH 247
           ++H
Sbjct: 400 LLH 402

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>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated|
           transcription factor 1) (DATF-1) (Fragments)
          Length = 1956

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 276 LPVRPMPWSSLLSSRTAQRSSPLRLRGS---LPG*SRISARATQPQTWSIPRQSRLPARR 446
           +P RP P S+ LS  +A+++ P  +  +   LPG + +     +P + ++P  S  P R 
Sbjct: 595 IPKRPWP-SATLSGTSARQAGPTPMTAASKKLPGSAAVVGVTRKPMSANVPAASPAPGRL 653

Query: 447 QP 452
            P
Sbjct: 654 GP 655

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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 27/98 (27%)
 Frame = -3

Query: 459 PGEVDDELEDEIASECSKFGAV-------LRVLIFEITQANF-----PADEAVRI----- 331
           P E +   EDE+++E +    +       LR ++++ T+ +F     P  E   +     
Sbjct: 276 PAEQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVD 335

Query: 330 ----------FVLFERTEDSTKALVELEGRYFGGRIVH 247
                     +VLF+  E +  A +EL+ + F GR++H
Sbjct: 336 TRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLH 373

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>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 286

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 444 DELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEG 274
           DEL+  + +  S+FG +L +L+  I +    A      FV+F+    +T AL  ++G
Sbjct: 29  DELKKSLYAIFSQFGQILDILVSRIMKMRGQA------FVIFKEVTSATNALRSMQG 79

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>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 282

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 444 DELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEG 274
           DEL+  + +  S+FG +L +L+    +    A      FV+F+ T  +T AL  ++G
Sbjct: 24  DELKKSLYAIFSQFGQILDILVSRNLKMRGQA------FVIFKETSSATNALRSMQG 74

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>POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3020

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +3

Query: 276  LPVRPMPWSSLLSSR-------TAQRSSPLRLRGSLPG*SRISARATQPQTWSIPRQSRL 434
            LP  P P  S+L+S        TA+ ++    RGS P  S  S+ A+Q    S P     
Sbjct: 2165 LPCEPEPDVSVLTSMLRDPSHITAETAARRLARGSPP--SEASSSASQ---LSAPSLKAT 2219

Query: 435  PARRQPRPDQSCYEAALLW 491
                +P PD    +A LLW
Sbjct: 2220 CQTHRPHPDAELVDANLLW 2238

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>POLG_HCVK3 (Q81495) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3020

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +3

Query: 276  LPVRPMPWSSLLSSR-------TAQRSSPLRLRGSLPG*SRISARATQPQTWSIPRQSRL 434
            LP  P P  S+L+S        TA+ ++    RGS P  S  S+ A+Q    S P     
Sbjct: 2165 LPCEPEPDVSVLTSMLRDPSHITAETAARRLARGSPP--SEASSSASQ---LSAPSLKAT 2219

Query: 435  PARRQPRPDQSCYEAALLW 491
                +P PD    +A LLW
Sbjct: 2220 CQTHRPHPDAELVDANLLW 2238

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -3

Query: 435 EDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRYFGGR 256
           E++  S  S++GA+  V I   T+          ++V F + ED+T+A   L+ + F GR
Sbjct: 323 EEDFRSLFSQYGALEEVHIAIDTRTG---KSKGFLYVQFLKKEDATRAYRSLDKQIFQGR 379

Query: 255 IVH 247
           ++H
Sbjct: 380 LLH 382

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>GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -3

Query: 498 QPTRVVLLRNMIGP-GEVDDELEDEIASECSKFG 400
           + T +V+L+  +GP G+ ++E E+E++S C + G
Sbjct: 358 ETTELVVLQGRVGPAGDEEEEEEEELSSSCEEEG 391

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>GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -3

Query: 498 QPTRVVLLRNMIGP-GEVDDELEDEIASECSKFG 400
           + T +V+L+  +GP G+ ++E E+E++S C + G
Sbjct: 358 ETTELVVLQGRVGPAGDEEEEEEEELSSSCEEEG 391

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>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor|
           38 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 264

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 444 DELEDEIASECS-KFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRY 268
           D   +++  EC  K+G +  + + +    N        +++ F    D+ KA  +L  R+
Sbjct: 81  DNFFEDVFVECEDKYGEIEEMNVCD----NLGDHLVGNVYIKFRNEADAEKAANDLNNRW 136

Query: 267 FGGRIVHA 244
           FGGR V++
Sbjct: 137 FGGRPVYS 144

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>PLCA_ERWCH (Q47499) Extracellular phospholipase C (EC 3.1.-.-)|
          Length = 358

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 393 LRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRYFGGRIVHAT 241
           +R+++ +  Q    AD+    F    + +   + L ELE ++FGGR V  T
Sbjct: 141 IRLVVVDPVQGQQDADKDTNAFNAILKDKTLAQILAELETKWFGGREVFDT 191

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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 444 DELEDEIASEC-SKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELEGRY 268
           D++ DE   E   K+G  L V +  +T  N  +      FV FER ED+ KA+ E+ G+ 
Sbjct: 200 DDMNDERLKEMFGKYGPALSVKV--MTDDNGKSKGFG--FVSFERHEDAQKAVDEMNGKD 255

Query: 267 FGGR 256
             G+
Sbjct: 256 MNGK 259

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>TTKB_DROME (P17789) Protein tramtrack, beta isoform (Tramtrack p69) (Repressor|
           protein fushi tarazu)
          Length = 643

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 158 IIKV*SNPATSPGIGASSFLSNPPSSKKVACTMRPPK*RPSSSTNAL-VESSVLSNSTKI 334
           II    NP+T+    A++ L+  P     A T  PP     +S  +L   S+ LS S+  
Sbjct: 559 IIHKIENPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNSNQSLPATSNALSTSSSS 618

Query: 335 LTASSAG 355
            T+SS+G
Sbjct: 619 STSSSSG 625

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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
 Frame = +2

Query: 173 SNPATSPGIGASSFLSNPPSSKKVACTMRPPK*RPSSSTNALVESSVLSNSTKILTASSA 352
           S P TS    +SS     PSS     +  P     + S++A V SS   +S+  +T+S+ 
Sbjct: 380 SAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTT 439

Query: 353 -GKFAWVISNISTRNTAP-------NLEHSEAIXXXXXXXXXPGPIMLRSSTT 487
               A V S+ +  ++AP         E S A            P+   SS+T
Sbjct: 440 ESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSST 492

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>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -3

Query: 456 GEVDDELEDEIASECSKFGAVLRVLIFEITQANFPADEAVRIFVLFERTEDSTKALVELE 277
           G+ +    D +     KFG        ++ + +    +AV  FV F++++ +TKAL +L+
Sbjct: 348 GKHESYSSDALEKIFKKFG--------DVEEIDVVCSKAVLAFVTFKQSDAATKALAQLD 399

Query: 276 GR 271
           G+
Sbjct: 400 GK 401


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,276,807
Number of Sequences: 219361
Number of extensions: 1645284
Number of successful extensions: 4685
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 4517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4660
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result